HEADER TRANSFERASE 05-FEB-17 5X3F TITLE CRYSTAL STRUCTURE OF THE YGJG-PROTEIN A-ZPA963-PKA CATALYTIC DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTRESCINE AMINOTRANSFERASE,IMMUNOGLOBULIN G-BINDING COMPND 3 PROTEIN A; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 7-453,220-269; COMPND 6 SYNONYM: PUTRESCINE--2-OXOGLUTARIC ACID TRANSAMINASE,PATASE,IGG- COMPND 7 BINDING PROTEIN A,STAPHYLOCOCCAL PROTEIN A; COMPND 8 EC: 2.6.1.82; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 OTHER_DETAILS: THE FUSION PROTEIN OF PUTRESCINE AMINOTRANSFERASE (UNP COMPND 12 RESIDUES 7-453) AND IMMUNOGLOBULIN G-BINDING PROTEIN A (UNP RESIDUES COMPND 13 220-269); COMPND 14 MOL_ID: 2; COMPND 15 MOLECULE: ZPA963,CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT COMPND 16 ALPHA; COMPND 17 CHAIN: B; COMPND 18 FRAGMENT: RESIDUES 97-156,UNP RESIDUES 11-343; COMPND 19 SYNONYM: PKA C-ALPHA; COMPND 20 EC: 2.7.11.11; COMPND 21 ENGINEERED: YES; COMPND 22 OTHER_DETAILS: THE FUSION PROTEIN OF ZPA963 AND CAMP-DEPENDENT COMPND 23 PROTEIN KINASE CATALYTIC SUBUNIT ALPHA (UNP RESIDUES 11-343) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12), STAPHYLOCOCCUS SOURCE 3 AUREUS; SOURCE 4 ORGANISM_TAXID: 83333, 1280; SOURCE 5 STRAIN: K12; SOURCE 6 GENE: PATA, YGJG, B3073, JW5510, SPA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS, MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 1280, 10090; SOURCE 13 GENE: PRKACA, PKACA; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SYNTHETIC PROTEIN, LYASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.J.YOUN,N.Y.KWON,J.H.LEE,J.H.KIM,H.LEE,J.O.LEE REVDAT 2 22-NOV-23 5X3F 1 REMARK REVDAT 1 28-JUN-17 5X3F 0 JRNL AUTH S.J.YOUN,N.Y.KWON,J.H.LEE,J.H.KIM,J.CHOI,H.LEE,J.O.LEE JRNL TITL CONSTRUCTION OF NOVEL REPEAT PROTEINS WITH RIGID AND JRNL TITL 2 PREDICTABLE STRUCTURES USING A SHARED HELIX METHOD. JRNL REF SCI REP V. 7 2595 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28572639 JRNL DOI 10.1038/S41598-017-02803-Z REMARK 2 REMARK 2 RESOLUTION. 3.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 29563 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1493 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.38 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1927 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 113 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6616 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 135.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.43000 REMARK 3 B22 (A**2) : 2.03000 REMARK 3 B33 (A**2) : 2.