HEADER PROTEIN TRANSPORT 09-FEB-17 5X42 TITLE STRUCTURE OF DOTL(590-659)-DOTN DERIVED FROM LEGIONELLA PNEUMOPHILA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DOTN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 7-201; COMPND 5 SYNONYM: ICMJ PROTEIN,TYPE IV SECRETION PROTEIN ICMJ,UNCHARACTERISED COMPND 6 PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: ICMO (DOTL); COMPND 11 CHAIN: B, D; COMPND 12 FRAGMENT: UNP RESIDUES 590-659; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: ICMJ (DOTN); COMPND 16 CHAIN: C; COMPND 17 FRAGMENT: UNP RESIDUES 2-214; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 GENE: DOTN, ICMJ, ERS240541_02347, ERS253249_00846, PTVF89_00655; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA SOURCE 9 (STRAIN PHILADELPHIA 1 / ATCC 33152 / DSM 7513); SOURCE 10 ORGANISM_TAXID: 272624; SOURCE 11 STRAIN: PHILADELPHIA 1 / ATCC 33152 / DSM 7513; SOURCE 12 GENE: ICMO, LPG0446; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA; SOURCE 17 ORGANISM_TAXID: 272624; SOURCE 18 STRAIN: PHILADELPHIA 1 / ATCC 33152 / DSM 7513; SOURCE 19 GENE: ICMJ, LPG0455; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TYPE IV SECRETION SYSTEM, COUPLING PROTEIN COMPLEX, EFFECTOR KEYWDS 2 TRANSLOCATION, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR M.J.KWAK,J.D.KIM,B.H.OH REVDAT 3 27-MAR-24 5X42 1 REMARK REVDAT 2 02-AUG-17 5X42 1 JRNL REVDAT 1 14-JUN-17 5X42 0 JRNL AUTH M.J.KWAK,J.D.KIM,H.KIM,C.KIM,J.W.BOWMAN,S.KIM,K.JOO,J.LEE, JRNL AUTH 2 K.S.JIN,Y.G.KIM,N.K.LEE,J.U.JUNG,B.H.OH JRNL TITL ARCHITECTURE OF THE TYPE IV COUPLING PROTEIN COMPLEX OF JRNL TITL 2 LEGIONELLA PNEUMOPHILA JRNL REF NAT MICROBIOL V. 2 17114 2017 JRNL REFN ESSN 2058-5276 JRNL PMID 28714967 JRNL DOI 10.1038/NMICROBIOL.2017.114 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.720 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 104008 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.980 REMARK 3 FREE R VALUE TEST SET COUNT : 3099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5982 - 5.0419 0.99 4904 152 0.1708 0.2077 REMARK 3 2 5.0419 - 4.0025 1.00 4909 151 0.1467 0.1634 REMARK 3 3 4.0025 - 3.4968 1.00 4961 153 0.1786 0.2465 REMARK 3 4 3.4968 - 3.1771 0.99 4869 152 0.2089 0.3006 REMARK 3 5 3.1771 - 2.9494 0.99 4886 150 0.2278 0.2976 REMARK 3 6 2.9494 - 2.7755 0.98 4872 149 0.2230 0.2737 REMARK 3 7 2.7755 - 2.6366 0.98 4874 150 0.2198 0.2690 REMARK 3 8 2.6366 - 2.5218 0.98 4790 147 0.2334 0.3309 REMARK 3 9 2.5218 - 2.4247 0.97 4822 147 0.2184 0.2629 REMARK 3 10 2.4247 - 2.3410 0.97 4796 147 0.2233 0.2530 REMARK 3 11 2.3410 - 2.2678 0.96 4759 140 0.2273 0.2720 REMARK 3 12 2.2678 - 2.2030 0.96 4725 137 0.2347 0.2826 REMARK 3 13 2.2030 - 2.1450 0.95 4713 148 0.2414 0.3455 REMARK 3 14 2.1450 - 2.0927 0.94 4644 143 0.2419 0.2888 REMARK 3 15 2.0927 - 2.0451 0.92 4493 138 0.2570 0.2253 REMARK 3 16 2.0451 - 2.0016 0.91 4532 139 0.2637 0.2954 REMARK 3 17 2.0016 - 1.9616 0.89 4386 135 0.2725 0.3022 REMARK 3 18 1.9616 - 1.9245 0.86 4332 133 0.3021 0.3359 REMARK 3 19 1.9245 - 1.8902 0.83 4081 124 0.3254 0.4063 REMARK 3 20 1.8902 - 1.8581 0.80 3954 125 0.3298 