data_5X4S # _entry.id 5X4S # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5X4S WWPDB D_1300002916 # _pdbx_database_related.content_type unspecified _pdbx_database_related.db_id 5X4R _pdbx_database_related.db_name PDB _pdbx_database_related.details . # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5X4S _pdbx_database_status.recvd_initial_deposition_date 2017-02-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yuan, Y.' 1 ? 'Zhang, Y.' 2 ? 'Qi, J.' 3 ? 'Shi, Y.' 4 ? 'Gao, G.F.' 5 0000-0002-3869-615X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 8 _citation.language ? _citation.page_first 15092 _citation.page_last 15092 _citation.title 'Cryo-EM structures of MERS-CoV and SARS-CoV spike glycoproteins reveal the dynamic receptor binding domains' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/ncomms15092 _citation.pdbx_database_id_PubMed 28393837 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yuan, Y.' 1 ? primary 'Cao, D.' 2 ? primary 'Zhang, Y.' 3 ? primary 'Ma, J.' 4 ? primary 'Qi, J.' 5 ? primary 'Wang, Q.' 6 ? primary 'Lu, G.' 7 ? primary 'Wu, Y.' 8 ? primary 'Yan, J.' 9 ? primary 'Shi, Y.' 10 ? primary 'Zhang, X.' 11 ? primary 'Gao, G.F.' 12 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 5X4S _cell.details ? _cell.formula_units_Z ? _cell.length_a 73.291 _cell.length_a_esd ? _cell.length_b 73.291 _cell.length_b_esd ? _cell.length_c 240.263 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5X4S _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Spike glycoprotein' 32395.363 1 ? ? 'UNP residues 14-292' ? 2 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ? ? ? ? 3 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 4 water nat water 18.015 84 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'S glycoprotein,E2,Peplomer protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATE KSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVS EKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDTWGTSAAAYF VGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;SDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFDNPVIPFKDGIYFAATE KSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVS EKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDTWGTSAAAYF VGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASP n 1 3 LEU n 1 4 ASP n 1 5 ARG n 1 6 CYS n 1 7 THR n 1 8 THR n 1 9 PHE n 1 10 ASP n 1 11 ASP n 1 12 VAL n 1 13 GLN n 1 14 ALA n 1 15 PRO n 1 16 ASN n 1 17 TYR n 1 18 THR n 1 19 GLN n 1 20 HIS n 1 21 THR n 1 22 SER n 1 23 SER n 1 24 MET n 1 25 ARG n 1 26 GLY n 1 27 VAL n 1 28 TYR n 1 29 TYR n 1 30 PRO n 1 31 ASP n 1 32 GLU n 1 33 ILE n 1 34 PHE n 1 35 ARG n 1 36 SER n 1 37 ASP n 1 38 THR n 1 39 LEU n 1 40 TYR n 1 41 LEU n 1 42 THR n 1 43 GLN n 1 44 ASP n 1 45 LEU n 1 46 PHE n 1 47 LEU n 1 48 PRO n 1 49 PHE n 1 50 TYR n 1 51 SER n 1 52 ASN n 1 53 VAL n 1 54 THR n 1 55 GLY n 1 56 PHE n 1 57 HIS n 1 58 THR n 1 59 ILE n 1 60 ASN n 1 61 HIS n 1 62 THR n 1 63 PHE n 1 64 ASP n 1 65 ASN n 1 66 PRO n 1 67 VAL n 1 68 ILE n 1 69 PRO n 1 70 PHE n 1 71 LYS n 1 72 ASP n 1 73 GLY n 1 74 ILE n 1 75 TYR n 1 76 PHE n 1 77 ALA n 1 78 ALA n 1 79 THR n 1 80 GLU n 1 81 LYS n 1 82 SER n 1 83 ASN n 1 84 VAL n 1 85 VAL n 1 86 ARG n 1 87 GLY n 1 88 TRP n 1 89 VAL n 1 90 PHE n 1 91 GLY n 1 92 SER n 1 93 THR n 1 94 MET n 1 95 ASN n 1 96 ASN n 1 97 LYS n 1 98 SER n 1 99 GLN n 1 100 SER n 1 101 VAL n 1 102 ILE n 1 103 ILE n 1 104 ILE n 1 105 ASN n 1 106 ASN n 1 107 SER n 1 108 THR n 1 109 ASN n 1 110 VAL n 1 111 VAL n 1 112 ILE n 1 113 ARG n 1 114 ALA n 1 115 CYS n 1 116 ASN n 1 117 PHE n 1 118 GLU n 1 119 LEU n 1 120 CYS n 1 121 ASP n 1 122 ASN n 1 123 PRO n 1 124 PHE n 1 125 PHE n 1 126 ALA n 1 127 VAL n 1 128 SER n 1 129 LYS n 1 130 PRO n 1 131 MET n 1 132 GLY n 1 133 THR n 1 134 GLN n 1 135 THR n 1 136 HIS n 1 137 THR n 1 138 MET n 1 139 ILE n 1 140 PHE n 1 141 ASP n 1 142 ASN n 1 143 ALA n 1 144 PHE n 1 145 ASN n 1 146 CYS n 1 147 THR n 1 148 PHE n 1 149 GLU n 1 150 TYR n 1 151 ILE n 1 152 SER n 1 153 ASP n 1 154 ALA n 1 155 PHE n 1 156 SER n 1 157 LEU n 1 158 ASP n 1 159 VAL n 1 160 SER n 1 161 GLU n 1 162 LYS n 1 163 SER