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.371 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.288 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 42.478 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6757 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9139 ; 1.515 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 840 ; 5.388 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 308 ;41.714 ;24.578 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1182 ;16.409 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;21.808 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1015 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5094 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3366 ; 6.479 ; 7.295 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4204 ; 9.056 ;10.953 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3389 ; 7.964 ; 7.438 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 27990 ;12.293 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6755 ; 3.112 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6616 ;26.488 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 44 REMARK 3 RESIDUE RANGE : A 45 A 227 REMARK 3 RESIDUE RANGE : A 228 A 336 REMARK 3 RESIDUE RANGE : A 337 A 410 REMARK 3 RESIDUE RANGE : A 411 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): -7.2206 -61.1492 -27.1028 REMARK 3 T TENSOR REMARK 3 T11: 0.2773 T22: 0.1847 REMARK 3 T33: 0.1398 T12: 0.0292 REMARK 3 T13: 0.0234 T23: 0.1167 REMARK 3 L TENSOR REMARK 3 L11: 1.3526 L22: 1.5810 REMARK 3 L33: 1.9735 L12: -0.1225 REMARK 3 L13: 0.3485 L23: -0.0361 REMARK 3 S TENSOR REMARK 3 S11: 0.0645 S12: 0.3498 S13: 0.3156 REMARK 3 S21: -0.3544 S22: 0.0273 S23: 0.2266 REMARK 3 S31: -0.3016 S32: -0.2996 S33: -0.0918 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 107 B 170 REMARK 3 RESIDUE RANGE : B 171 B 278 REMARK 3 RESIDUE RANGE : B 279 B 455 REMARK 3 ORIGIN FOR THE GROUP (A): -61.0229 -53.6584 -56.8724 REMARK 3 T TENSOR REMARK 3 T11: 1.1561 T22: 0.5169 REMARK 3 T33: 1.0350 T12: 0.0235 REMARK 3 T13: -0.2045 T23: 0.3587 REMARK 3 L TENSOR REMARK 3 L11: 5.1798 L22: 2.5360 REMARK 3 L33: 3.3874 L12: -0.8993 REMARK 3 L13: 1.6306 L23: -0.4724 REMARK 3 S TENSOR REMARK 3 S11: 0.3045 S12: 0.2874 S13: -1.1490 REMARK 3 S21: -0.5410 S22: 0.1129 S23: -0.0915 REMARK 3 S31: 1.0030 S32: -0.0788 S33: -0.4174 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5X3F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1300002852. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31056 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.380 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4UOY, 2M5A, 4NTS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 91MM MES PH 5.5, 2.33M NA FORMATE, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 70.25900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 76.74800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 102.85700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 70.25900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 76.74800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 102.85700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 70.25900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 76.74800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 