HEADER HYDROLASE 13-FEB-17 5X4J TITLE THE CRYSTAL STRUCTURE OF PYROCOCCUS FURIOSUS RECJ (ZN-SOAKING) COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RECJ; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 186497; SOURCE 4 STRAIN: ATCC 43587 / DSM 3638 / JCM 8422 / VC1; SOURCE 5 GENE: PF2055; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ARCHAEAL RECJ, CMG INTERACTION DOMAIN, NUCLEASE ACTIVITY, GINS, KEYWDS 2 INTERACTION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.J.LI,G.S.YI,F.YU,H.ZHOU,J.N.CHEN,C.Y.XU,F.P.WANG,X.XIAO,J.H.HE, AUTHOR 2 X.P.LIU REVDAT 2 18-DEC-19 5X4J 1 JRNL REVDAT 1 14-FEB-18 5X4J 0 JRNL AUTH M.J.LI,G.S.YI,F.YU,H.ZHOU,J.N.CHEN,C.Y.XU,F.P.WANG,X.XIAO, JRNL AUTH 2 J.H.HE,X.P.LIU JRNL TITL THE CRYSTAL STRUCTURE OF PYROCOCCUS FURIOSUS RECJ IMPLICATES JRNL TITL 2 IT AS AN ANCESTOR OF EUKARYOTIC CDC45. JRNL REF NUCLEIC ACIDS RES. V. 45 12551 2017 JRNL REFN ESSN 1362-4962 JRNL PMID 30053256 JRNL DOI 10.1093/NAR/GKX887 REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.490 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.7 REMARK 3 NUMBER OF REFLECTIONS : 45535 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 2223 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8972 - 5.1370 0.91 2946 151 0.1782 0.1874 REMARK 3 2 5.1370 - 4.0787 0.91 2965 124 0.1530 0.1577 REMARK 3 3 4.0787 - 3.5635 0.92 2998 144 0.1623 0.2266 REMARK 3 4 3.5635 - 3.2379 0.94 3050 157 0.1664 0.2152 REMARK 3 5 3.2379 - 3.0059 0.96 3086 181 0.1886 0.2205 REMARK 3 6 3.0059 - 2.8287 0.96 3078 193 0.1847 0.2195 REMARK 3 7 2.8287 - 2.6871 0.96 3071 180 0.1889 0.2289 REMARK 3 8 2.6871 - 2.5701 0.94 3078 139 0.1820 0.1995 REMARK 3 9 2.5701 - 2.4712 0.93 2991 162 0.1858 0.2323 REMARK 3 10 2.4712 - 2.3859 0.89 2860 159 0.1840 0.2291 REMARK 3 11 2.3859 - 2.3113 0.83 2685 148 0.1896 0.1962 REMARK 3 12 2.3113 - 2.2453 0.74 2378 120 0.1854 0.2373 REMARK 3 13 2.2453 - 2.1862 0.70 2339 88 0.1916 0.2121 REMARK 3 14 2.1862 - 2.1328 0.66 2117 99 0.1872 0.2691 REMARK 3 15 2.1328 - 2.0844 0.60 1947 88 0.1934 0.2461 REMARK 3 16 2.0844 - 2.0400 0.53 1723 90 0.2025 0.2233 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3773 REMARK 3 ANGLE : 0.432 5085 REMARK 3 CHIRALITY : 0.039 564 REMARK 3 PLANARITY : 0.002 661 REMARK 3 DIHEDRAL : 10.127 2288 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.0115 -3.9476 87.0482 REMARK 3 T TENSOR REMARK 3 T11: 0.1498 T22: 0.1164 REMARK 3 T33: 0.0949 T12: 0.0008 REMARK 3 T13: -0.0131 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 