HEADER TRANSFERASE 16-FEB-17 5X5H TITLE CRYSTAL STRUCTURE OF METB FROM CORYNEBACTERIUM GLUTAMICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTATHIONINE BETA-LYASES/CYSTATHIONINE GAMMA-SYNTHASES; COMPND 3 CHAIN: A; COMPND 4 EC: 2.5.1.48; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM (STRAIN ATCC 13032 / SOURCE 3 DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025); SOURCE 4 ORGANISM_TAXID: 196627; SOURCE 5 STRAIN: ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025; SOURCE 6 GENE: CGL2446; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS PLP-BINDING DOMAIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.-Y.SAGONG,K.-J.KIM REVDAT 4 22-NOV-23 5X5H 1 REMARK REVDAT 3 16-SEP-20 5X5H 1 TITLE REVDAT 2 16-AUG-17 5X5H 1 JRNL REVDAT 1 01-MAR-17 5X5H 0 JRNL AUTH H.-Y.SAGONG,K.-J.KIM JRNL TITL STRUCTURAL INSIGHTS INTO SUBSTRATE SPECIFICITY OF JRNL TITL 2 CYSTATHIONINE GAMMA-SYNTHASE FROM CORYNEBACTERIUM GLUTAMICUM JRNL REF J. AGRIC. FOOD CHEM. V. 65 6002 2017 JRNL REFN ESSN 1520-5118 JRNL PMID 28675039 JRNL DOI 10.1021/ACS.JAFC.7B02391 REMARK 2 REMARK 2 RESOLUTION. 1.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 52555 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2742 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.51 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.55 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3659 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.1580 REMARK 3 BIN FREE R VALUE SET COUNT : 171 REMARK 3 BIN FREE R VALUE : 0.1940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2922 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 254 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.37000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : -0.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.065 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.037 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.978 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3010 ; 0.027 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2782 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4087 ; 2.465 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6457 ; 1.191 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 384 ; 6.241 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;34.340 ;24.882 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 484 ;11.907 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;20.267 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 473 ; 0.156 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3355 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 574 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5X5H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1300002959. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55876 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.510 REMARK 200 RESOLUTION RANGE LOW (A) : 80.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 42.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.32100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 16.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3QHX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, MAGNESIUM FORMATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.92550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 80.92900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.92550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 80.92900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.92550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 80.92900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.92550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 80.92900 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 29.28700 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 80.92900 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 29.28700 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 80.92900 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 29.28700 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 