n 1 164 GLY n 1 165 ASN n 1 166 PHE n 1 167 LYS n 1 168 HIS n 1 169 LEU n 1 170 ARG n 1 171 GLU n 1 172 PHE n 1 173 VAL n 1 174 PHE n 1 175 LYS n 1 176 ASN n 1 177 LYS n 1 178 ASP n 1 179 GLY n 1 180 PHE n 1 181 LEU n 1 182 TYR n 1 183 VAL n 1 184 TYR n 1 185 LYS n 1 186 GLY n 1 187 TYR n 1 188 GLN n 1 189 PRO n 1 190 ILE n 1 191 ASP n 1 192 VAL n 1 193 VAL n 1 194 ARG n 1 195 ASP n 1 196 LEU n 1 197 PRO n 1 198 SER n 1 199 GLY n 1 200 PHE n 1 201 ASN n 1 202 THR n 1 203 LEU n 1 204 LYS n 1 205 PRO n 1 206 ILE n 1 207 PHE n 1 208 LYS n 1 209 LEU n 1 210 PRO n 1 211 LEU n 1 212 GLY n 1 213 ILE n 1 214 ASN n 1 215 ILE n 1 216 THR n 1 217 ASN n 1 218 PHE n 1 219 ARG n 1 220 ALA n 1 221 ILE n 1 222 LEU n 1 223 THR n 1 224 ALA n 1 225 PHE n 1 226 SER n 1 227 PRO n 1 228 ALA n 1 229 GLN n 1 230 ASP n 1 231 THR n 1 232 TRP n 1 233 GLY n 1 234 THR n 1 235 SER n 1 236 ALA n 1 237 ALA n 1 238 ALA n 1 239 TYR n 1 240 PHE n 1 241 VAL n 1 242 GLY n 1 243 TYR n 1 244 LEU n 1 245 LYS n 1 246 PRO n 1 247 THR n 1 248 THR n 1 249 PHE n 1 250 MET n 1 251 LEU n 1 252 LYS n 1 253 TYR n 1 254 ASP n 1 255 GLU n 1 256 ASN n 1 257 GLY n 1 258 THR n 1 259 ILE n 1 260 THR n 1 261 ASP n 1 262 ALA n 1 263 VAL n 1 264 ASP n 1 265 CYS n 1 266 SER n 1 267 GLN n 1 268 ASN n 1 269 PRO n 1 270 LEU n 1 271 ALA n 1 272 GLU n 1 273 LEU n 1 274 LYS n 1 275 CYS n 1 276 SER n 1 277 VAL n 1 278 LYS n 1 279 SER n 1 280 HIS n 1 281 HIS n 1 282 HIS n 1 283 HIS n 1 284 HIS n 1 285 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 285 _entity_src_gen.gene_src_common_name SARS-CoV _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'S, 2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain BJ01 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human SARS coronavirus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 227859 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'cabbage looper' _entity_src_gen.pdbx_host_org_scientific_name 'Trichoplusia ni' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7111 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SPIKE_CVHSA _struct_ref.pdbx_db_accession P59594 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATE KSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVS EKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYF VGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKS ; _struct_ref.pdbx_align_begin 14 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5X4S _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 279 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P59594 _struct_ref_seq.db_align_beg 14 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 292 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 14 _struct_ref_seq.pdbx_auth_seq_align_end 292 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5X4S ASP A 64 ? UNP P59594 GLY 77 'See Sequence details' 77 1 1 5X4S THR A 231 ? UNP P59594 ILE 244 'See Sequence details' 244 2 1 5X4S HIS A 280 ? UNP P59594 ? ? 'expression tag' 293 3 1 5X4S HIS A 281 ? UNP P59594 ? ? 'expression tag' 294 4 1 5X4S HIS A 282 ? UNP P59594 ? ? 'expression tag' 295 5 1 5X4S HIS A 283 ? UNP P59594 ? ? 'expression tag' 296 6 1 5X4S HIS A 284 ? UNP P59594 ? ? 'expression tag' 297 7 1 5X4S HIS A 285 ? UNP P59594 ? ? 'expression tag' 298 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5X4S _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.82 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 56.41 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '1.3 M Na/K hydrogen phosphate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-06-21 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.039 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL17U' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.039 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL17U _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5X4S _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.2 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 20329 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 11.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 14.