2.4748 L22: 1.4314 REMARK 3 L33: 2.1360 L12: -0.0760 REMARK 3 L13: 0.3146 L23: 0.0340 REMARK 3 S TENSOR REMARK 3 S11: 0.0058 S12: -0.2972 S13: -0.0232 REMARK 3 S21: 0.2377 S22: -0.0013 S23: 0.0130 REMARK 3 S31: -0.0472 S32: -0.1312 S33: -0.0140 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 136 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.4414 1.8115 72.5518 REMARK 3 T TENSOR REMARK 3 T11: 0.0950 T22: 0.0783 REMARK 3 T33: 0.0991 T12: -0.0135 REMARK 3 T13: -0.0081 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 1.9511 L22: 1.1504 REMARK 3 L33: 3.0006 L12: -0.8025 REMARK 3 L13: 1.4950 L23: -0.5389 REMARK 3 S TENSOR REMARK 3 S11: -0.2157 S12: 0.1270 S13: 0.2688 REMARK 3 S21: 0.0948 S22: 0.0389 S23: -0.0443 REMARK 3 S31: -0.2140 S32: 0.1334 S33: 0.1333 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 281 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.5757 -1.2410 52.0167 REMARK 3 T TENSOR REMARK 3 T11: 0.1318 T22: 0.1170 REMARK 3 T33: 0.0961 T12: 0.0097 REMARK 3 T13: 0.0340 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 1.3012 L22: 0.6329 REMARK 3 L33: 2.2800 L12: -0.2502 REMARK 3 L13: 1.2461 L23: -0.2660 REMARK 3 S TENSOR REMARK 3 S11: 0.0151 S12: 0.2111 S13: 0.0459 REMARK 3 S21: -0.1075 S22: -0.0229 S23: 0.0081 REMARK 3 S31: 0.0109 S32: 0.1843 S33: 0.0098 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 282 THROUGH 397 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.8736 -12.9982 65.8035 REMARK 3 T TENSOR REMARK 3 T11: 0.1426 T22: 0.1111 REMARK 3 T33: 0.1265 T12: -0.0039 REMARK 3 T13: 0.0119 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 2.3094 L22: 0.7240 REMARK 3 L33: 0.9425 L12: -0.3254 REMARK 3 L13: -0.3938 L23: 0.3238 REMARK 3 S TENSOR REMARK 3 S11: -0.0572 S12: 0.1753 S13: -0.2414 REMARK 3 S21: 0.0625 S22: 0.0325 S23: 0.0418 REMARK 3 S31: 0.1214 S32: -0.0248 S33: 0.0130 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 398 THROUGH 469 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.7239 -7.0439 80.3653 REMARK 3 T TENSOR REMARK 3 T11: 0.1401 T22: 0.1873 REMARK 3 T33: 0.1400 T12: 0.0047 REMARK 3 T13: 0.0581 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 2.1157 L22: 2.7081 REMARK 3 L33: 1.3351 L12: -0.0371 REMARK 3 L13: -0.2025 L23: 0.1659 REMARK 3 S TENSOR REMARK 3 S11: -0.1169 S12: -0.2580 S13: -0.1262 REMARK 3 S21: 0.3260 S22: 0.0889 S23: 0.1369 REMARK 3 S31: 0.0522 S32: -0.0460 S33: 0.0156 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE ENTRY CONTAINS FRIEDEL PAIRS IN REMARK 3 F_PLUS/MINUS COLUMNS AND I_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 5X4J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1300002923. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45535 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 13.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS REMARK 200 AND I_PLUS/MINUS COLUMNS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4.3% W/V PEG 2000 MME, 50 MM BICINE PH REMARK 280 8.8, 28.6% W/V PEG 600, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.67350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -22 REMARK 465 SER A -21 REMARK 465 TYR A -20 REMARK 465 TYR A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 LEU A -12 REMARK 465 GLU A -11 REMARK 465 SER A -10 REMARK 465 THR A -9 REMARK 465 SER A -8 REMARK 465 LEU A -7 REMARK 465 TYR A -6 REMARK 465 LYS A -5 REMARK 465 LYS A -4 REMARK 465 ALA A -3 REMARK 465 GLY A -2 REMARK 465 LYS A 470 REMARK 465 GLY A 471 REMARK 465 GLY A 472 REMARK 465 ASP A 473 REMARK 465 LYS A 474 REMARK 465 SER A 475 REMARK 465 GLU A 476 REMARK 465 SER A 477 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 117 CE NZ REMARK 480 ASN A 311 OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 603 O HOH A 879 1.90 REMARK 500 OD1 ASP A 256 O HOH A 601 1.99 REMARK 500 O HOH A 914 O HOH A 916 2.02 REMARK 500 O HOH A 862 O HOH A 892 2.09 REMARK 500 OE2 GLU A 217 O HOH A 602 2.10 REMARK 500 O HOH A 921 O HOH A 925 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 782 O HOH A 894 1554 1.91 REMARK 500 O HOH A 606 O HOH A 917 2758 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 134 145.40 -172.78 REMARK 500 ASN A 215 76.56 -152.50 REMARK 500 GLU A 220 -22.23 70.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 941 DISTANCE = 6.44 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 36 OD2 REMARK 620 2 HIS A 106 NE2 107.9 REMARK 620 3 ASP A 165 OD2 100.4 87.1 REMARK 620 4 HOH A 883 O 115.4 121.1 120.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 107 NE2 REMARK 620 2 HOH A 878 O 95.4 REMARK 620 3 HOH A 883 O 95.9 167.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 174 ND1 REMARK 620 2 HOH A 725 O 83.7 REMARK 620 3 HOH A 856 O 93.7 174.