HEADER TRANSPORT PROTEIN 09-FEB-17 5X40 TITLE STRUCTURE OF A CBIO DIMER BOUND WITH AMPPCP COMPND MOL_ID: 1; COMPND 2 MOLECULE: COBALT ABC TRANSPORTER ATP-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CBIO; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER CAPSULATUS; SOURCE 3 ORGANISM_TAXID: 1061; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ECF TRANSPORTER, ATPASE, DIMER, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.BAO,X.QI,J.WANG,P.ZHANG REVDAT 5 27-MAR-24 5X40 1 LINK REVDAT 4 04-OCT-17 5X40 1 REMARK REVDAT 3 17-MAY-17 5X40 1 JRNL REVDAT 2 19-APR-17 5X40 1 TITLE AUTHOR REVDAT 1 05-APR-17 5X40 0 JRNL AUTH Z.BAO,X.QI,S.HONG,K.XU,F.HE,M.ZHANG,J.CHEN,D.CHAO,W.ZHAO, JRNL AUTH 2 D.LI,J.WANG,P.ZHANG JRNL TITL STRUCTURE AND MECHANISM OF A GROUP-I COBALT ENERGY COUPLING JRNL TITL 2 FACTOR TRANSPORTER JRNL REF CELL RES. V. 27 675 2017 JRNL REFN ISSN 1748-7838 JRNL PMID 28322252 JRNL DOI 10.1038/CR.2017.38 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 101153 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1991 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6714 - 3.4930 1.00 7463 147 0.1607 0.1534 REMARK 3 2 3.4930 - 2.7731 1.00 7173 143 0.1710 0.1816 REMARK 3 3 2.7731 - 2.4228 1.00 7120 145 0.1646 0.1676 REMARK 3 4 2.4228 - 2.2013 1.00 7102 141 0.1523 0.1762 REMARK 3 5 2.2013 - 2.0436 1.00 7085 143 0.1453 0.1924 REMARK 3 6 2.0436 - 1.9231 1.00 7067 143 0.1475 0.2007 REMARK 3 7 1.9231 - 1.8268 1.00 7052 135 0.1426 0.1887 REMARK 3 8 1.8268 - 1.7473 1.00 7013 147 0.1415 0.2041 REMARK 3 9 1.7473 - 1.6800 1.00 7055 143 0.1383 0.1634 REMARK 3 10 1.6800 - 1.6221 1.00 7005 134 0.1365 0.1707 REMARK 3 11 1.6221 - 1.5714 1.00 7040 142 0.1407 0.1866 REMARK 3 12 1.5714 - 1.5264 1.00 6986 139 0.1506 0.1753 REMARK 3 13 1.5264 - 1.4863 1.00 6977 144 0.1700 0.2506 REMARK 3 14 1.4863 - 1.4500 1.00 7024 145 0.1862 0.2419 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4262 REMARK 3 ANGLE : 1.424 5804 REMARK 3 CHIRALITY : 0.381 702 REMARK 3 PLANARITY : 0.008 744 REMARK 3 DIHEDRAL : 13.165 1556 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5X40 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1300002891. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NFPSS REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR555 FLAT PANEL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101455 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.64M SODIUM ACETATE, PH 4.6, 18% PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.66950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.42450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.19950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.42450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.66950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.19950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 SER A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 SER B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N MET A 1 O HOH A 401 1.21 REMARK 500 NH1 ARG B 73 O HOH B 401 1.63 REMARK 500 O HOH B 578 O HOH B 589 1.93 REMARK 500 O HOH A 632 O HOH A 676 1.94 REMARK 500 O HOH B 477 O HOH B 607 1.94 REMARK 500 O HOH B 614 O HOH B 641 1.94 REMARK 500 O HOH B 582 O HOH B 605 1.95 REMARK 500 O HOH B 563 O HOH B 567 1.96 REMARK 500 O HOH B 644 O HOH B 679 1.97 REMARK 500 OE1 GLN A 178 O HOH A 402 1.99 REMARK 500 O HOH B 576 O HOH B 583 1.99 REMARK 500 O LEU B 110 O HOH B 402 2.00 REMARK 500 O HOH A 599 O HOH A 607 2.02 REMARK 500 O HOH A 548 O HOH A 618 2.02 REMARK 500 O HOH B 597 O HOH B 668 2.04 REMARK 500 O HOH B 597 O HOH B 644 2.05 REMARK 500 NH1 ARG A 214 O HOH A 403 2.06 REMARK 500 O HOH A 467 O HOH A 601 2.07 REMARK 500 O HOH B 615 O HOH B 683 2.08 REMARK 500 NH1 ARG B 61 O HOH B 403 2.09 REMARK 500 O HOH A 538 O HOH A 554 2.09 REMARK 500 NH2 ARG A 187 O HOH A 404 2.09 REMARK 500 O HOH B 535 O HOH B 604 2.10 REMARK 500 O HOH B 613 O HOH B 652 2.14 REMARK 500 O HOH A 519 O HOH B 461 2.16 REMARK 500 O HOH B 644 O HOH B 651 2.16 REMARK 500 OG SER B 131 O HOH B 404 2.18 REMARK 500 O HOH B 471 O HOH B 601 2.18 REMARK 500 O HOH B 646 O HOH B 664 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 640 O HOH B 642 4555 1.81 REMARK 500 O HOH A 634 O HOH B 593 4455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 47 CA - CB - CG ANGL. DEV. = -14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 97 -168.83 -161.03 REMARK 500 MET A 140 57.73 -90.68 REMARK 500 ALA A 258 114.18 -17.29 REMARK 500 PRO A 259 87.19 -54.75 REMARK 500 GLU A 260 -5.03 104.48 REMARK 500 MET B 140 56.51 -93.01 REMARK 500 ALA B 258 -113.14 47.75 REMARK 500 GLU B 260 -6.45 118.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 HIS A 139 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 687 DISTANCE = 6.03 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 45 OG REMARK 620 2 GLN A 88 OE1 76.6 REMARK 620 3 ACP A 302 O3G 141.5 97.5 REMARK 620 4 ACP A 302 O1B 78.0 141.2 84.7 REMARK 620 5 HOH B 490 O 111.7 78.8 104.0 138.