HEADER RNA BINDING PROTEIN 09-FEB-17 5X3Y TITLE REFINED SOLUTION STRUCTURE OF MUSASHI1 RBD2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN MUSASHI HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 109-200; COMPND 5 SYNONYM: MUSASHI-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MSI1, MSI1H; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS RNA-BINDING PROTEIN, RRM, RBD, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.IWAOKA,T.NAGATA,K.TSUDA,T.IMAI,H.OKANO,N.KOBAYASHI,M.KATAHIRA REVDAT 2 01-MAY-24 5X3Y 1 REMARK REVDAT 1 13-DEC-17 5X3Y 0 JRNL AUTH R.IWAOKA,T.NAGATA,K.TSUDA,T.IMAI,H.OKANO,N.KOBAYASHI, JRNL AUTH 2 M.KATAHIRA JRNL TITL STRUCTURAL INSIGHT INTO THE RECOGNITION OF R(UAG) BY JRNL TITL 2 MUSASHI-1 RBD2, AND CONSTRUCTION OF A MODEL OF MUSASHI-1 JRNL TITL 3 RBD1-2 BOUND TO THE MINIMUM TARGET RNA JRNL REF MOLECULES V. 22 2017 JRNL REFN ESSN 1420-3049 JRNL PMID 28753936 JRNL DOI 10.3390/MOLECULES22071207 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5X3Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1300002606. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 250 UM [U-100% 13C; U-100% 15N] REMARK 210 MSI1 RBD2, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D HNCO; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D HCCH- REMARK 210 TOCSY; 3D HCCH-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, NMRPIPE, MAGRO, NMRVIEW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 199 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 2 ARG A 199 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 3 ARG A 150 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 4 ARG A 197 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 8 ARG A 199 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 9 ARG A 199 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 10 ARG A 197 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 10 ARG A 199 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 11 ARG A 148 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 15 ARG A 150 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 176 -12.50 62.78 REMARK 500 1 VAL A 189 -28.26 -152.02 REMARK 500 1 THR A 193 35.97 -71.24 REMARK 500 2 ASN A 176 -13.41 64.89 REMARK 500 3 SER A 106 20.50 -146.31 REMARK 500 3 HIS A 107 48.85 -77.70 REMARK 500 3 ASN A 176 -13.99 63.78 REMARK 500 3 ARG A 199 146.88 65.13 REMARK 500 4 LYS A 109 56.01 -152.79 REMARK 500 4 ASN A 176 -12.97 63.25 REMARK 500 5 ASN A 176 -12.32 64.92 REMARK 500 6 LYS A 109 31.68 -151.67 REMARK 500 6 ASN A 176 -11.05 63.06 REMARK 500 6 VAL A 189 42.49 -73.70 REMARK 500 7 SER A 117 -168.80 -128.92 REMARK 500 7 ILE A 174 -127.85 -121.52 REMARK 500 7 ASN A 175 73.67 -69.14 REMARK 500 7 ASN A 176 -30.28 61.41 REMARK 500 7 LYS A 187 12.93 -140.76 REMARK 500 8 SER A 106 25.39 -140.45 REMARK 500 8 ASN A 176 -9.75 63.31 REMARK 500 9 LYS A 109 31.54 -89.78 REMARK 500 9 ASN A 176 -13.88 63.74 REMARK 500 9 GLN A 185 71.76 49.87 REMARK 500 9 GLU A 188 46.05 -78.88 REMARK 500 10 HIS A 107 38.26 -145.95 REMARK 500 10 ASN A 176 -7.73 63.07 REMARK 500 11 LYS A 109 50.87 -150.16 REMARK 500 11 ASN A 176 -7.10 62.12 REMARK 500 11 SER A 191 59.80 -145.01 REMARK 500 11 THR A 193 -48.69 62.88 REMARK 500 12 ASN A 176 -8.01 62.43 REMARK 500 12 GLN A 185 74.67 54.29 REMARK 500 12 THR A 193 41.10 -73.19 REMARK 500 13 LYS A 109 32.58 -98.03 REMARK 500 13 ASN A 147 17.42 54.77 REMARK 500 13 ASN A 176 -18.22 65.86 REMARK 500 13 THR A 193 173.02 61.82 REMARK 500 13 ARG A 197 -33.69 64.20 REMARK 500 14 ASN A 176 -7.91 62.97 REMARK 500 15 ASN A 176 -10.59 62.97 REMARK 500 15 SER A 191 86.76 -153.32 REMARK 500 16 ASN A 176 -10.70 63.22 REMARK 500 17 THR A 146 -14.89 -144.29 REMARK 500 17 ASN A 176 -13.62 65.97 REMARK 500 18 ASN A 176 -5.47 61.68 REMARK 500 18 LYS A 187 30.40 -140.81 REMARK 500 19 ASN A 176 -8.04 62.64 REMARK 500 19 SER A 195 -47.74 -159.00 REMARK 500 20 ASN A 176 -8.61 63.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 11 HIS A 149 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36058 RELATED DB: BMRB REMARK 900 REFINED SOLUTION STRUCTURE OF MUSASHI1 RBD2 REMARK 900 RELATED ID: 5X3Z RELATED DB: PDB DBREF 5X3Y A 109 200 UNP Q61474 MSI1H_MOUSE 109 200 SEQADV 5X3Y GLY A 105 UNP Q61474 EXPRESSION TAG SEQADV 5X3Y SER A 106 UNP Q61474 EXPRESSION TAG SEQADV 5X3Y HIS A 107 UNP Q61474 EXPRESSION TAG SEQADV 5X3Y MET A 108 UNP Q61474 EXPRESSION TAG SEQRES 1 A 96 GLY SER HIS MET LYS LYS ILE PHE VAL GLY GLY LEU SER SEQRES 2 A 96 VAL ASN THR THR VAL GLU ASP VAL LYS HIS TYR PHE GLU SEQRES 3 A 96 GLN PHE GLY LYS VAL ASP ASP ALA MET LEU MET PHE ASP SEQRES 4 A 96 LYS THR THR ASN ARG HIS ARG GLY PHE GLY PHE VAL THR SEQRES 5 A 96 PHE GLU SER GLU ASP ILE VAL GLU LYS VAL CYS GLU ILE SEQRES 6 A 96 HIS PHE HIS GLU ILE ASN ASN LYS MET VAL GLU CYS LYS SEQRES 7 A 96 LYS ALA GLN PRO LYS GLU VAL MET SER PRO THR GLY SER SEQRES 8 A 96 ALA ARG GLY ARG SER HELIX 1 AA1 THR A 121 GLU A 130 1 10 HELIX 2 AA2 SER A 159 CYS A 167 1 9 SHEET 1 AA1 5 VAL A 135 PHE A 142 0 SHEET 2 AA1 5 HIS A 149 PHE A 157 -1 O PHE A 154 N MET A 139 SHEET 3 AA1 5 LYS A 110 GLY A 114 -1 N VAL A 113 O GLY A 153 SHEET 4 AA1 5 LYS A 177 LYS A 183 -1 O LYS A 182 N PHE A 112 SHEET 5 AA1 5 HIS A 172 ILE A 174 -1 N ILE A 174 O LYS A 177 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1