102.85700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 70.25900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 76.74800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 102.85700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -153.49600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 -153.49600 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 MET A 6 REMARK 465 SER A 7 REMARK 465 ALA A 8 REMARK 465 PRO A 502 REMARK 465 LYS A 503 REMARK 465 GLY B 97 REMARK 465 SER B 98 REMARK 465 HIS B 99 REMARK 465 MET B 100 REMARK 465 VAL B 101 REMARK 465 ASP B 102 REMARK 465 ASN B 103 REMARK 465 LYS B 104 REMARK 465 PHE B 105 REMARK 465 ASN B 106 REMARK 465 LYS B 456 REMARK 465 PHE B 457 REMARK 465 LYS B 458 REMARK 465 GLY B 459 REMARK 465 PRO B 460 REMARK 465 GLY B 461 REMARK 465 ASP B 462 REMARK 465 THR B 463 REMARK 465 SER B 464 REMARK 465 ASN B 465 REMARK 465 PHE B 466 REMARK 465 ASP B 467 REMARK 465 ASP B 468 REMARK 465 TYR B 469 REMARK 465 GLU B 470 REMARK 465 GLU B 471 REMARK 465 GLU B 472 REMARK 465 GLU B 473 REMARK 465 ILE B 474 REMARK 465 ARG B 475 REMARK 465 VAL B 476 REMARK 465 SER B 477 REMARK 465 ILE B 478 REMARK 465 ASN B 479 REMARK 465 GLU B 480 REMARK 465 LYS B 481 REMARK 465 CYS B 482 REMARK 465 GLY B 483 REMARK 465 LYS B 484 REMARK 465 GLU B 485 REMARK 465 PHE B 486 REMARK 465 THR B 487 REMARK 465 GLU B 488 REMARK 465 PHE B 489 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 368 NH2 ARG A 371 1.88 REMARK 500 O PHE A 91 NZ LYS A 300 1.98 REMARK 500 O LEU B 151 CG1 VAL B 154 2.03 REMARK 500 OD2 ASP B 183 NZ LYS B 202 2.16 REMARK 500 O TPO B 336 OH TYR B 354 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 439 OE1 GLU B 387 8544 1.60 REMARK 500 OG SER A 56 O GLU A 120 2545 1.77 REMARK 500 OE2 GLU A 439 CD GLU B 387 8544 1.91 REMARK 500 OE2 GLU A 439 OE2 GLU B 387 8544 1.92 REMARK 500 OG SER A 149 OE2 GLU A 152 2545 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 48 C - N - CD ANGL. DEV. = -13.6 DEGREES REMARK 500 LEU A 338 CA - CB - CG ANGL. DEV. = 15.8 DEGREES REMARK 500 LEU A 464 N - CA - C ANGL. DEV. = -18.0 DEGREES REMARK 500 PRO B 172 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 PRO B 382 C - N - CA ANGL. DEV. = 10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 34 -72.68 -46.34 REMARK 500 HIS A 45 -21.02 -144.91 REMARK 500 VAL A 46 -79.77 -102.58 REMARK 500 TRP A 68 -64.87 -131.11 REMARK 500 LYS A 113 -60.46 -100.99 REMARK 500 GLN A 114 105.66 -172.31 REMARK 500 GLU A 120 -30.18 -130.57 REMARK 500 CYS A 147 -153.62 -126.30 REMARK 500 HIS A 181 -8.77 -142.96 REMARK 500 GLU A 272 46.51 -94.97 REMARK 500 CYS A 286 5.49 -69.97 REMARK 500 ALA A 299 -155.66 -175.98 REMARK 500 LYS A 300 -99.12 52.28 REMARK 500 GLU A 352 -72.83 -61.84 REMARK 500 LEU A 380 -18.46 -140.18 REMARK 500 ALA A 416 -163.89 -74.54 REMARK 500 ALA A 422 16.76 -154.48 REMARK 500 GLU A 428 57.63 -140.33 