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 45 OG REMARK 620 2 ACP B 302 O2G 159.7 REMARK 620 3 ACP B 302 O2B 76.6 92.0 REMARK 620 4 HOH B 441 O 98.9 100.3 105.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACP A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACP B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5X3X RELATED DB: PDB REMARK 900 RELATED ID: 5X41 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THE PROTEIN WAS NOT AVAILABLE AT THE UNIPROT REMARK 999 KNOWLEDGEBASE DATABASE (UNIPROTKB) AT THE TIME OF DEPOSITION. REMARK 999 RESIDUE 166 (E166Q) REPRESENT MUTATION. DBREF 5X40 A -11 280 PDB 5X40 5X40 -11 280 DBREF 5X40 B -11 280 PDB 5X40 5X40 -11 280 SEQRES 1 A 292 MET GLY SER HIS HIS HIS HIS HIS HIS SER GLY SER MET SEQRES 2 A 292 THR PRO ILE LEU ALA ALA GLU ALA LEU THR TYR ALA PHE SEQRES 3 A 292 PRO GLY GLY VAL LYS ALA LEU ASP ASP LEU SER LEU ALA SEQRES 4 A 292 VAL PRO LYS GLY GLU SER LEU ALA ILE LEU GLY PRO ASN SEQRES 5 A 292 GLY ALA GLY LYS SER THR LEU LEU LEU HIS LEU ASN GLY SEQRES 6 A 292 THR LEU ARG PRO GLN SER GLY ARG VAL LEU LEU GLY GLY SEQRES 7 A 292 THR ALA THR GLY HIS SER ARG LYS ASP LEU THR GLY TRP SEQRES 8 A 292 ARG ARG ARG VAL GLY LEU VAL LEU GLN ASP ALA ASP ASP SEQRES 9 A 292 GLN LEU PHE ALA THR THR VAL PHE GLU ASP VAL SER PHE SEQRES 10 A 292 GLY PRO LEU ASN LEU GLY LEU SER GLU ALA GLU ALA ARG SEQRES 11 A 292 ALA ARG VAL GLU GLU ALA LEU ALA ALA LEU SER ILE SER SEQRES 12 A 292 ASP LEU ARG ASP ARG PRO THR HIS MET LEU SER GLY GLY SEQRES 13 A 292 GLN LYS ARG ARG VAL ALA ILE ALA GLY ALA VAL ALA MET SEQRES 14 A 292 ARG PRO GLU VAL LEU LEU LEU ASP GLN PRO THR ALA GLY SEQRES 15 A 292 LEU ASP LEU ALA GLY THR GLU GLN LEU LEU THR LEU LEU SEQRES 16 A 292 ARG GLY LEU ARG ALA ALA GLY MET THR LEU VAL PHE SER SEQRES 17 A 292 THR HIS ASP VAL GLU LEU ALA ALA ALA LEU ALA ASP ARG SEQRES 18 A 292 VAL ALA LEU PHE ARG THR GLY ARG VAL LEU ALA GLU GLY SEQRES 19 A 292 ALA ALA GLU ALA VAL LEU SER ASP ARG ALA THR LEU ALA SEQRES 20 A 292 LYS VAL ALA LEU ARG PRO PRO LEU VAL ILE ASP LEU ALA SEQRES 21 A 292 LEU LEU ALA ARG ASP HIS GLY LEU LEU ALA PRO GLU ALA SEQRES 22 A 292 PRO LEU PRO LYS THR ARG ASP ALA LEU ALA ALA GLN MET SEQRES 23 A 292 ALA GLY TRP THR ARG ARG SEQRES 1 B 292 MET GLY SER HIS HIS HIS HIS HIS HIS SER GLY SER MET SEQRES 2 B 292 THR PRO ILE LEU ALA ALA GLU ALA LEU THR TYR ALA PHE SEQRES 3 B 292 PRO GLY GLY VAL LYS ALA LEU ASP ASP LEU SER LEU ALA SEQRES 4 B 292 VAL PRO LYS GLY GLU SER LEU ALA ILE LEU GLY PRO ASN SEQRES 5 B 292 GLY ALA