80.92900 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 29.28700 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 80.92900 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 29.28700 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 74.92550 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 29.28700 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 74.92550 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 29.28700 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 74.92550 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 29.28700 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 74.92550 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 26700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -169.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 74.92550 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 80.92900 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 29.28700 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 80.92900 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 29.28700 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 74.92550 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 HIS A 390 REMARK 465 HIS A 391 REMARK 465 HIS A 392 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 387 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 112 O HOH A 501 1.96 REMARK 500 OE1 GLU A 227 O1 GOL A 404 2.14 REMARK 500 O HOH A 715 O HOH A 723 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 107 CB TYR A 107 CG -0.097 REMARK 500 GLU A 150 CB GLU A 150 CG -0.135 REMARK 500 GLU A 373 CD GLU A 373 OE1 0.087 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 90 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 TYR A 107 CZ - CE2 - CD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 161 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 LYS A 204 CD - CE - NZ ANGL. DEV. = 15.3 DEGREES REMARK 500 ASP A 263 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 309 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 LEU A 340 CB - CG - CD2 ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG A 360 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 360 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 ASP A 361 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 24 -84.25 -108.16 REMARK 500 LYS A 48 48.72 -154.61 REMARK 500 GLU A 51 -47.78 -134.56 REMARK 500 SER A 184 165.42 70.69 REMARK 500 LYS A 204 -116.68 -91.69 REMARK 500 SER A 332 179.25 82.54 REMARK 500 MET A 346 -99.31 -126.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 406 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 38 O REMARK 620 2 GLN A 40 OE1 111.7 REMARK 620 3 GLU A 51 O 99.2 121.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 71 O REMARK 620 2 GLU A 71 OE1 94.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 406 DBREF 5X5H A 1 386 UNP Q79VD9 Q79VD9_CORGL 1 386 SEQADV 5X5H HIS A 387 UNP Q79VD9 EXPRESSION TAG SEQADV 5X5H HIS A 388 UNP Q79VD9 EXPRESSION TAG SEQADV 5X5H HIS A 389 UNP Q79VD9 EXPRESSION TAG SEQADV 5X5H HIS A 390 UNP Q79VD9 EXPRESSION TAG SEQADV 5X5H HIS A 391 UNP Q79VD9 EXPRESSION TAG SEQADV 5X5H HIS A 392 UNP Q79VD9 EXPRESSION TAG SEQRES 1 A 392 MET SER PHE ASP PRO ASN THR GLN GLY PHE SER THR ALA SEQRES 2 A 392 SER ILE HIS ALA GLY TYR GLU PRO ASP ASP TYR TYR GLY SEQRES 3 A 392 SER ILE ASN THR PRO ILE TYR ALA SER THR THR PHE ALA SEQRES 4 A 392 GLN ASN ALA PRO ASN GLU LEU ARG LYS GLY TYR GLU TYR SEQRES 5 A 392 THR ARG VAL GLY ASN PRO THR ILE VAL ALA LEU GLU GLN SEQRES 6 A 392 THR VAL ALA ALA LEU GLU GLY ALA LYS TYR GLY ARG ALA SEQRES 7 A 392 PHE SER SER GLY MET ALA ALA THR ASP ILE LEU PHE ARG SEQRES 8 A 392 ILE ILE LEU LYS PRO GLY ASP HIS ILE VAL LEU GLY ASN SEQRES 9 A 392 ASP ALA TYR GLY GLY THR TYR ARG LEU ILE ASP THR VAL SEQRES 10 A 392 PHE THR ALA TRP GLY VAL GLU TYR THR VAL VAL ASP THR SEQRES 11 A 392 SER VAL VAL GLU GLU VAL LYS ALA ALA ILE LYS ASP ASN SEQRES 12 A 392 THR LYS LEU ILE TRP VAL GLU THR PRO THR ASN PRO ALA SEQRES 13 A 392 LEU GLY ILE THR ASP ILE GLU ALA VAL ALA LYS