HEADER VIRAL PROTEIN 17-FEB-17 5X5V TITLE CRYSTAL STRUCTURE OF PSEUDORABIES VIRUS GLYCOPROTEIN D COMPND MOL_ID: 1; COMPND 2 MOLECULE: GD; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLYCOPROTEIN D; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUID HERPESVIRUS 1; SOURCE 3 ORGANISM_COMMON: PSEUDORABIES VIRUS; SOURCE 4 ORGANISM_TAXID: 10345; SOURCE 5 STRAIN: BECKER; SOURCE 6 GENE: US6; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: K-12 KEYWDS HERPES SIMPLEX VIRUS, PSEUDORABIES VIRUS, GLYCOPROTEIN D, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.LI,G.LU,J.QI,L.WU,K.TIAN,T.LUO,Y.SHI,J.YAN,G.F.GAO REVDAT 2 22-NOV-23 5X5V 1 REMARK REVDAT 1 26-APR-17 5X5V 0 JRNL AUTH A.LI,G.LU,J.QI,L.WU,K.TIAN,T.LUO,Y.SHI,J.YAN,G.F.GAO JRNL TITL CRYSTAL STRUCTURE OF PSEUDORABIES VIRUS GLYCOPROTEIN D JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 42206 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2130 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.5336 - 3.6949 0.90 2517 146 0.1647 0.1753 REMARK 3 2 3.6949 - 2.9345 0.99 2740 137 0.1636 0.1746 REMARK 3 3 2.9345 - 2.5641 0.99 2711 169 0.1786 0.2169 REMARK 3 4 2.5641 - 2.3299 0.99 2709 156 0.1686 0.2027 REMARK 3 5 2.3299 - 2.1630 0.99 2702 151 0.1712 0.1823 REMARK 3 6 2.1630 - 2.0355 0.99 2704 153 0.1615 0.1783 REMARK 3 7 2.0355 - 1.9337 0.98 2675 153 0.1666 0.2420 REMARK 3 8 1.9337 - 1.8495 0.98 2654 141 0.1743 0.2150 REMARK 3 9 1.8495 - 1.7783 0.98 2712 137 0.1737 0.1852 REMARK 3 10 1.7783 - 1.7170 0.98 2655 145 0.1681 0.1956 REMARK 3 11 1.7170 - 1.6633 0.97 2676 131 0.1692 0.2047 REMARK 3 12 1.6633 - 1.6158 0.97 2620 149 0.1705 0.1902 REMARK 3 13 1.6158 - 1.5733 0.97 2697 132 0.1800 0.1928 REMARK 3 14 1.5733 - 1.5349 0.97 2669 103 0.1791 0.1863 REMARK 3 15 1.5349 - 1.5000 0.96 2635 127 0.1959 0.2326 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2006 REMARK 3 ANGLE : 1.090 2743 REMARK 3 CHIRALITY : 0.042 281 REMARK 3 PLANARITY : 0.006 362 REMARK 3 DIHEDRAL : 12.406 738 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -4.1506 -67.6526 71.3213 REMARK 3 T TENSOR REMARK 3 T11: 0.1185 T22: 0.0981 REMARK 3 T33: 0.1104 T12: 0.0096 REMARK 3 T13: -0.0031 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.1440 L22: 0.5552 REMARK 3 L33: 0.8134 L12: -0.0101 REMARK 3 L13: 0.1049 L23: -0.0955 REMARK 3 S TENSOR REMARK 3 S11: 0.0476 S12: 0.1345 S13: 0.0031 REMARK 3 S21: -0.0318 S22: -0.0532 S23: 0.0552 REMARK 3 S31: 0.0120 S32: -0.0111 S33: 0.0008 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5X5V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1300002979. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42212 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2C36 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 19.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M AMMONIUM ACETATE 0.1 M BIS-TRIS REMARK 280 PH 5.5 17 % PEG 10,000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 39.69900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.48750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 39.69900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.48750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 13.50754 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 169.70003 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 519 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 