0.3897 REMARK 3 21 1.8581 - 1.8281 0.78 3833 118 0.3512 0.3851 REMARK 3 22 1.8281 - 1.8000 0.77 3774 121 0.3550 0.3731 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4184 REMARK 3 ANGLE : 0.840 5638 REMARK 3 CHIRALITY : 0.049 624 REMARK 3 PLANARITY : 0.005 731 REMARK 3 DIHEDRAL : 13.785 2523 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SF FILE CONTAINS FRIEDEL PAIRS UNDER REMARK 3 I/F_MINUS AND I/F_PLUS COLUMNS. REMARK 4 REMARK 4 5X42 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1300002890. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2828 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 104008 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.27200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM MALONATE (PH 4.0), REMARK 280 10%(V/V) PEG3350, 20%(V/V) GLYCEROL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.34150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.21750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.11000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.21750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.34150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.11000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL B 590 REMARK 465 ASN C 2 REMARK 465 VAL C 3 REMARK 465 ASN C 4 REMARK 465 GLN C 5 REMARK 465 THR C 6 REMARK 465 MET C 7 REMARK 465 ALA C 8 REMARK 465 ASP C 9 REMARK 465 ASN C 10 REMARK 465 GLN C 11 REMARK 465 GLN C 12 REMARK 465 ARG C 13 REMARK 465 LEU C 209 REMARK 465 GLU C 210 REMARK 465 GLU C 211 REMARK 465 ILE C 212 REMARK 465 ALA C 213 REMARK 465 ASP C 214 REMARK 465 VAL D 590 REMARK 465 GLU D 591 REMARK 465 PRO D 592 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 13 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 591 CG CD OE1 OE2 REMARK 470 GLN B 604 CG CD OE1 NE2 REMARK 470 ASN B 658 O REMARK 470 GLU C 35 CG CD OE1 OE2 REMARK 470 TYR C 40 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS C 43 CG CD CE NZ REMARK 470 ARG C 49 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 60 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 198 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 199 CG CD CE NZ REMARK 470 PRO D 593 CG CD REMARK 470 PRO D 594 CG CD REMARK 470 ASP D 595 CG OD1 OD2 REMARK 470 ASN D 658 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR C 28 OD2 ASP C 64 2.07 REMARK 500 O HOH A 459 O HOH A 507 2.10 REMARK 500 OH TYR B 597 O HOH B 701 2.11 REMARK 500 O HOH B 735 O HOH B 763 2.12 REMARK 500 OD2 ASP B 616 O HOH B 702 2.13 REMARK 500 O VAL C 175 O HOH C 401 2.14 REMARK 500 O HOH A 463 O HOH A 545 2.15 REMARK 500 OE1 GLU A 158 O HOH A 401 2.16 REMARK 500 NH1 ARG A 194 O HOH A 402 2.16 REMARK 500 OE1 GLU B 613 O HOH B 703 2.16 REMARK 500 O HOH C 420 O HOH C 435 2.17 REMARK 500 O HOH A 506 O HOH B 776 2.17 REMARK 500 NH1 ARG A 49 O HOH A 403 2.18 REMARK 500 O HOH C 499 O HOH C 516 2.18 REMARK 500 O HOH A 550 O HOH A 573 2.19 REMARK 500 O HOH C 455 O HOH C 490 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 735 O HOH C 505 2455 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO D 593 N - CA - CB ANGL. DEV. = 7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE C 33 74.00 -115.53 REMARK 500 ASP C 69 22.34 -71.97 REMARK 500 ASN C 74 76.67 -101.30 REMARK 500 ASN C 75 33.26 -85.