REMARK 500 ILE B 185 -60.80 -94.77 REMARK 500 LEU B 221 0.69 -68.09 REMARK 500 LYS B 222 74.08 47.03 REMARK 500 ASP B 305 37.77 -150.90 REMARK 500 ASN B 355 -157.88 -153.25 REMARK 500 LEU B 416 2.38 -69.67 REMARK 500 REMARK 500 REMARK: NULL DBREF 5X3F A 7 453 UNP P42588 PAT_ECOLI 7 453 DBREF 5X3F A 454 503 UNP P38507 SPA_STAAU 220 269 DBREF 5X3F B 97 156 PDB 5X3F 5X3F 97 156 DBREF 5X3F B 157 489 UNP P05132 KAPCA_MOUSE 19 351 SEQADV 5X3F GLY A 3 UNP P42588 EXPRESSION TAG SEQADV 5X3F SER A 4 UNP P42588 EXPRESSION TAG SEQADV 5X3F HIS A 5 UNP P42588 EXPRESSION TAG SEQADV 5X3F MET A 6 UNP P42588 EXPRESSION TAG SEQADV 5X3F VAL A 456 UNP P38507 ASN 222 ENGINEERED MUTATION SEQADV 5X3F ALA A 474 UNP P38507 GLY 240 ENGINEERED MUTATION SEQRES 1 A 501 GLY SER HIS MET SER ALA SER ALA LEU ALA CYS SER ALA SEQRES 2 A 501 HIS ALA LEU ASN LEU ILE GLU LYS ARG THR LEU ASP HIS SEQRES 3 A 501 GLU GLU MET LYS ALA LEU ASN ARG GLU VAL ILE GLU TYR SEQRES 4 A 501 PHE LYS GLU HIS VAL ASN PRO GLY PHE LEU GLU TYR ARG SEQRES 5 A 501 LYS SER VAL THR ALA GLY GLY ASP TYR GLY ALA VAL GLU SEQRES 6 A 501 TRP GLN ALA GLY SER LEU ASN THR LEU VAL ASP THR GLN SEQRES 7 A 501 GLY GLN GLU PHE ILE ASP CYS LEU GLY GLY PHE GLY ILE SEQRES 8 A 501 PHE ASN VAL GLY HIS ARG ASN PRO VAL VAL VAL SER ALA SEQRES 9 A 501 VAL GLN ASN GLN LEU ALA LYS GLN PRO LEU HIS SER GLN SEQRES 10 A 501 GLU LEU LEU ASP PRO LEU ARG ALA MET LEU ALA LYS THR SEQRES 11 A 501 LEU ALA ALA LEU THR PRO GLY LYS LEU LYS TYR SER PHE SEQRES 12 A 501 PHE CYS ASN SER GLY THR GLU SER VAL GLU ALA ALA LEU SEQRES 13 A 501 LYS LEU ALA LYS ALA TYR GLN SER PRO ARG GLY LYS PHE SEQRES 14 A 501 THR PHE ILE ALA THR SER GLY ALA PHE HIS GLY LYS SER SEQRES 15 A 501 LEU GLY ALA LEU SER ALA THR ALA LYS SER THR PHE ARG SEQRES 16 A 501 LYS PRO PHE MET PRO LEU LEU PRO GLY PHE ARG HIS VAL SEQRES 17 A 501 PRO PHE GLY ASN ILE GLU ALA MET ARG THR ALA LEU ASN SEQRES 18 A 501 GLU CYS LYS LYS THR GLY ASP ASP VAL ALA ALA VAL ILE SEQRES 19 A 501 LEU GLU PRO ILE GLN GLY GLU GLY GLY VAL ILE LEU PRO SEQRES 20 A 501 PRO PRO GLY TYR LEU THR ALA VAL ARG LYS LEU CYS ASP SEQRES 21 A 501 GLU PHE GLY ALA LEU MET ILE LEU ASP GLU VAL GLN THR SEQRES 22 A 501 GLY MET GLY ARG THR GLY LYS MET PHE ALA CYS GLU HIS SEQRES 23 A 501 GLU ASN VAL GLN PRO ASP ILE LEU CYS LEU ALA LYS ALA SEQRES 24 A 501 LEU GLY GLY GLY VAL MET PRO ILE GLY ALA THR ILE ALA SEQRES 25 A 501 THR GLU GLU VAL PHE SER VAL LEU PHE ASP ASN PRO PHE SEQRES 26 A 501 LEU HIS THR THR THR PHE GLY GLY ASN PRO LEU ALA CYS SEQRES 27 A 501 ALA ALA ALA LEU ALA THR ILE ASN VAL LEU LEU GLU GLN SEQRES 28 A 501 ASN LEU PRO ALA GLN ALA GLU GLN LYS GLY ASP MET LEU SEQRES 29 A 501 LEU ASP GLY PHE ARG GLN LEU ALA ARG GLU TYR PRO ASP SEQRES 30 A 501 LEU VAL GLN GLU ALA ARG GLY LYS GLY MET LEU MET ALA SEQRES 31 A 501 ILE GLU PHE VAL ASP ASN GLU ILE GLY TYR ASN PHE ALA SEQRES 32 A 501 SER GLU MET PHE ARG GLN ARG VAL LEU VAL ALA GLY THR SEQRES 33 A 501 