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5X4H RELATED DB: PDB REMARK 900 RELATED ID: 5X4I RELATED DB: PDB REMARK 900 RELATED ID: 5X4K RELATED DB: PDB DBREF 5X4J A 1 477 UNP Q8TZE0 Q8TZE0_PYRFU 1 477 SEQADV 5X4J MSE A -22 UNP Q8TZE0 EXPRESSION TAG SEQADV 5X4J SER A -21 UNP Q8TZE0 EXPRESSION TAG SEQADV 5X4J TYR A -20 UNP Q8TZE0 EXPRESSION TAG SEQADV 5X4J TYR A -19 UNP Q8TZE0 EXPRESSION TAG SEQADV 5X4J HIS A -18 UNP Q8TZE0 EXPRESSION TAG SEQADV 5X4J HIS A -17 UNP Q8TZE0 EXPRESSION TAG SEQADV 5X4J HIS A -16 UNP Q8TZE0 EXPRESSION TAG SEQADV 5X4J HIS A -15 UNP Q8TZE0 EXPRESSION TAG SEQADV 5X4J HIS A -14 UNP Q8TZE0 EXPRESSION TAG SEQADV 5X4J HIS A -13 UNP Q8TZE0 EXPRESSION TAG SEQADV 5X4J LEU A -12 UNP Q8TZE0 EXPRESSION TAG SEQADV 5X4J GLU A -11 UNP Q8TZE0 EXPRESSION TAG SEQADV 5X4J SER A -10 UNP Q8TZE0 EXPRESSION TAG SEQADV 5X4J THR A -9 UNP Q8TZE0 EXPRESSION TAG SEQADV 5X4J SER A -8 UNP Q8TZE0 EXPRESSION TAG SEQADV 5X4J LEU A -7 UNP Q8TZE0 EXPRESSION TAG SEQADV 5X4J TYR A -6 UNP Q8TZE0 EXPRESSION TAG SEQADV 5X4J LYS A -5 UNP Q8TZE0 EXPRESSION TAG SEQADV 5X4J LYS A -4 UNP Q8TZE0 EXPRESSION TAG SEQADV 5X4J ALA A -3 UNP Q8TZE0 EXPRESSION TAG SEQADV 5X4J GLY A -2 UNP Q8TZE0 EXPRESSION TAG SEQADV 5X4J SER A -1 UNP Q8TZE0 EXPRESSION TAG SEQADV 5X4J HIS A 0 UNP Q8TZE0 EXPRESSION TAG SEQADV 5X4J ALA A 83 UNP Q8TZE0 ASP 83 ENGINEERED MUTATION SEQRES 1 A 500 MSE SER TYR TYR HIS HIS HIS HIS HIS HIS LEU GLU SER SEQRES 2 A 500 THR SER LEU TYR LYS LYS ALA GLY SER HIS MSE ASP LYS SEQRES 3 A 500 GLU GLY PHE LEU ASN LYS VAL ARG GLU ALA VAL ASP VAL SEQRES 4 A 500 VAL LYS LEU HIS ILE GLU LEU GLY HIS THR ILE ARG ILE SEQRES 5 A 500 ILE SER HIS ARG ASP ALA ASP GLY ILE THR SER ALA ALA SEQRES 6 A 500 ILE LEU ALA LYS ALA LEU GLY ARG GLU GLY ALA SER PHE SEQRES 7 A 500 HIS ILE SER ILE VAL LYS GLN VAL SER GLU ASP LEU LEU SEQRES 8 A 500 ARG GLU LEU LYS ASP GLU ASP TYR LYS ILE PHE ILE PHE SEQRES 9 A 500 SER ALA LEU GLY SER GLY SER LEU SER LEU ILE LYS GLU SEQRES 10 A 500 TYR LEU LYS GLU LYS THR VAL ILE ILE LEU ASP HIS HIS SEQRES 11 A 500 PRO PRO GLU ASN VAL LYS LEU GLU GLU LYS HIS ILE LEU SEQRES 12 A 500 VAL ASN PRO VAL GLN PHE GLY ALA ASN SER VAL ARG ASP SEQRES 13 A 500 LEU SER GLY SER GLY VAL THR TYR PHE PHE ALA ARG GLU SEQRES 14 A 500 LEU ASN GLU LYS ASN ARG ASP LEU ALA TYR ILE ALA ILE SEQRES 15 A 500 VAL GLY ALA VAL GLY ASP MSE GLN GLU ASN ASP GLY VAL SEQRES 16 A 500 PHE HIS GLY MSE ASN LEU ASP ILE ILE GLU ASP GLY LYS SEQRES 17 A 500 SER LEU GLY ILE LEU GLU VAL LYS LYS GLU LEU ARG LEU SEQRES 18 A 500 PHE GLY ARG GLU THR ARG PRO LEU TYR GLN MSE LEU ALA SEQRES 19 A 500 TYR ALA THR ASN PRO GLU ILE PRO GLU VAL THR GLY ASP SEQRES 20 A 500 GLU ARG LYS ALA ILE GLU TRP LEU LYS ASN LYS GLY PHE SEQRES 21 A 500 ASN PRO GLU LYS LYS TYR