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.28 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 5.9 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1980 _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 14.2 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5X4S _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.200 _refine.ls_d_res_low 38.312 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 20247 _refine.ls_number_reflns_R_free 1040 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.46 _refine.ls_percent_reflns_R_free 5.14 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2535 _refine.ls_R_factor_R_free 0.2824 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2519 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 28.94 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.29 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2194 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 84 _refine_hist.number_atoms_total 2278 _refine_hist.d_res_high 2.200 _refine_hist.d_res_low 38.312 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.003 ? 2260 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.742 ? 3080 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 13.730 ? 807 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.053 ? 346 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 ? 393 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.2002 2.3162 . . 173 2640 100.00 . . . 0.3418 . 0.2940 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3162 2.4613 . . 125 2707 100.00 . . . 0.3530 . 0.2898 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4613 2.6512 . . 145 2704 100.00 . . . 0.3783 . 0.3018 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6512 2.9180 . . 154 2705 100.00 . . . 0.3483 . 0.2894 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9180 3.3400 . . 153 2747 100.00 . . . 0.3092 . 0.2631 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.3400 4.2072 . . 142 2779 100.00 . . . 0.2460 . 0.2199 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.2072 38.3175 . . 148 2925 97.00 . . . 0.2395 . 0.2401 . . . . . . . . . . # _struct.entry_id 5X4S _struct.title 'Structure of the N-terminal domain (NTD)of SARS-CoV spike protein' _struct.pdbx_descriptor 'Spike glycoprotein' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5X4S _struct_keywords.text 'SARS-CoV, spike, N-terminal domain, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 6 SG ? ? ? 1_555 A CYS 120 SG ? ? A CYS 19 A CYS 133 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf2 disulf ? ? A CYS 115 SG ? ? ? 1_555 A CYS 146 SG ? ? A CYS 128 A CYS 159 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf3 disulf ? ? A CYS 265 SG ? ? ? 1_555 A CYS 275 SG ? ? A CYS 278 A CYS 288 1_555 ? ? ? ? ? ? ? 2.027 ? ? covale1 covale one ? A ASN 96 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 109 A NAG 601 1_555 ? ? ? ? ? ? ? 1.452 ? N-Glycosylation covale2 covale one ? A ASN 106 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 119 B NAG 1 1_555 ? ? ? ? ? ? ? 1.439 ? N-Glycosylation covale3 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.443 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 274 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 287 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 CYS _struct_mon_prot_cis.pdbx_label_seq_id_2 275 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 CYS _struct_mon_prot_cis.pdbx_auth_seq_id_2 288 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 8.63 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 7 ? AA3 ? 3 ? AA4 ? 