711 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 LEU A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 LEU A 6 REMARK 465 LEU A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 LEU A 10 REMARK 465 VAL A 11 REMARK 465 ALA A 12 REMARK 465 ARG A 13 REMARK 465 THR A 14 REMARK 465 THR A 15 REMARK 465 LEU A 16 REMARK 465 GLY A 17 REMARK 465 ALA A 18 REMARK 465 ASP A 19 REMARK 465 VAL A 20 REMARK 465 ASP A 21 REMARK 465 ALA A 22 REMARK 465 VAL A 23 REMARK 465 PRO A 24 REMARK 465 ALA A 25 REMARK 465 PRO A 262 REMARK 465 SER A 263 REMARK 465 ALA A 264 REMARK 465 GLY A 265 REMARK 465 SER A 266 REMARK 465 PRO A 267 REMARK 465 ARG A 268 REMARK 465 PRO A 269 REMARK 465 ARG A 270 REMARK 465 PRO A 271 REMARK 465 ARG A 272 REMARK 465 PRO A 273 REMARK 465 ARG A 274 REMARK 465 PRO A 275 REMARK 465 ARG A 276 REMARK 465 PRO A 277 REMARK 465 ARG A 278 REMARK 465 PRO A 279 REMARK 465 LYS A 280 REMARK 465 PRO A 281 REMARK 465 GLU A 282 REMARK 465 PRO A 283 REMARK 465 ALA A 284 REMARK 465 PRO A 285 REMARK 465 ALA A 286 REMARK 465 THR A 287 REMARK 465 PRO A 288 REMARK 465 ALA A 289 REMARK 465 PRO A 290 REMARK 465 PRO A 291 REMARK 465 ASP A 292 REMARK 465 ARG A 293 REMARK 465 LEU A 294 REMARK 465 PRO A 295 REMARK 465 GLU A 296 REMARK 465 PRO A 297 REMARK 465 ALA A 298 REMARK 465 THR A 299 REMARK 465 ARG A 300 REMARK 465 ASP A 301 REMARK 465 HIS A 302 REMARK 465 ALA A 303 REMARK 465 ALA A 304 REMARK 465 GLY A 305 REMARK 465 GLY A 306 REMARK 465 ARG A 307 REMARK 465 PRO A 308 REMARK 465 THR A 309 REMARK 465 PRO A 310 REMARK 465 ARG A 311 REMARK 465 PRO A 312 REMARK 465 PRO A 313 REMARK 465 ARG A 314 REMARK 465 PRO A 315 REMARK 465 GLU A 316 REMARK 465 THR A 317 REMARK 465 PRO A 318 REMARK 465 HIS A 319 REMARK 465 ARG A 320 REMARK 465 PRO A 321 REMARK 465 PHE A 322 REMARK 465 ALA A 323 REMARK 465 PRO A 324 REMARK 465 PRO A 325 REMARK 465 ALA A 326 REMARK 465 VAL A 327 REMARK 465 VAL A 328 REMARK 465 PRO A 329 REMARK 465 SER A 330 REMARK 465 GLY A 331 REMARK 465 TRP A 332 REMARK 465 PRO A 333 REMARK 465 GLN A 334 REMARK 465 PRO A 335 REMARK 465 ALA A 336 REMARK 465 GLU A 337 REMARK 465 PRO A 338 REMARK 465 PHE A 339 REMARK 465 GLN A 340 REMARK 465 PRO A 341 REMARK 465 ARG A 342 REMARK 465 THR A 343 REMARK 465 PRO A 344 REMARK 465 ALA A 345 REMARK 465 ALA A 346 REMARK 465 PRO A 347 REMARK 465 GLY A 348 REMARK 465 VAL A 349 REMARK 465 SER A 350 REMARK 465 ARG A 351 REMARK 465 HIS A 352 REMARK 465 ARG A 353 REMARK 465 SER A 354 REMARK 465 VAL A 355 REMARK 465 ILE A 356 REMARK 465 VAL A 357 REMARK 465 GLY A 358 REMARK 465 THR A 359 REMARK 465 GLY A 360 REMARK 465 THR A 361 REMARK 465 ALA A 362 REMARK 465 MET A 363 REMARK 465 GLY A 364 REMARK 465 ALA A 365 REMARK 465 LEU A 366 REMARK 465 LEU A 367 REMARK 465 VAL A 368 REMARK 465 GLY A 369 REMARK 465 VAL A 370 REMARK 465 CYS A 371 REMARK 465 VAL A 372 REMARK 465 TYR A 373 REMARK 465 ILE A 374 REMARK 465 PHE A 375 REMARK 465 PHE A 376 REMARK 465 ARG A 377 REMARK 465 LEU A 378 REMARK 465 ARG A 379 REMARK 465 GLY A 380 REMARK 465 ALA A 381 REMARK 465 LYS A 382 REMARK 465 GLY A 383 REMARK 465 TYR A 384 REMARK 465 ARG A 385 REMARK 465 LEU A 386 REMARK 465 LEU A 387 REMARK 465 GLY A 388 REMARK 465 GLY A 389 REMARK 465 PRO A 390 REMARK 465 ALA A 391 REMARK 465 ASP A 392 REMARK 465 ALA A 393 REMARK 465 ASP A 394 REMARK 465 GLU A 395 REMARK 465 LEU A 396 REMARK 465 LYS A 397 