LEU ASN ASN ALA LYS THR ILE ARG ILE GLU PRO PRO LEU SEQRES 34 A 501 THR LEU THR ILE GLU GLN CYS GLU LEU VAL ILE LYS ALA SEQRES 35 A 501 ALA ARG LYS ALA LEU ALA ALA MET ARG GLN GLN VAL ALA SEQRES 36 A 501 PHE TYR GLU ILE LEU HIS LEU PRO ASN LEU ASN GLU GLU SEQRES 37 A 501 GLN ARG ASN ALA PHE ILE GLN SER LEU LYS ASP ASP PRO SEQRES 38 A 501 SER GLN SER ALA ASN LEU LEU ALA GLU ALA LYS LYS LEU SEQRES 39 A 501 ASN ASP ALA GLN ALA PRO LYS SEQRES 1 B 393 GLY SER HIS MET VAL ASP ASN LYS PHE ASN LYS GLU THR SEQRES 2 B 393 GLN GLU ALA SER TRP GLU ILE PHE THR LEU PRO ASN LEU SEQRES 3 B 393 ASN GLY ARG GLN VAL ALA ALA PHE ILE SER SER LEU LEU SEQRES 4 B 393 ASP ASP PRO SER GLN SER ALA ASN LEU LEU ALA GLU ALA SEQRES 5 B 393 LYS LYS LEU ASN ASP VAL GLN ALA PHE LEU ALA LYS ALA SEQRES 6 B 393 LYS GLU ASP PHE LEU LYS LYS TRP GLU THR PRO SER GLN SEQRES 7 B 393 ASN THR ALA GLN LEU ASP GLN PHE ASP ARG ILE LYS THR SEQRES 8 B 393 LEU GLY THR GLY SER PHE GLY ARG VAL MET LEU VAL LYS SEQRES 9 B 393 HIS LYS GLU SER GLY ASN HIS TYR ALA MET LYS ILE LEU SEQRES 10 B 393 ASP LYS GLN LYS VAL VAL LYS LEU LYS GLN ILE GLU HIS SEQRES 11 B 393 THR LEU ASN GLU LYS ARG ILE LEU GLN ALA VAL ASN PHE SEQRES 12 B 393 PRO PHE LEU VAL LYS LEU GLU PHE SER PHE LYS ASP ASN SEQRES 13 B 393 SER ASN LEU TYR MET VAL MET GLU TYR VAL ALA GLY GLY SEQRES 14 B 393 GLU MET PHE SER HIS LEU ARG ARG ILE GLY ARG PHE SER SEQRES 15 B 393 GLU PRO HIS ALA ARG PHE TYR ALA ALA GLN ILE VAL LEU SEQRES 16 B 393 THR PHE GLU TYR LEU HIS SER LEU ASP LEU ILE TYR ARG SEQRES 17 B 393 ASP LEU LYS PRO GLU ASN LEU LEU ILE ASP GLN GLN GLY SEQRES 18 B 393 TYR ILE GLN VAL THR ASP PHE GLY PHE ALA LYS ARG VAL SEQRES 19 B 393 LYS GLY ARG THR TRP TPO LEU CYS GLY THR PRO GLU TYR SEQRES 20 B 393 LEU ALA PRO GLU ILE ILE LEU SER LYS GLY TYR ASN LYS SEQRES 21 B 393 ALA VAL ASP TRP TRP ALA LEU GLY VAL LEU ILE TYR GLU SEQRES 22 B 393 MET ALA ALA GLY TYR PRO PRO PHE PHE ALA ASP GLN PRO SEQRES 23 B 393 ILE GLN ILE TYR GLU LYS ILE VAL SER GLY LYS VAL ARG SEQRES 24 B 393 PHE PRO SER HIS PHE SER SER ASP LEU LYS ASP LEU LEU SEQRES 25 B 393 ARG ASN LEU LEU GLN VAL ASP LEU THR LYS ARG PHE GLY SEQRES 26 B 393 ASN LEU LYS ASN GLY VAL ASN ASP ILE LYS ASN HIS LYS SEQRES 27 B 393 TRP PHE ALA THR THR ASP TRP ILE ALA ILE TYR GLN ARG SEQRES 28 B 393 LYS VAL GLU ALA PRO PHE ILE PRO LYS PHE LYS GLY PRO SEQRES 29 B 393 GLY ASP THR SER ASN PHE ASP ASP TYR GLU GLU GLU GLU SEQRES 30 B 393 ILE ARG VAL SER ILE ASN GLU LYS CYS GLY LYS GLU PHE SEQRES 31 B 393 THR GLU PHE MODRES 5X3F TPO B 336 THR MODIFIED RESIDUE HET TPO B 336 11 HETNAM TPO PHOSPHOTHREONINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 2 TPO C4 H10 N O6 P HELIX 1 AA1 SER A 9 LYS A 23 1 15 HELIX 2 AA2 ASP A 27 VAL A 46 1 20 HELIX 3 AA3 GLY A 49 ARG A 54 1 6 HELIX 4 AA4 ARG A 54 ALA A 59 1 6 HELIX 5 AA5 LEU A 88 ILE A 93 1 6 HELIX 6 AA6 ASN A 100 GLN A 114 1 15 HELIX 7 AA7 ASP A 123 THR A 137 1 15 HELIX 8 AA8 SER