6 ? AA5 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA4 4 5 ? anti-parallel AA4 5 6 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? parallel AA5 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 18 ? THR A 21 ? THR A 31 THR A 34 AA1 2 ASN A 52 ? ILE A 59 ? ASN A 65 ILE A 72 AA1 3 THR A 62 ? PHE A 63 ? THR A 75 PHE A 76 AA2 1 THR A 18 ? THR A 21 ? THR A 31 THR A 34 AA2 2 ASN A 52 ? ILE A 59 ? ASN A 65 ILE A 72 AA2 3 ALA A 237 ? TYR A 243 ? ALA A 250 TYR A 256 AA2 4 ILE A 74 ? GLU A 80 ? ILE A 87 GLU A 93 AA2 5 PHE A 166 ? LYS A 177 ? PHE A 179 LYS A 190 AA2 6 PHE A 180 ? VAL A 192 ? PHE A 193 VAL A 205 AA2 7 LYS A 204 ? LEU A 209 ? LYS A 217 LEU A 222 AA3 1 THR A 38 ? PHE A 46 ? THR A 51 PHE A 59 AA3 2 LYS A 245 ? TYR A 253 ? LYS A 258 TYR A 266 AA3 3 ILE A 259 ? ASP A 264 ? ILE A 272 ASP A 277 AA4 1 ILE A 68 ? PRO A 69 ? ILE A 81 PRO A 82 AA4 2 ASN A 217 ? SER A 226 ? ASN A 230 SER A 239 AA4 3 GLY A 87 ? GLY A 91 ? GLY A 100 GLY A 104 AA4 4 SER A 100 ? ASN A 105 ? SER A 113 ASN A 118 AA4 5 VAL A 110 ? SER A 128 ? VAL A 123 SER A 141 AA4 6 GLN A 134 ? ILE A 151 ? GLN A 147 ILE A 164 AA5 1 ILE A 68 ? PRO A 69 ? ILE A 81 PRO A 82 AA5 2 ASN A 217 ? SER A 226 ? ASN A 230 SER A 239 AA5 3 VAL A 110 ? SER A 128 ? VAL A 123 SER A 141 AA5 4 GLN A 134 ? ILE A 151 ? GLN A 147 ILE A 164 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N THR A 18 ? N THR A 31 O GLY A 55 ? O GLY A 68 AA1 2 3 N ILE A 59 ? N ILE A 72 O THR A 62 ? O THR A 75 AA2 1 2 N THR A 18 ? N THR A 31 O GLY A 55 ? O GLY A 68 AA2 2 3 N PHE A 56 ? N PHE A 69 O TYR A 239 ? O TYR A 252 AA2 3 4 O ALA A 238 ? O ALA A 251 N THR A 79 ? N THR A 92 AA2 4 5 N GLU A 80 ? N GLU A 93 O HIS A 168 ? O HIS A 181 AA2 5 6 N PHE A 166 ? N PHE A 179 O VAL A 192 ? O VAL A 205 AA2 6 7 N LYS A 185 ? N LYS A 198 O LYS A 204 ? O LYS A 217 AA3 1 2 N ASP A 44 ? N ASP A 57 O THR A 247 ? O THR A 260 AA3 2 3 N LYS A 252 ? N LYS A 265 O ASP A 261 ? O ASP A 274 AA4 1 2 N ILE A 68 ? N ILE A 81 O PHE A 218 ? O PHE A 231 AA4 2 3 O ASN A 217 ? O ASN A 230 N GLY A 91 ? N GLY A 104 AA4 3 4 N PHE A 90 ? N PHE A 103 O VAL A 101 ? O VAL A 114 AA4 4 5 N SER A 100 ? N SER A 113 O CYS A 115 ? O CYS A 128 AA4 5 6 N ALA A 114 ? N ALA A 127 O THR A 147 ? O THR A 160 AA5 1 2 N ILE A 68 ? N ILE A 81 O PHE A 218 ? O PHE A 231 AA5 2 3 O ALA A 224 ? O ALA A 237 N PHE A 125 ? N PHE A 138 AA5 3 4 N ALA A 114 ? N ALA A 127 O THR A 147 ? O THR A 160 # _atom_sites.entry_id 5X4S _atom_sites.fract_transf_matrix[1][1] 0.013644 _atom_sites.fract_transf_matrix[1][2] 0.007878 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015755 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004162 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 14 ? ? ? A . n A 1 2 ASP 2 15 ? ? ? A . n A 1 3 LEU 3 16 ? ? ? A . n A 1 4 ASP 4 17 ? ? ? A . n A 1 5 ARG 5 18 18 ARG ARG A . n A 1 6 CYS 6 19 19 CYS CYS A . n A 1 7 THR 7 20 20 THR THR A . n A 1 8 THR 8 21 21 THR THR A . n A 1 9 PHE 9 22 22 PHE PHE A . n A 1 10 ASP 10 23 23 ASP ASP A . n A 1 11 ASP 11 24 24 ASP ASP A . n A 1 12 VAL 12 25 25 VAL VAL A . n A 1 13 GLN 13 26 26 GLN GLN A . n A 1 14 ALA 14 27 27 ALA ALA A . n A 1 15 PRO 15 28 28 PRO PRO A . n A 1 16 ASN 16 29 29 ASN ASN A . n A 1 17 TYR 17 30 30 TYR TYR A . n A 1 18 THR 18 31 31 THR THR A . n A 1 19 GLN 19 32 32 GLN GLN A . n A 1 20 HIS 20 33 33 HIS HIS A . n A 1 21 THR 21 34 34 THR THR A . n A 1 22 SER 22 35 35 SER SER A . n A 1 23 SER 23 36 36 SER SER A . n A 1 24 MET 24 37 37 MET MET A . n A 1 25 ARG 25 38 38 ARG ARG A . n A 1 26 GLY 26 39 39 GLY GLY A . n A 1 27 VAL 27 40 40 VAL VAL A . n A 1 28 TYR 28 41 41 TYR TYR A . n A 1 29 TYR 29 42 42 TYR TYR A . n A 1 30 PRO 30 43 43 PRO PRO A . n A 1 31 ASP 31 44 44 ASP ASP A . n A 1 32 GLU 32 45 45 GLU GLU A . n A 1 33 ILE 33 46 46 ILE ILE A . n A 1 34 PHE 34 47 47 PHE PHE A . n A 1 35 ARG 35 48 48 ARG ARG A . n A 1 36 SER 36 49 49 SER SER A . n A 1 37 ASP 37 50 50 ASP ASP A . n A 1 38 THR 38 51 51 THR THR A . n A 1 39 LEU 39 52 52 LEU LEU A . n A 1 40 TYR 40 53 53 TYR TYR A . n A 1 41 LEU 41 54 54 LEU LEU A . n A 1 42 THR 42 55 55 THR THR A . n A 1 43 GLN 43 56 56 GLN GLN A . n A 1 44 ASP 44 57 57 ASP ASP A . n A 1 45 LEU 45 58 58 LEU LEU A . n A 1 46 PHE 46 59 59 PHE PHE A . n A 1 47 LEU 47 60 60 LEU LEU A . n A 1 48 PRO 48 61 61 PRO PRO A . n A 1 49 PHE 49 62 62 PHE PHE A . n A 1 50 TYR 50 63 63 TYR TYR A . n A 1 51 SER 51 64 64 SER SER A . n A 1 52 ASN 52 65 65 ASN ASN A . n A 1 53 VAL 53 66 66 VAL VAL A . n A 1 54 THR 54 67 67 THR THR A . n A 1 55 GLY 55 68 68 GLY GLY A . n A 1 56 PHE 56 69 69 PHE PHE A . n A 1 57 HIS 57 70 70 HIS HIS A . n A 1 58 THR 58 71 71 THR THR A . n A 1 59 ILE 59 72 72 ILE ILE A . n A 1 60 ASN 