GLY LYS SER THR LEU LEU LEU HIS LEU ASN GLY SEQRES 6 B 292 THR LEU ARG PRO GLN SER GLY ARG VAL LEU LEU GLY GLY SEQRES 7 B 292 THR ALA THR GLY HIS SER ARG LYS ASP LEU THR GLY TRP SEQRES 8 B 292 ARG ARG ARG VAL GLY LEU VAL LEU GLN ASP ALA ASP ASP SEQRES 9 B 292 GLN LEU PHE ALA THR THR VAL PHE GLU ASP VAL SER PHE SEQRES 10 B 292 GLY PRO LEU ASN LEU GLY LEU SER GLU ALA GLU ALA ARG SEQRES 11 B 292 ALA ARG VAL GLU GLU ALA LEU ALA ALA LEU SER ILE SER SEQRES 12 B 292 ASP LEU ARG ASP ARG PRO THR HIS MET LEU SER GLY GLY SEQRES 13 B 292 GLN LYS ARG ARG VAL ALA ILE ALA GLY ALA VAL ALA MET SEQRES 14 B 292 ARG PRO GLU VAL LEU LEU LEU ASP GLN PRO THR ALA GLY SEQRES 15 B 292 LEU ASP LEU ALA GLY THR GLU GLN LEU LEU THR LEU LEU SEQRES 16 B 292 ARG GLY LEU ARG ALA ALA GLY MET THR LEU VAL PHE SER SEQRES 17 B 292 THR HIS ASP VAL GLU LEU ALA ALA ALA LEU ALA ASP ARG SEQRES 18 B 292 VAL ALA LEU PHE ARG THR GLY ARG VAL LEU ALA GLU GLY SEQRES 19 B 292 ALA ALA GLU ALA VAL LEU SER ASP ARG ALA THR LEU ALA SEQRES 20 B 292 LYS VAL ALA LEU ARG PRO PRO LEU VAL ILE ASP LEU ALA SEQRES 21 B 292 LEU LEU ALA ARG ASP HIS GLY LEU LEU ALA PRO GLU ALA SEQRES 22 B 292 PRO LEU PRO LYS THR ARG ASP ALA LEU ALA ALA GLN MET SEQRES 23 B 292 ALA GLY TRP THR ARG ARG HET MG A 301 1 HET ACP A 302 31 HET MG B 301 1 HET ACP B 302 31 HETNAM MG MAGNESIUM ION HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 ACP 2(C11 H18 N5 O12 P3) FORMUL 7 HOH *564(H2 O) HELIX 1 AA1 GLY A 43 ASN A 52 1 10 HELIX 2 AA2 SER A 72 ARG A 82 1 11 HELIX 3 AA3 ASP A 89 GLN A 93 5 5 HELIX 4 AA4 THR A 98 LEU A 110 1 13 HELIX 5 AA5 SER A 113 LEU A 128 1 16 HELIX 6 AA6 SER A 129 ARG A 134 5 6 HELIX 7 AA7 SER A 142 ALA A 156 1 15 HELIX 8 AA8 ASP A 172 ALA A 189 1 18 HELIX 9 AA9 ASP A 199 ALA A 207 1 9 HELIX 10 AB1 ALA A 224 ASP A 230 1 7 HELIX 11 AB2 ASP A 230 LYS A 236 1 7 HELIX 12 AB3 PRO A 242 HIS A 254 1 13 HELIX 13 AB4 THR A 266 ALA A 275 1 10 HELIX 14 AB5 GLY B 43 ASN B 52 1 10 HELIX 15 AB6 SER B 72 ARG B 82 1 11 HELIX 16 AB7 ASP B 89 LEU B 94 5 6 HELIX 17 AB8 THR B 98 LEU B 110 1 13 HELIX 18 AB9 SER B 113 LEU B 128 1 16 HELIX 19 AC1 ILE B 130 ARG B 134 5 5 HELIX 20 AC2 SER B 142 ALA B 156 1 15 HELIX 21 AC3 ASP B 172 ALA B 189 1 18 HELIX 22 AC4 ASP B 199 ALA B 207 1 9 HELIX 23 AC5 ALA B 224 SER B 229 1 6 HELIX 24 AC6 ASP B 230 LYS B 236 1 7 HELIX 25 AC7 PRO B 242 GLY B 255 1 14 HELIX 26 AC8 THR B 266 ALA B 275 1 10 SHEET 1 AA1 4 LYS A 19 VAL A 28 0 SHEET 2 AA1 4 LEU A 5 ALA A 13 -1 N LEU A 5 O VAL A 28 SHEET 3 AA1 4 SER A 59 LEU A 