TRP GLU LEU SER GLU GLU GLU SEQRES 22 A 500 LYS LYS LYS LEU HIS ASP PHE LEU ILE ILE HIS MSE ILE SEQRES 23 A 500 LYS HIS GLY ALA GLY LYS GLU ASP ILE ASP ARG LEU ILE SEQRES 24 A 500 GLY ASP VAL VAL ILE SER PRO LEU TYR PRO GLU GLY ASP SEQRES 25 A 500 PRO ARG HIS GLU ALA ARG GLU PHE ALA THR LEU LEU ASN SEQRES 26 A 500 ALA THR GLY ARG LEU ASN LEU GLY ASN LEU GLY VAL ALA SEQRES 27 A 500 VAL CYS LEU GLY ASP GLU GLU ALA PHE ARG LYS ALA LEU SEQRES 28 A 500 LYS MSE VAL GLU ASP TYR LYS ARG GLU GLN ILE GLU ALA SEQRES 29 A 500 ARG LYS TRP LEU LEU GLN ASN TRP ASN SER GLU VAL TRP SEQRES 30 A 500 GLU GLY ASP HIS VAL TYR VAL LEU TYR VAL GLY LYS SER SEQRES 31 A 500 ILE ARG ASP THR LEU VAL GLY ILE ALA ALA SER MSE ALA SEQRES 32 A 500 ILE ASN ALA GLY LEU ALA ASP PRO GLU LYS PRO VAL ILE SEQRES 33 A 500 VAL PHE ALA ASP THR ASP GLU ASP PRO ASN LEU LEU LYS SEQRES 34 A 500 GLY SER ALA ARG THR THR GLU ARG ALA LEU ALA LYS GLY SEQRES 35 A 500 TYR ASN LEU GLY GLU ALA LEU ARG LYS ALA ALA GLU LEU SEQRES 36 A 500 VAL ASN GLY GLU GLY GLY GLY HIS ALA ILE ALA ALA GLY SEQRES 37 A 500 ILE ARG ILE PRO ARG ALA ARG LEU ALA GLU PHE ARG LYS SEQRES 38 A 500 LEU ILE ASP LYS ILE LEU GLY GLU GLN VAL SER LYS GLY SEQRES 39 A 500 GLY ASP LYS SER GLU SER MODRES 5X4J MSE A 1 MET MODIFIED RESIDUE MODRES 5X4J MSE A 166 MET MODIFIED RESIDUE MODRES 5X4J MSE A 176 MET MODIFIED RESIDUE MODRES 5X4J MSE A 209 MET MODIFIED RESIDUE MODRES 5X4J MSE A 262 MET MODIFIED RESIDUE MODRES 5X4J MSE A 330 MET MODIFIED RESIDUE MODRES 5X4J MSE A 379 MET MODIFIED RESIDUE HET MSE A 1 8 HET MSE A 166 8 HET MSE A 176 8 HET MSE A 209 8 HET MSE A 262 8 HET MSE A 330 8 HET MSE A 379 8 HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET ZN A 504 1 HET CL A 505 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 ZN 4(ZN 2+) FORMUL 6 CL CL 1- FORMUL 7 HOH *341(H2 O) HELIX 1 AA1 ASP A 2 LEU A 23 1 22 HELIX 2 AA2 ASP A 34 GLU A 51 1 18 HELIX 3 AA3 SER A 64 GLU A 74 1 11 HELIX 4 AA4 GLY A 85 GLY A 87 5 3 HELIX 5 AA5 SER A 88 LEU A 96 1 9 HELIX 6 AA6 ASN A 122 GLY A 127 5 6 HELIX 7 AA7 SER A 135 ASN A 148 1 14 HELIX 8 AA8 GLU A 149 ASP A 153 5 5 HELIX 9 AA9 LEU A 154 ASP A 165 1 12 HELIX 10 AB1 MSE A 176 LEU A 187 1 12 HELIX 11 AB2 PRO A 205 TYR A 212 1 8 HELIX 12 AB3 ASP A 224 LYS A 235 1 12 HELIX 13 AB4 LYS A 242 LEU A 246 5 5 HELIX 14 AB5 SER A 247 HIS A 265 1 19 HELIX 15 AB6 GLY A 268 LEU A 275 1 8 HELIX 16 AB7 ASP A 289 HIS A 292 5 4 HELIX 17 AB8 GLU A 293 LEU A 307 1 15 HELIX 18 AB9 LEU A 309 LEU A 318 1 10 HELIX 19 AC1 ASP