60 73 73 ASN ASN A . n A 1 61 HIS 61 74 74 HIS HIS A . n A 1 62 THR 62 75 75 THR THR A . n A 1 63 PHE 63 76 76 PHE PHE A . n A 1 64 ASP 64 77 77 ASP ASP A . n A 1 65 ASN 65 78 78 ASN ASN A . n A 1 66 PRO 66 79 79 PRO PRO A . n A 1 67 VAL 67 80 80 VAL VAL A . n A 1 68 ILE 68 81 81 ILE ILE A . n A 1 69 PRO 69 82 82 PRO PRO A . n A 1 70 PHE 70 83 83 PHE PHE A . n A 1 71 LYS 71 84 84 LYS LYS A . n A 1 72 ASP 72 85 85 ASP ASP A . n A 1 73 GLY 73 86 86 GLY GLY A . n A 1 74 ILE 74 87 87 ILE ILE A . n A 1 75 TYR 75 88 88 TYR TYR A . n A 1 76 PHE 76 89 89 PHE PHE A . n A 1 77 ALA 77 90 90 ALA ALA A . n A 1 78 ALA 78 91 91 ALA ALA A . n A 1 79 THR 79 92 92 THR THR A . n A 1 80 GLU 80 93 93 GLU GLU A . n A 1 81 LYS 81 94 94 LYS LYS A . n A 1 82 SER 82 95 95 SER SER A . n A 1 83 ASN 83 96 96 ASN ASN A . n A 1 84 VAL 84 97 97 VAL VAL A . n A 1 85 VAL 85 98 98 VAL VAL A . n A 1 86 ARG 86 99 99 ARG ARG A . n A 1 87 GLY 87 100 100 GLY GLY A . n A 1 88 TRP 88 101 101 TRP TRP A . n A 1 89 VAL 89 102 102 VAL VAL A . n A 1 90 PHE 90 103 103 PHE PHE A . n A 1 91 GLY 91 104 104 GLY GLY A . n A 1 92 SER 92 105 105 SER SER A . n A 1 93 THR 93 106 106 THR THR A . n A 1 94 MET 94 107 107 MET MET A . n A 1 95 ASN 95 108 108 ASN ASN A . n A 1 96 ASN 96 109 109 ASN ASN A . n A 1 97 LYS 97 110 110 LYS LYS A . n A 1 98 SER 98 111 111 SER SER A . n A 1 99 GLN 99 112 112 GLN GLN A . n A 1 100 SER 100 113 113 SER SER A . n A 1 101 VAL 101 114 114 VAL VAL A . n A 1 102 ILE 102 115 115 ILE ILE A . n A 1 103 ILE 103 116 116 ILE ILE A . n A 1 104 ILE 104 117 117 ILE ILE A . n A 1 105 ASN 105 118 118 ASN ASN A . n A 1 106 ASN 106 119 119 ASN ASN A . n A 1 107 SER 107 120 120 SER SER A . n A 1 108 THR 108 121 121 THR THR A . n A 1 109 ASN 109 122 122 ASN ASN A . n A 1 110 VAL 110 123 123 VAL VAL A . n A 1 111 VAL 111 124 124 VAL VAL A . n A 1 112 ILE 112 125 125 ILE ILE A . n A 1 113 ARG 113 126 126 ARG ARG A . n A 1 114 ALA 114 127 127 ALA ALA A . n A 1 115 CYS 115 128 128 CYS CYS A . n A 1 116 ASN 116 129 129 ASN ASN A . n A 1 117 PHE 117 130 130 PHE PHE A . n A 1 118 GLU 118 131 131 GLU GLU A . n A 1 119 LEU 119 132 132 LEU LEU A . n A 1 120 CYS 120 133 133 CYS CYS A . n A 1 121 ASP 121 134 134 ASP ASP A . n A 1 122 ASN 122 135 135 ASN ASN A . n A 1 123 PRO 123 136 136 PRO PRO A . n A 1 124 PHE 124 137 137 PHE PHE A . n A 1 125 PHE 125 138 138 PHE PHE A . n A 1 126 ALA 126 139 139 ALA ALA A . n A 1 127 VAL 127 140 140 VAL VAL A . n A 1 128 SER 128 141 141 SER SER A . n A 1 129 LYS 129 142 142 LYS LYS A . n A 1 130 PRO 130 143 143 PRO PRO A . n A 1 131 MET 131 144 144 MET MET A . n A 1 132 GLY 132 145 145 GLY GLY A . n A 1 133 THR 133 146 146 THR THR A . n A 1 134 GLN 134 147 147 GLN GLN A . n A 1 135 THR 135 148 148 THR THR A . n A 1 136 HIS 136 149 149 HIS HIS A . n A 1 137 THR 137 150 150 THR THR A . n A 1 138 MET 138 151 151 MET MET A . n A 1 139 ILE 139 152 152 ILE ILE A . n A 1 140 PHE 140 153 153 PHE PHE A . n A 1 141 ASP 141 154 154 ASP ASP A . n A 1 142 ASN 142 155 155 ASN ASN A . n A 1 143 ALA 143 156 156 ALA ALA A . n A 1 144 PHE 144 157 157 PHE PHE A . n A 1 145 ASN 145 158 158 ASN ASN A . n A 1 146 CYS 146 159 159 CYS CYS A . n A 1 147 THR 147 160 160 THR THR A . n A 1 148 PHE 148 161 161 PHE PHE A . n A 1 149 GLU 149 162 162 GLU GLU A . n A 1 150 TYR 150 163 163 TYR TYR A . n A 1 151 ILE 151 164 164 ILE ILE A . n A 1 152 SER 152 165 165 SER SER A . n A 1 153 ASP 153 166 166 ASP ASP A . n A 1 154 ALA 154 167 167 ALA ALA A . n A 1 155 PHE 155 168 168 PHE PHE A . n A 1 156 SER 156 169 169 SER SER A . n A 1 157 LEU 157 170 170 LEU LEU A . n A 1 158 ASP 158 171 171 ASP ASP A . n A 1 159 VAL 159 172 172 VAL VAL A . n A 1 160 SER 160 173 173 SER SER A . n A 1 161 GLU 161 174 174 GLU GLU A . n A 1 162 LYS 162 175 175 LYS LYS A . n A 1 163 SER 163 176 176 SER SER A . n A 1 164 GLY 164 177 177 GLY GLY A . n A 1 165 ASN 165 178 178 ASN ASN A . n A 1 166 PHE 166 179 179 PHE PHE A . n A 1 167 LYS 167 180 180 LYS LYS A . n A 1 168 HIS 168 181 181 HIS HIS A . n A 1 169 LEU 169 182 182 LEU LEU A . n A 1 170 ARG 170 183 183 ARG ARG A . n A 1 171 GLU 171 184 184 GLU GLU A . n A 1 172 PHE 172 185 