LEU THR SEQRES 14 A 392 GLU GLY THR ASN ALA LYS LEU VAL VAL ASP ASN THR PHE SEQRES 15 A 392 ALA SER PRO TYR LEU GLN GLN PRO LEU LYS LEU GLY ALA SEQRES 16 A 392 HIS ALA VAL LEU HIS SER THR THR LYS TYR ILE GLY GLY SEQRES 17 A 392 HIS SER ASP VAL VAL GLY GLY LEU VAL VAL THR ASN ASP SEQRES 18 A 392 GLN GLU MET ASP GLU GLU LEU LEU PHE MET GLN GLY GLY SEQRES 19 A 392 ILE GLY PRO ILE PRO SER VAL PHE ASP ALA TYR LEU THR SEQRES 20 A 392 ALA ARG GLY LEU LYS THR LEU ALA VAL ARG MET ASP ARG SEQRES 21 A 392 HIS CYS ASP ASN ALA GLU LYS ILE ALA GLU PHE LEU ASP SEQRES 22 A 392 SER ARG PRO GLU VAL SER THR VAL LEU TYR PRO GLY LEU SEQRES 23 A 392 LYS ASN HIS PRO GLY HIS GLU VAL ALA ALA LYS GLN MET SEQRES 24 A 392 LYS ARG PHE GLY GLY MET ILE SER VAL ARG PHE ALA GLY SEQRES 25 A 392 GLY GLU GLU ALA ALA LYS LYS PHE CYS THR SER THR LYS SEQRES 26 A 392 LEU ILE CYS LEU ALA GLU SER LEU GLY GLY VAL GLU SER SEQRES 27 A 392 LEU LEU GLU HIS PRO ALA THR MET THR HIS GLN SER ALA SEQRES 28 A 392 ALA GLY SER GLN LEU GLU VAL PRO ARG ASP LEU VAL ARG SEQRES 29 A 392 ILE SER ILE GLY ILE GLU ASP ILE GLU ASP LEU LEU ALA SEQRES 30 A 392 ASP VAL GLU GLN ALA LEU ASN ASN LEU HIS HIS HIS HIS SEQRES 31 A 392 HIS HIS HET PLP A 401 15 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET MG A 405 1 HET MG A 406 1 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETSYN PLP VITAMIN B6 PHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 PLP C8 H10 N O6 P FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 MG 2(MG 2+) FORMUL 8 HOH *254(H2 O) HELIX 1 AA1 ASP A 4 GLN A 8 5 5 HELIX 2 AA2 GLY A 9 ALA A 17 1 9 HELIX 3 AA3 ASN A 57 GLU A 71 1 15 HELIX 4 AA4 SER A 81 LEU A 94 1 14 HELIX 5 AA5 TYR A 107 VAL A 117 1 11 HELIX 6 AA6 PHE A 118 GLY A 122 5 5 HELIX 7 AA7 VAL A 132 ILE A 140 1 9 HELIX 8 AA8 ASP A 161 LEU A 168 1 8 HELIX 9 AA9 ALA A 183 GLN A 188 1 6 HELIX 10 AB1 GLN A 189 GLY A 194 5 6 HELIX 11 AB2 ASP A 221 GLY A 236 1 16 HELIX 12 AB3 SER A 240 LYS A 252 1 13 HELIX 13 AB4 THR A 253 SER A 274 1 22 HELIX 14 AB5 GLY A 291 MET A 299 1 9 HELIX 15 AB6 GLY A 312 THR A 324 1 13 HELIX 16 AB7 HIS A 348 ALA A 352 5 5 HELIX 17 AB8 ASP A 371 ASN A 385 1 15 SHEET 1 AA1 2 GLN A 40 ALA A 42 0 SHEET 2 AA1 2 GLU A 45 LEU A 46 -1 O GLU A 45 N ALA A 42 SHEET 1 AA2 7 TYR A 75 PHE A 79 0 SHEET 2 AA2 7 GLY A 215 THR A 219 -1 O GLY A 215 N PHE A 79 SHEET 3 AA2 7 ALA A 197 SER A 201 -1 N HIS A 200 O LEU A 216 SHEET 4 AA2 7 LYS A 175 ASP A 179 1 N VAL A 178 O LEU A 199 SHEET 5 AA2 7 THR A 144 GLU A 150 1 N VAL A 149 O ASP A 179 SHEET 6 AA2 7 HIS A 99 GLY A 103 1 N VAL A 101 O TRP A 148 SHEET 7 AA2 7 GLU A 124 VAL A 128 1 O THR A 126 N LEU A 102 SHEET 1 AA3 5 VAL A 278 LEU A 282 0 SHEET 2 AA3 5 MET A 305 PHE A 310 -1 O SER A 307 N LEU A 282 SHEET 3 AA3 5 LEU A 362 SER A 366 -1 O ILE A 365 N ILE A 306 SHEET 4 AA3 5 LEU A 339 GLU A 341 -1 N LEU A 339 O SER A 366 SHEET 5 AA3 5 CYS A 328 LEU A 329 1 N CYS A 328 O LEU A 340 LINK NZ LYS A 204 C4A PLP A 401 1555 1555 1.38 LINK O PHE A 38 MG MG A 406 1555 1555 2.70 LINK OE1 GLN A 40 MG MG A 406 1555 1555 2.93 LINK O GLU A 51 MG MG A 406 1555 1555 2.75 LINK O GLU A 71 MG MG A 405 1555 1555 2.75 LINK OE1 GLU A 71 MG MG A 405 1555 1555 2.62 CISPEP 1 THR A 151 PRO A 152 0 -5.29 CISPEP 2 ASN A 154 PRO A 155 0 13.93 SITE 1 AC1 13 TYR A 52 ARG A 54 SER A 81 GLY A 82 SITE 2 AC1 13 MET A 83 TYR A 107 ASN A 154 ASP A 179 SITE 3 AC1 13 PHE A 182 SER A 201 THR A 203 LYS A 204 SITE 4 AC1 13 GLY A 214 SITE 1 AC2 7 ASP A 273 THR A 280 VAL A 281 LEU A 286 SITE 2 AC2 7 ASN A 288 HOH A 586 HOH A 712 SITE 1 AC3 9 ILE A 15 TYR A 19 ILE A 28 ASN A 29 SITE 2 AC3 9 LYS A 252 GLU A 337 HOH A 502 HOH A 508 SITE 3 AC3 9 HOH A 627 SITE 1 AC4 4 ARG A 91 LYS A 95 GLU A 227 HOH A 554 SITE 1 AC5 4 GLU A 71 GLN A 189 PRO A 190 LEU A 191 SITE 1 AC6 6 THR A 37 PHE A 38 GLN A 40 GLU A 51 SITE 2 AC6 6 ALA A 330 GLU A 331 CRYST1 58.574 149.851 161.858 90.00 90.00 90.00 F 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017072 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006673 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006178 0.00000