A 320 LYS A 329 1 10 HELIX 20 AC2 MSE A 330 VAL A 353 1 24 HELIX 21 AC3 ARG A 369 THR A 371 5 3 HELIX 22 AC4 LEU A 372 ALA A 383 1 12 HELIX 23 AC5 THR A 412 LYS A 418 1 7 HELIX 24 AC6 ASN A 421 VAL A 433 1 13 HELIX 25 AC7 ARG A 452 VAL A 468 1 17 SHEET 1 AA1 5 PHE A 55 VAL A 60 0 SHEET 2 AA1 5 ILE A 27 HIS A 32 1 N SER A 31 O VAL A 60 SHEET 3 AA1 5 ILE A 78 SER A 82 1 O ILE A 80 N ARG A 28 SHEET 4 AA1 5 THR A 100 LEU A 104 1 O LEU A 104 N PHE A 81 SHEET 5 AA1 5 HIS A 118 VAL A 121 1 O VAL A 121 N ILE A 103 SHEET 1 AA2 2 GLU A 191 LEU A 196 0 SHEET 2 AA2 2 ILE A 276 ILE A 281 -1 O VAL A 279 N LYS A 193 SHEET 1 AA3 6 TRP A 354 GLU A 355 0 SHEET 2 AA3 6 TYR A 360 TYR A 363 -1 O VAL A 361 N TRP A 354 SHEET 3 AA3 6 VAL A 392 ASP A 397 1 O PHE A 395 N LEU A 362 SHEET 4 AA3 6 LEU A 404 ARG A 410 -1 O LYS A 406 N ALA A 396 SHEET 5 AA3 6 ALA A 443 PRO A 449 -1 O ALA A 444 N ALA A 409 SHEET 6 AA3 6 GLU A 436 GLY A 439 -1 N GLU A 436 O ARG A 447 LINK C HIS A 0 N MSE A 1 1555 1555 1.33 LINK NE2 HIS A 0 ZN ZN A 503 1555 1555 2.26 LINK C MSE A 1 N ASP A 2 1555 1555 1.33 LINK OD2 ASP A 36 ZN ZN A 501 1555 1555 2.16 LINK NE2 HIS A 106 ZN ZN A 501 1555 1555 2.16 LINK NE2 HIS A 107 ZN ZN A 502 1555 1555 2.21 LINK C ASP A 165 N MSE A 166 1555 1555 1.33 LINK OD2 ASP A 165 ZN ZN A 501 1555 1555 1.96 LINK C MSE A 166 N GLN A 167 1555 1555 1.33 LINK ND1 HIS A 174 ZN ZN A 504 1555 1555 2.17 LINK C GLY A 175 N MSE A 176 1555 1555 1.33 LINK C MSE A 176 N ASN A 177 1555 1555 1.34 LINK C GLN A 208 N MSE A 209 1555 1555 1.33 LINK C MSE A 209 N LEU A 210 1555 1555 1.34 LINK C HIS A 261 N MSE A 262 1555 1555 1.33 LINK C MSE A 262 N ILE A 263 1555 1555 1.34 LINK C LYS A 329 N MSE A 330 1555 1555 1.33 LINK C MSE A 330 N VAL A 331 1555 1555 1.33 LINK C SER A 378 N MSE A 379 1555 1555 1.33 LINK C MSE A 379 N ALA A 380 1555 1555 1.34 LINK ZN ZN A 501 O HOH A 883 1555 1555 2.10 LINK ZN ZN A 502 O HOH A 878 1555 1555 2.27 LINK ZN ZN A 502 O HOH A 883 1555 1555 2.32 LINK ZN ZN A 504 O HOH A 725 1555 1555 2.00 LINK ZN ZN A 504 O HOH A 856 1555 1555 2.08 CISPEP 1 ASN A 215 PRO A 216 0 1.22 SITE 1 AC1 4 ASP A 36 HIS A 106 ASP A 165 HOH A 883 SITE 1 AC2 4 HIS A 107 HOH A 857 HOH A 878 HOH A 883 SITE 1 AC3 1 HIS A 0 SITE 1 AC4 3 HIS A 174 HOH A 725 HOH A 856 SITE 1 AC5 1 SER A 408 CRYST1 58.614 67.347 60.511 90.00 112.54 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017061 0.000000 0.007079 0.00000 SCALE2 0.000000 0.014848 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017892 0.00000