185 PHE PHE A . n A 1 173 VAL 173 186 186 VAL VAL A . n A 1 174 PHE 174 187 187 PHE PHE A . n A 1 175 LYS 175 188 188 LYS LYS A . n A 1 176 ASN 176 189 189 ASN ASN A . n A 1 177 LYS 177 190 190 LYS LYS A . n A 1 178 ASP 178 191 191 ASP ASP A . n A 1 179 GLY 179 192 192 GLY GLY A . n A 1 180 PHE 180 193 193 PHE PHE A . n A 1 181 LEU 181 194 194 LEU LEU A . n A 1 182 TYR 182 195 195 TYR TYR A . n A 1 183 VAL 183 196 196 VAL VAL A . n A 1 184 TYR 184 197 197 TYR TYR A . n A 1 185 LYS 185 198 198 LYS LYS A . n A 1 186 GLY 186 199 199 GLY GLY A . n A 1 187 TYR 187 200 200 TYR TYR A . n A 1 188 GLN 188 201 201 GLN GLN A . n A 1 189 PRO 189 202 202 PRO PRO A . n A 1 190 ILE 190 203 203 ILE ILE A . n A 1 191 ASP 191 204 204 ASP ASP A . n A 1 192 VAL 192 205 205 VAL VAL A . n A 1 193 VAL 193 206 206 VAL VAL A . n A 1 194 ARG 194 207 207 ARG ARG A . n A 1 195 ASP 195 208 208 ASP ASP A . n A 1 196 LEU 196 209 209 LEU LEU A . n A 1 197 PRO 197 210 210 PRO PRO A . n A 1 198 SER 198 211 211 SER SER A . n A 1 199 GLY 199 212 212 GLY GLY A . n A 1 200 PHE 200 213 213 PHE PHE A . n A 1 201 ASN 201 214 214 ASN ASN A . n A 1 202 THR 202 215 215 THR THR A . n A 1 203 LEU 203 216 216 LEU LEU A . n A 1 204 LYS 204 217 217 LYS LYS A . n A 1 205 PRO 205 218 218 PRO PRO A . n A 1 206 ILE 206 219 219 ILE ILE A . n A 1 207 PHE 207 220 220 PHE PHE A . n A 1 208 LYS 208 221 221 LYS LYS A . n A 1 209 LEU 209 222 222 LEU LEU A . n A 1 210 PRO 210 223 223 PRO PRO A . n A 1 211 LEU 211 224 224 LEU LEU A . n A 1 212 GLY 212 225 225 GLY GLY A . n A 1 213 ILE 213 226 226 ILE ILE A . n A 1 214 ASN 214 227 227 ASN ASN A . n A 1 215 ILE 215 228 228 ILE ILE A . n A 1 216 THR 216 229 229 THR THR A . n A 1 217 ASN 217 230 230 ASN ASN A . n A 1 218 PHE 218 231 231 PHE PHE A . n A 1 219 ARG 219 232 232 ARG ARG A . n A 1 220 ALA 220 233 233 ALA ALA A . n A 1 221 ILE 221 234 234 ILE ILE A . n A 1 222 LEU 222 235 235 LEU LEU A . n A 1 223 THR 223 236 236 THR THR A . n A 1 224 ALA 224 237 237 ALA ALA A . n A 1 225 PHE 225 238 238 PHE PHE A . n A 1 226 SER 226 239 239 SER SER A . n A 1 227 PRO 227 240 240 PRO PRO A . n A 1 228 ALA 228 241 ? ? ? A . n A 1 229 GLN 229 242 ? ? ? A . n A 1 230 ASP 230 243 ? ? ? A . n A 1 231 THR 231 244 244 THR THR A . n A 1 232 TRP 232 245 245 TRP TRP A . n A 1 233 GLY 233 246 246 GLY GLY A . n A 1 234 THR 234 247 247 THR THR A . n A 1 235 SER 235 248 248 SER SER A . n A 1 236 ALA 236 249 249 ALA ALA A . n A 1 237 ALA 237 250 250 ALA ALA A . n A 1 238 ALA 238 251 251 ALA ALA A . n A 1 239 TYR 239 252 252 TYR TYR A . n A 1 240 PHE 240 253 253 PHE PHE A . n A 1 241 VAL 241 254 254 VAL VAL A . n A 1 242 GLY 242 255 255 GLY GLY A . n A 1 243 TYR 243 256 256 TYR TYR A . n A 1 244 LEU 244 257 257 LEU LEU A . n A 1 245 LYS 245 258 258 LYS LYS A . n A 1 246 PRO 246 259 259 PRO PRO A . n A 1 247 THR 247 260 260 THR THR A . n A 1 248 THR 248 261 261 THR THR A . n A 1 249 PHE 249 262 262 PHE PHE A . n A 1 250 MET 250 263 263 MET MET A . n A 1 251 LEU 251 264 264 LEU LEU A . n A 1 252 LYS 252 265 265 LYS LYS A . n A 1 253 TYR 253 266 266 TYR TYR A . n A 1 254 ASP 254 267 267 ASP ASP A . n A 1 255 GLU 255 268 268 GLU GLU A . n A 1 256 ASN 256 269 269 ASN ASN A . n A 1 257 GLY 257 270 270 GLY GLY A . n A 1 258 THR 258 271 271 THR THR A . n A 1 259 ILE 259 272 272 ILE ILE A . n A 1 260 THR 260 273 273 THR THR A . n A 1 261 ASP 261 274 274 ASP ASP A . n A 1 262 ALA 262 275 275 ALA ALA A . n A 1 263 VAL 263 276 276 VAL VAL A . n A 1 264 ASP 264 277 277 ASP ASP A . n A 1 265 CYS 265 278 278 CYS CYS A . n A 1 266 SER 266 279 279 SER SER A . n A 1 267 GLN 267 280 280 GLN GLN A . n A 1 268 ASN 268 281 281 ASN ASN A . n A 1 269 PRO 269 282 282 PRO PRO A . n A 1 270 LEU 270 283 283 LEU LEU A . n A 1 271 ALA 271 284 284 ALA ALA A . n A 1 272 GLU 272 285 285 GLU GLU A . n A 1 273 LEU 273 286 286 LEU LEU A . n A 1 274 LYS 274 287 287 LYS LYS A . n A 1 275 CYS 275 288 288 CYS CYS A . n A 1 276 SER 276 289 289 SER SER A . n A 1 277 VAL 277 290 ? ? ? A . n A 1 278 LYS 278 291 ? ? ? A . n A 1 279 SER 279 292 ? ? ? A . n A 1 280 HIS 280 293 ? ? ? A . n A 1 281 HIS 281 294 ? ? ? A . n A 1 282 HIS 282 