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 577 DISTANCE = 6.04 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 52 SG REMARK 620 2 CYS A 55 SG 112.8 REMARK 620 3 CYS A 84 SG 118.5 108.7 REMARK 620 4 CYS A 87 SG 99.2 105.8 110.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 52 SG REMARK 620 2 CYS C 55 SG 111.9 REMARK 620 3 CYS C 84 SG 113.5 107.0 REMARK 620 4 CYS C 87 SG 101.2 111.4 111.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5X1U RELATED DB: PDB REMARK 900 RELATED ID: 5X1H RELATED DB: PDB REMARK 900 RELATED ID: 5X1E RELATED DB: PDB DBREF 5X42 A 13 207 UNP O54599 O54599_LEGPN 7 201 DBREF 5X42 B 590 659 UNP Q5ZYC6 Q5ZYC6_LEGPH 590 659 DBREF 5X42 C 2 214 UNP Q5ZYB7 Q5ZYB7_LEGPH 2 214 DBREF 5X42 D 590 659 UNP Q5ZYC6 Q5ZYC6_LEGPH 590 659 SEQADV 5X42 ALA A 35 UNP O54599 GLU 29 ENGINEERED MUTATION SEQADV 5X42 ALA A 60 UNP O54599 ARG 54 ENGINEERED MUTATION SEQADV 5X42 ALA A 207 UNP O54599 SER 201 ENGINEERED MUTATION SEQRES 1 A 195 ARG CYS GLU LEU LYS LEU ILE ALA SER PRO GLY SER TRP SEQRES 2 A 195 ARG LEU TYR SER ALA ARG LYS ILE ASP ALA ARG PHE LYS SEQRES 3 A 195 SER TYR GLU GLN LYS ILE PHE GLN ARG ASP ARG TYR THR SEQRES 4 A 195 CYS GLN PHE CYS GLY PHE GLN ALA ALA LEU TYR GLN ASP SEQRES 5 A 195 ILE VAL ASN LEU ASP GLY ASP TYR THR ASN ASN ARG LEU SEQRES 6 A 195 SER ASN LEU VAL THR ALA CYS CYS PHE CYS ALA GLN CYS SEQRES 7 A 195 PHE PHE VAL GLU SER VAL GLY VAL GLY GLY TYR GLY GLY SEQRES 8 A 195 GLY THR LEU ILE TYR LEU PRO GLU LEU THR GLN ALA GLU SEQRES 9 A 195 LEU ASN SER LEU CYS HIS VAL LEU PHE CYS ALA ILE THR SEQRES 10 A 195 ASN ASP THR GLY TYR LYS SER SER ALA GLN ASN ILE TYR SEQRES 11 A 195 ARG SER PHE LYS PHE ARG SER GLN ILE VAL GLU GLU LYS SEQRES 12 A 195 PHE GLY GLU GLY THR SER ASP PRO ALA ILE PHE GLY GLN SEQRES 13 A 195 LEU MET ILE ASP SER GLY VAL ASN SER GLU GLU ILE ARG SEQRES 14 A 195 GLU LYS LEU PHE LYS ASN ILE ARG LEU LEU PRO SER ARG SEQRES 15 A 195 ALA LYS PHE ARG LYS GLN ILE GLU LYS TRP ALA ALA ALA SEQRES 1 B 70 VAL GLU PRO PRO PRO ASP ASP TYR LEU MET LYS LEU GLN SEQRES 2 B 70 LYS GLN LEU ALA SER PHE GLN SER ILE LEU GLU SER GLY SEQRES 3 B 70 ASP LEU SER ILE ASN LYS ALA VAL GLU ASN GLU GLU ILE SEQRES 4 B 70 THR LEU ILE SER LYS ALA LEU LYS GLU SER THR ILE VAL SEQRES 5 B 70 GLU PRO ILE GLU ARG GLY VAL ALA ALA LEU ILE ALA PHE SEQRES 6 B 70 HIS GLY GLN ASN GLU SEQRES 1 C 213 ASN VAL ASN GLN THR MET ALA ASP ASN GLN GLN ARG CYS SEQRES 2 C 213 GLU LEU LYS LEU ILE ALA SER PRO GLY SER TRP ARG LEU SEQRES 3 C 213 TYR SER ALA ARG LYS ILE ASP GLU ARG PHE LYS SER TYR SEQRES 4 C 213 GLU GLN LYS ILE PHE GLN ARG ASP ARG TYR THR CYS GLN SEQRES 5 C 213 PHE CYS GLY PHE GLN ALA ARG LEU TYR GLN ASP ILE VAL SEQRES 6 C 213 ASN LEU ASP GLY ASP TYR THR ASN ASN ARG LEU SER ASN SEQRES 7 C 213 LEU VAL THR ALA CYS CYS PHE CYS ALA GLN CYS PHE PHE SEQRES 8 C 213 VAL GLU SER VAL GLY VAL GLY GLY TYR GLY GLY GLY THR SEQRES 9 C 213 LEU ILE TYR LEU PRO GLU LEU THR GLN ALA GLU LEU ASN SEQRES 10 C 