A 149 SER A 166 1 18 HELIX 9 AA9 PRO A 167 GLY A 169 5 3 HELIX 10 AB1 GLY A 186 ALA A 190 5 5 HELIX 11 AB2 LYS A 193 LYS A 198 1 6 HELIX 12 AB3 PRO A 199 MET A 201 5 3 HELIX 13 AB4 ASN A 214 THR A 228 1 15 HELIX 14 AB5 GLY A 252 PHE A 264 1 13 HELIX 15 AB6 PHE A 284 HIS A 288 5 5 HELIX 16 AB7 ALA A 299 GLY A 304 5 6 HELIX 17 AB8 GLU A 316 SER A 320 1 5 HELIX 18 AB9 VAL A 321 ASP A 324 5 4 HELIX 19 AC1 ASN A 336 GLN A 353 1 18 HELIX 20 AC2 ASN A 354 TYR A 377 1 24 HELIX 21 AC3 ASP A 397 GLN A 411 1 15 HELIX 22 AC4 THR A 434 HIS A 463 1 30 HELIX 23 AC5 ASN A 468 ASP A 482 1 15 HELIX 24 AC6 PRO A 483 SER A 486 5 4 HELIX 25 AC7 ALA A 487 ASP A 498 1 12 HELIX 26 AC8 GLU B 108 THR B 118 1 11 HELIX 27 AC9 ASN B 123 ASP B 137 1 15 HELIX 28 AD1 GLN B 140 THR B 171 1 32 HELIX 29 AD2 GLN B 178 ASP B 180 5 3 HELIX 30 AD3 LYS B 215 LYS B 222 1 8 HELIX 31 AD4 GLN B 223 VAL B 237 1 15 HELIX 32 AD5 GLU B 266 GLY B 275 1 10 HELIX 33 AD6 SER B 278 LEU B 299 1 22 HELIX 34 AD7 LYS B 307 GLU B 309 5 3 HELIX 35 AD8 THR B 340 LEU B 344 5 5 HELIX 36 AD9 ALA B 345 SER B 351 1 7 HELIX 37 AE1 LYS B 356 GLY B 373 1 18 HELIX 38 AE2 PRO B 382 SER B 391 1 10 HELIX 39 AE3 SER B 401 LEU B 412 1 12 HELIX 40 AE4 VAL B 427 ASN B 432 1 6 HELIX 41 AE5 HIS B 433 ALA B 437 5 5 HELIX 42 AE6 ASP B 440 ARG B 447 1 8 SHEET 1 AA1 4 GLU A 67 ALA A 70 0 SHEET 2 AA1 4 THR A 75 ASP A 78 -1 O VAL A 77 N GLN A 69 SHEET 3 AA1 4 GLU A 83 ASP A 86 -1 O PHE A 84 N LEU A 76 SHEET 4 AA1 4 VAL A 413 LEU A 414 1 O LEU A 414 N ILE A 85 SHEET 1 AA2 7 LEU A 141 CYS A 147 0 SHEET 2 AA2 7 GLY A 310 THR A 315 -1 O GLY A 310 N CYS A 147 SHEET 3 AA2 7 ILE A 295 LEU A 298 -1 N LEU A 298 O ALA A 311 SHEET 4 AA2 7 LEU A 267 ASP A 271 1 N LEU A 270 O CYS A 297 SHEET 5 AA2 7 VAL A 232 LEU A 237 1 N VAL A 235 O ILE A 269 SHEET 6 AA2 7 THR A 172 SER A 177 1 N THR A 172 O ALA A 233 SHEET 7 AA2 7 PHE A 207 PRO A 211 1 O ARG A 208 N PHE A 173 SHEET 1 AA3 3 VAL A 381 LYS A 387 0 SHEET 2 AA3 3 LEU A 390 PHE A 395 -1 O GLU A 394 N GLU A 383 SHEET 3 AA3 3 THR A 424 ILE A 427 -1 O ILE A 427 N MET A 391 SHEET 1 AA4 5 PHE B 182 THR B 190 0 SHEET 2 AA4 5 GLY B 194 HIS B 201 -1 O VAL B 196 N GLY B 189 SHEET 3 AA4 5 HIS B 207 ASP B 214 -1 O ILE B 212 N ARG B 195 SHEET 4 AA4 5 ASN B 254 GLU B 260 -1 O MET B 259 N ALA B 209 SHEET 5 AA4 5 LEU B 245 LYS B 250 -1 N PHE B 249 O TYR B 256 SHEET 1 AA5 2 LEU B 301 ILE B 302 0 SHEET 2 AA5 2 LYS B 328 ARG B 329 -1 O LYS B 328 N ILE B 302 SHEET 1 AA6 2 LEU B 311 ILE B 313 0 SHEET 2 AA6 2 ILE B 319 VAL B 321 -1 O GLN B 320 N LEU B 312 LINK NZ LYS A 55 O VAL A 415 1555 1555 1.45 LINK C TRP B 335 N TPO B 336 1555 1555 1.32 LINK C TPO B 336 N LEU B 337 1555 1555 1.33 CISPEP 1 MET A 201 PRO A 202 0 2.30 CRYST1 140.518 153.496 205.714 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007117 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006515 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004861 0.00000