295 ? ? ? A . n A 1 283 HIS 283 296 ? ? ? A . n A 1 284 HIS 284 297 ? ? ? A . n A 1 285 HIS 285 298 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG 1 601 601 NAG NAG A . D 4 HOH 1 701 76 HOH HOH A . D 4 HOH 2 702 83 HOH HOH A . D 4 HOH 3 703 19 HOH HOH A . D 4 HOH 4 704 36 HOH HOH A . D 4 HOH 5 705 49 HOH HOH A . D 4 HOH 6 706 10 HOH HOH A . D 4 HOH 7 707 58 HOH HOH A . D 4 HOH 8 708 72 HOH HOH A . D 4 HOH 9 709 43 HOH HOH A . D 4 HOH 10 710 11 HOH HOH A . D 4 HOH 11 711 15 HOH HOH A . D 4 HOH 12 712 12 HOH HOH A . D 4 HOH 13 713 78 HOH HOH A . D 4 HOH 14 714 41 HOH HOH A . D 4 HOH 15 715 27 HOH HOH A . D 4 HOH 16 716 66 HOH HOH A . D 4 HOH 17 717 8 HOH HOH A . D 4 HOH 18 718 68 HOH HOH A . D 4 HOH 19 719 50 HOH HOH A . D 4 HOH 20 720 6 HOH HOH A . D 4 HOH 21 721 25 HOH HOH A . D 4 HOH 22 722 4 HOH HOH A . D 4 HOH 23 723 1 HOH HOH A . D 4 HOH 24 724 40 HOH HOH A . D 4 HOH 25 725 7 HOH HOH A . D 4 HOH 26 726 23 HOH HOH A . D 4 HOH 27 727 13 HOH HOH A . D 4 HOH 28 728 16 HOH HOH A . D 4 HOH 29 729 14 HOH HOH A . D 4 HOH 30 730 21 HOH HOH A . D 4 HOH 31 731 3 HOH HOH A . D 4 HOH 32 732 5 HOH HOH A . D 4 HOH 33 733 18 HOH HOH A . D 4 HOH 34 734 22 HOH HOH A . D 4 HOH 35 735 30 HOH HOH A . D 4 HOH 36 736 77 HOH HOH A . D 4 HOH 37 737 44 HOH HOH A . D 4 HOH 38 738 55 HOH HOH A . D 4 HOH 39 739 45 HOH HOH A . D 4 HOH 40 740 32 HOH HOH A . D 4 HOH 41 741 17 HOH HOH A . D 4 HOH 42 742 31 HOH HOH A . D 4 HOH 43 743 60 HOH HOH A . D 4 HOH 44 744 42 HOH HOH A . D 4 HOH 45 745 46 HOH HOH A . D 4 HOH 46 746 71 HOH HOH A . D 4 HOH 47 747 33 HOH HOH A . D 4 HOH 48 748 29 HOH HOH A . D 4 HOH 49 749 26 HOH HOH A . D 4 HOH 50 750 56 HOH HOH A . D 4 HOH 51 751 2 HOH HOH A . D 4 HOH 52 752 54 HOH HOH A . D 4 HOH 53 753 9 HOH HOH A . D 4 HOH 54 754 35 HOH HOH A . D 4 HOH 55 755 64 HOH HOH A . D 4 HOH 56 756 48 HOH HOH A . D 4 HOH 57 757 59 HOH HOH A . D 4 HOH 58 758 24 HOH HOH A . D 4 HOH 59 759 37 HOH HOH A . D 4 HOH 60 760 39 HOH HOH A . D 4 HOH 61 761 20 HOH HOH A . D 4 HOH 62 762 53 HOH HOH A . D 4 HOH 63 763 84 HOH HOH A . D 4 HOH 64 764 82 HOH HOH A . D 4 HOH 65 765 80 HOH HOH A . D 4 HOH 66 766 69 HOH HOH A . D 4 HOH 67 767 62 HOH HOH A . D 4 HOH 68 768 67 HOH HOH A . D 4 HOH 69 769 47 HOH HOH A . D 4 HOH 70 770 75 HOH HOH A . D 4 HOH 71 771 73 HOH HOH A . D 4 HOH 72 772 34 HOH HOH A . D 4 HOH 73 773 63 HOH HOH A . D 4 HOH 74 774 51 HOH HOH A . D 4 HOH 75 775 70 HOH HOH A . D 4 HOH 76 776 52 HOH HOH A . D 4 HOH 77 777 81 HOH HOH A . D 4 HOH 78 778 65 HOH HOH A . D 4 HOH 79 779 61 HOH HOH A . D 4 HOH 80 780 28 HOH HOH A . D 4 HOH 81 781 74 HOH HOH A . D 4 HOH 82 782 57 HOH HOH A . D 4 HOH 83 783 79 HOH HOH A . D 4 HOH 84 784 38 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 790 ? 1 MORE 11 ? 1 'SSA (A^2)' 12980 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 783 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-05-03 2 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Data collection' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' chem_comp 3 2 'Structure model' entity 4 2 'Structure model' pdbx_branch_scheme 5 2 'Structure model' pdbx_chem_comp_identifier 6 2 'Structure model' pdbx_entity_branch 7 2 'Structure model' pdbx_entity_branch_descriptor 8 2 'Structure model' pdbx_entity_branch_link 9 2 'Structure model' pdbx_entity_branch_list 10 2 'Structure model' pdbx_entity_nonpoly 11 2 'Structure model' pdbx_nonpoly_scheme 12 2 'Structure model' pdbx_struct_assembly_gen 13 2 'Structure model' pdbx_struct_special_symmetry 14 2 'Structure model' struct_asym 15 2 'Structure model' struct_conn 16 2 'Structure model' struct_site 17 2 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.B_iso_or_equiv' 2 2 'Structure model' '_atom_site.Cartn_x' 3 2 'Structure model' '_atom_site.Cartn_y' 4 2 'Structure model' '_atom_site.Cartn_z' 5 2 'Structure model' '_atom_site.auth_asym_id' 6 2 'Structure model' '_atom_site.auth_seq_id' 7 2 'Structure model' '_atom_site.label_asym_id' 8 2 'Structure model' '_atom_site.label_entity_id' 9 2 'Structure model' '_chem_comp.name' 10 2 'Structure model' '_chem_comp.type' 11 2 'Structure model' '_pdbx_entity_nonpoly.entity_id' 