213 SER LEU CYS HIS VAL LEU PHE CYS ALA ILE THR ASN ASP SEQRES 11 C 213 THR GLY TYR LYS SER SER ALA GLN ASN ILE TYR ARG SER SEQRES 12 C 213 PHE LYS PHE ARG SER GLN ILE VAL GLU GLU LYS PHE GLY SEQRES 13 C 213 GLU GLY THR SER ASP PRO ALA ILE PHE GLY GLN LEU MET SEQRES 14 C 213 ILE ASP SER GLY VAL ASN SER GLU GLU ILE ARG GLU LYS SEQRES 15 C 213 LEU PHE LYS ASN ILE ARG LEU LEU PRO SER ARG ALA LYS SEQRES 16 C 213 PHE ARG LYS GLN ILE GLU LYS TRP ALA ALA SER ALA LEU SEQRES 17 C 213 GLU GLU ILE ALA ASP SEQRES 1 D 70 VAL GLU PRO PRO PRO ASP ASP TYR LEU MET LYS LEU GLN SEQRES 2 D 70 LYS GLN LEU ALA SER PHE GLN SER ILE LEU GLU SER GLY SEQRES 3 D 70 ASP LEU SER ILE ASN LYS ALA VAL GLU ASN GLU GLU ILE SEQRES 4 D 70 THR LEU ILE SER LYS ALA LEU LYS GLU SER THR ILE VAL SEQRES 5 D 70 GLU PRO ILE GLU ARG GLY VAL ALA ALA LEU ILE ALA PHE SEQRES 6 D 70 HIS GLY GLN ASN GLU HET ZN A 301 1 HET ZN C 301 1 HETNAM ZN ZINC ION FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *411(H2 O) HELIX 1 AA1 GLY A 23 ASP A 34 1 12 HELIX 2 AA2 ASP A 34 ASP A 48 1 15 HELIX 3 AA3 ARG A 76 SER A 78 5 3 HELIX 4 AA4 CYS A 84 GLN A 89 1 6 HELIX 5 AA5 CYS A 90 VAL A 96 5 7 HELIX 6 AA6 THR A 113 ASN A 130 1 18 HELIX 7 AA7 TYR A 134 ARG A 148 1 15 HELIX 8 AA8 ARG A 148 GLY A 157 1 10 HELIX 9 AA9 ASP A 162 SER A 173 1 12 HELIX 10 AB1 SER A 177 PHE A 185 1 9 HELIX 11 AB2 PHE A 197 ALA A 207 1 11 HELIX 12 AB3 ASP B 596 SER B 614 1 19 HELIX 13 AB4 ASN B 625 SER B 638 1 14 HELIX 14 AB5 GLU B 642 ASN B 658 1 17 HELIX 15 AB6 GLY C 23 ILE C 33 1 11 HELIX 16 AB7 ASP C 34 ASP C 48 1 15 HELIX 17 AB8 ARG C 76 SER C 78 5 3 HELIX 18 AB9 CYS C 84 GLN C 89 1 6 HELIX 19 AC1 CYS C 90 VAL C 96 5 7 HELIX 20 AC2 THR C 113 ASN C 130 1 18 HELIX 21 AC3 TYR C 134 ARG C 148 1 15 HELIX 22 AC4 ARG C 148 GLY C 157 1 10 HELIX 23 AC5 ASP C 162 SER C 173 1 12 HELIX 24 AC6 SER C 177 LYS C 186 1 10 HELIX 25 AC7 ARG C 194 LYS C 196 5 3 HELIX 26 AC8 PHE C 197 ALA C 205 1 9 HELIX 27 AC9 ASP D 596 SER D 614 1 19 HELIX 28 AD1 ASN D 625 GLU D 637 1 13 HELIX 29 AD2 GLU D 642 ASN D 658 1 17 SHEET 1 AA1 2 ASP A 64 ASN A 67 0 SHEET 2 AA1 2 LEU A 80 ALA A 83 -1 O ALA A 83 N ASP A 64 SHEET 1 AA2 2 GLY A 104 TYR A 108 0 SHEET 2 AA2 2 ILE A 188 PRO A 192 -1 O LEU A 191 N THR A 105 SHEET 1 AA3 2 ASP C 64 ASN C 67 0 SHEET 2 AA3 2 LEU C 80 ALA C 83 -1 O ALA C 83 N ASP C 64 SHEET 1 AA4 2 GLY C 104 TYR C 108 0 SHEET 2 AA4 2 ILE C 188 PRO C 192 -1 O LEU C 191 N THR C 105 LINK SG CYS A 52 ZN ZN A 301 1555 1555 2.36 LINK SG CYS A 55 ZN ZN A 301 1555 1555 2.41 LINK SG CYS A 84 ZN ZN A 301 1555 1555 2.23 LINK SG CYS A 87 ZN ZN A 301 1555 1555 2.45 LINK SG CYS C 52 ZN ZN C 301 1555 1555 2.34 LINK SG CYS C 55 ZN ZN C 301 1555 1555 2.35 LINK SG CYS C 84 ZN ZN C 301 1555 1555 2.34 LINK SG CYS C 87 ZN ZN C 301 1555 1555 2.38 CISPEP 1 ASN B 658 GLU B 659 0 1.39 SITE 1 AC1 4 CYS A 52 CYS A 55 CYS A 84 CYS A 87 SITE 1 AC2 4 CYS C 52 CYS C 55 CYS C 84 CYS C 87 CRYST1 50.683 72.220 170.435 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019730 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013847 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005867 0.00000