64 -1 O LEU A 63 N ALA A 6 SHEET 4 AA1 4 THR A 67 ALA A 68 -1 O THR A 67 N LEU A 64 SHEET 1 AA2 6 VAL A 83 VAL A 86 0 SHEET 2 AA2 6 VAL A 161 ASP A 165 1 O LEU A 163 N GLY A 84 SHEET 3 AA2 6 THR A 192 SER A 196 1 O THR A 192 N LEU A 162 SHEET 4 AA2 6 SER A 33 LEU A 37 1 N LEU A 34 O LEU A 193 SHEET 5 AA2 6 ARG A 209 ARG A 214 1 O PHE A 213 N LEU A 37 SHEET 6 AA2 6 ARG A 217 ALA A 223 -1 O ALA A 220 N LEU A 212 SHEET 1 AA3 2 TRP A 277 ARG A 279 0 SHEET 2 AA3 2 TRP B 277 ARG B 279 -1 O THR B 278 N THR A 278 SHEET 1 AA4 4 LYS B 19 VAL B 28 0 SHEET 2 AA4 4 LEU B 5 ALA B 13 -1 N ALA B 7 O LEU B 26 SHEET 3 AA4 4 SER B 59 LEU B 64 -1 O LEU B 63 N ALA B 6 SHEET 4 AA4 4 THR B 67 ALA B 68 -1 O THR B 67 N LEU B 64 SHEET 1 AA5 6 VAL B 83 VAL B 86 0 SHEET 2 AA5 6 VAL B 161 ASP B 165 1 O LEU B 163 N GLY B 84 SHEET 3 AA5 6 THR B 192 SER B 196 1 O THR B 192 N LEU B 162 SHEET 4 AA5 6 SER B 33 LEU B 37 1 N LEU B 34 O LEU B 193 SHEET 5 AA5 6 ARG B 209 ARG B 214 1 O PHE B 213 N LEU B 37 SHEET 6 AA5 6 ARG B 217 ALA B 223 -1 O LEU B 219 N LEU B 212 LINK OG SER A 45 MG MG A 301 1555 1555 2.27 LINK OE1 GLN A 88 MG MG A 301 1555 1555 2.34 LINK MG MG A 301 O3G ACP A 302 1555 1555 2.24 LINK MG MG A 301 O1B ACP A 302 1555 1555 2.45 LINK MG MG A 301 O HOH B 490 1555 1555 2.33 LINK OG SER B 45 MG MG B 301 1555 1555 2.14 LINK MG MG B 301 O2G ACP B 302 1555 1555 2.12 LINK MG MG B 301 O2B ACP B 302 1555 1555 2.48 LINK MG MG B 301 O HOH B 441 1555 1555 2.21 CISPEP 1 ALA B 258 PRO B 259 0 11.54 SITE 1 AC1 4 SER A 45 GLN A 88 ACP A 302 HOH B 490 SITE 1 AC2 27 PHE A 14 ALA A 20 PRO A 39 ASN A 40 SITE 2 AC2 27 GLY A 41 ALA A 42 GLY A 43 LYS A 44 SITE 3 AC2 27 SER A 45 THR A 46 GLN A 88 GLN A 166 SITE 4 AC2 27 HIS A 198 MG A 301 HOH A 426 HOH A 438 SITE 5 AC2 27 HOH A 458 HOH A 504 HOH A 556 ARG B 136 SITE 6 AC2 27 HIS B 139 MET B 140 LEU B 141 SER B 142 SITE 7 AC2 27 GLY B 143 GLY B 144 GLN B 145 SITE 1 AC3 4 SER B 45 GLN B 88 ACP B 302 HOH B 441 SITE 1 AC4 26 ARG A 136 HIS A 139 MET A 140 LEU A 141 SITE 2 AC4 26 SER A 142 GLY A 144 GLN A 145 PHE B 14 SITE 3 AC4 26 VAL B 18 ALA B 20 PRO B 39 ASN B 40 SITE 4 AC4 26 GLY B 41 ALA B 42 GLY B 43 LYS B 44 SITE 5 AC4 26 SER B 45 THR B 46 GLN B 88 GLN B 166 SITE 6 AC4 26 HIS B 198 MG B 301 HOH B 418 HOH B 441 SITE 7 AC4 26 HOH B 485 HOH B 504 CRYST1 71.339 74.399 106.849 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014018 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013441 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009359 0.00000