12 2 'Structure model' '_pdbx_entity_nonpoly.name' 13 2 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 14 2 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id' 15 2 'Structure model' '_struct_conn.pdbx_role' 16 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 17 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 18 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 19 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 20 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 21 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 15.5135 -31.6583 -1.2876 0.2832 0.4453 0.3884 -0.0562 0.0293 -0.0242 1.0576 1.2272 1.8192 -0.1680 0.0237 0.4371 0.0336 0.4020 0.0461 -0.2863 0.1707 0.0555 0.0356 0.0694 -0.0072 'X-RAY DIFFRACTION' 2 ? refined 12.3081 -24.8708 -0.8010 0.3308 0.3578 0.3232 0.0016 0.0689 0.0009 1.7453 0.9564 1.6108 -0.7345 0.4162 -0.2949 0.0199 0.3785 0.1561 -0.2017 -0.0547 0.0648 -0.0783 0.0835 -0.0075 'X-RAY DIFFRACTION' 3 ? refined 5.4148 -10.9563 2.6851 0.5312 0.4430 0.6503 0.0649 0.1044 0.0287 5.1993 0.2573 1.9091 -0.1392 -0.3902 0.2467 -0.0069 0.1737 0.7364 -0.3728 0.2745 0.1029 -0.2034 -0.5266 -0.1081 'X-RAY DIFFRACTION' 4 ? refined 17.0843 -26.7925 4.2729 0.4021 0.3232 0.4112 -0.0155 0.0236 -0.0143 1.3432 0.8139 2.0285 -0.2986 -0.4456 -0.1048 0.0618 0.0485 0.2870 -0.1924 -0.0083 -0.1718 -0.1094 0.1110 0.0012 'X-RAY DIFFRACTION' 5 ? refined 17.5628 -23.0875 -7.8378 0.4451 0.4394 0.3131 0.0218 0.0666 0.0094 2.9350 5.8119 2.4698 3.5729 -1.1756 -1.6682 0.4514 0.1815 0.3793 0.2083 -0.3665 0.1413 -0.1761 -0.0427 -0.0825 'X-RAY DIFFRACTION' 6 ? refined 18.9734 -51.1418 6.5753 0.8359 0.3445 0.4842 -0.0270 0.0068 -0.0707 1.2765 1.2620 2.1478 -0.3434 -0.0111 0.4969 0.1426 -0.1743 -0.0991 -0.4362 -0.0626 -0.2663 1.1440 0.1518 -0.1138 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 18 through 50 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 51 through 146 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 147 through 160 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 161 through 239 ) ; 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 240 through 257 ) ; 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 258 through 289 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.10.1_2155: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_entry_details.compound_details ? _pdbx_entry_details.entry_id 5X4S _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'be based on strain, BJ01' _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N A SER 289 ? ? O A HOH 701 ? ? 1.91 2 1 O A HOH 779 ? ? O A HOH 782 ? ? 1.91 3 1 ND2 A ASN 73 ? ? O A HOH 702 ? ? 1.95 4 1 C A LEU 286 ? ? O A HOH 701 ? ? 2.08 5 1 O A GLU 45 ? ? O A HOH 703 ? ? 2.08 6 1 OD2 A ASP 57 ? ? O A HOH 704 ? ? 2.10 7 1 CA A LEU 286 ? ? O A HOH 701 ? ? 2.12 8 1 N A THR 244 ? ? O A HOH 705 ? ? 2.13 9 1 O A HOH 753 ? ? O A HOH 771 ? ? 2.17 10 1 O A HOH 716 ? ? O A HOH 738 ? ? 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 36 ? ? 49.59 -117.71 2 1 ILE A 72 ? ? -171.68 146.80 3 1 ASN A 73 ? ? 55.26 -122.07 4 1 PHE A 76 ? ? -151.88 71.37 5 1 LYS A 84 ? ? 61.61 -133.64 6 1 SER A 105 ? ? -132.47 -78.59 7 1 SER A 120 ? ? 83.75 -7.61 8 1 ASP A 208 ? ? 68.39 173.38 9 1 GLU A 285 ? ? -80.38 31.67 10 1 LEU A 286 ? ? -80.19 43.39 11 1 LYS A 287 ? ? 80.58 1.51 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 784 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.20 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 14 ? A SER 1 2 1 Y 1 A ASP 15 ? A ASP 2 3 1 Y 1 A LEU 16 ? A LEU 3 4 1 Y 1 A ASP 17 ? A ASP 4 5 1 Y 1 A ALA 241 ? A ALA 228 6 1 Y 1 A GLN 242 ? A GLN 229 7 1 Y 1 A ASP 243 ? A ASP 230 8 1 Y 1 A VAL 290 ? A VAL 277 9 1 Y 1 A LYS 291 ? A LYS 278 10 1 Y 1 A SER 292 ? A SER 279 11 1 Y 1 A HIS 293 ? A HIS 280 12 1 Y 1 A HIS 294 ? A HIS 281 13 1 Y 1 A HIS 295 ? A HIS 282 14 1 Y 1 A HIS 296 ? A HIS 283 15 1 Y 1 A HIS 297 ? A HIS 284 16 1 Y 1 A HIS 298 ? A HIS 285 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 A NAG 602 n B 2 NAG 2 B NAG 2 A NAG 603 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 4 water HOH #