REMARK 465 ALA A 398 REMARK 465 GLN A 399 REMARK 465 PRO A 400 REMARK 465 GLY A 401 REMARK 465 PRO A 402 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 818 O HOH A 830 1.86 REMARK 500 O HOH A 810 O HOH A 831 1.86 REMARK 500 O HOH A 825 O HOH A 832 1.88 REMARK 500 O HOH A 515 O HOH A 779 1.92 REMARK 500 O HOH A 658 O HOH A 748 1.99 REMARK 500 O HOH A 669 O HOH A 773 2.06 REMARK 500 SD MET A 133 O HOH A 717 2.07 REMARK 500 O HOH A 561 O HOH A 682 2.10 REMARK 500 O HOH A 811 O HOH A 828 2.15 REMARK 500 O ALA A 260 O HOH A 501 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 722 O HOH A 808 3455 2.13 REMARK 500 OE1 GLU A 37 OH TYR A 236 2658 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 41 -114.53 -121.50 REMARK 500 ALA A 102 -169.91 -112.96 REMARK 500 LEU A 109 -47.58 -143.53 REMARK 500 LYS A 201 -139.02 49.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 833 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH A 834 DISTANCE = 6.11 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5X5W RELATED DB: PDB DBREF 5X5V A 1 402 UNP G3G933 G3G933_9ALPH 1 402 SEQRES 1 A 402 MET LEU LEU ALA ALA LEU LEU ALA ALA LEU VAL ALA ARG SEQRES 2 A 402 THR THR LEU GLY ALA ASP VAL ASP ALA VAL PRO ALA PRO SEQRES 3 A 402 THR PHE PRO PRO PRO ALA TYR PRO TYR THR GLU SER TRP SEQRES 4 A 402 GLN LEU THR LEU THR THR VAL PRO SER PRO PHE VAL GLY SEQRES 5 A 402 PRO ALA ASP VAL TYR HIS THR ARG PRO LEU GLU ASP PRO SEQRES 6 A 402 CYS GLY VAL VAL ALA LEU ILE SER ASP PRO GLN VAL ASP SEQRES 7 A 402 ARG LEU LEU ASN GLU ALA VAL ALA HIS ARG ARG PRO THR SEQRES 8 A 402 TYR ARG ALA HIS VAL ALA TRP TYR ARG ILE ALA ASP GLY SEQRES 9 A 402 CYS ALA HIS LEU LEU TYR PHE ILE GLU TYR ALA ASP CYS SEQRES 10 A 402 ASP PRO ARG GLN VAL PHE GLY ARG CYS ARG ARG ARG THR SEQRES 11 A 402 THR PRO MET TRP TRP THR PRO SER ALA ASP TYR MET PHE SEQRES 12 A 402 PRO THR GLU ASP GLU LEU GLY LEU LEU MET VAL ALA PRO SEQRES 13 A 402 GLY ARG PHE ASN GLU GLY GLN TYR ARG ARG LEU VAL SER SEQRES 14 A 402 VAL ASP GLY VAL ASN ILE LEU THR ASP PHE MET VAL ALA SEQRES 15 A 402 LEU PRO GLU GLY GLN GLU CYS PRO PHE ALA ARG VAL ASP SEQRES 16 A 402 GLN HIS ARG THR TYR LYS PHE GLY ALA CYS TRP SER ASP SEQRES 17 A 402 ASP SER PHE LYS ARG GLY VAL ASP VAL MET ARG PHE LEU SEQRES 18 A 402 THR PRO PHE TYR GLN GLN PRO PRO HIS ARG GLU VAL VAL SEQRES 19 A 402 ASN TYR TRP TYR ARG LYS ASN GLY ARG THR LEU PRO ARG SEQRES 20 A 402 ALA TYR ALA ALA ALA THR PRO TYR ALA ILE ASP PRO ALA SEQRES 21 A 402 ARG PRO SER ALA GLY SER PRO ARG PRO ARG PRO ARG PRO SEQRES 22 A 402 ARG PRO ARG PRO ARG PRO LYS PRO GLU PRO ALA PRO ALA SEQRES 23 A 402 THR PRO ALA PRO PRO ASP ARG LEU PRO GLU PRO ALA THR SEQRES 24 A 402 ARG ASP HIS ALA ALA GLY GLY ARG PRO THR PRO ARG PRO SEQRES 25 A 402 PRO ARG PRO GLU THR PRO HIS ARG PRO PHE ALA PRO PRO SEQRES 26 A 402 ALA VAL VAL PRO SER GLY TRP PRO GLN PRO ALA GLU PRO SEQRES 27 A 402 PHE GLN PRO ARG THR PRO ALA ALA PRO GLY VAL SER ARG SEQRES 28 A 402 HIS ARG SER VAL ILE VAL GLY THR GLY THR ALA MET GLY SEQRES 29 A 402 ALA LEU LEU VAL GLY VAL CYS VAL TYR ILE PHE PHE ARG SEQRES 30 A 402 LEU ARG GLY ALA LYS GLY TYR ARG LEU LEU GLY GLY PRO SEQRES 31 A 402 ALA ASP ALA ASP GLU LEU LYS ALA GLN PRO GLY PRO FORMUL 2 HOH *334(H2 O) HELIX 1 AA1 VAL A 77 HIS A 87 1 11 HELIX 2 AA2 TRP A 135 ASP A 140 1 6 HELIX 3 AA3 GLY A 157 GLU A 161 5 5 HELIX 4 AA4 VAL A 194 LYS A 201 1 8 HELIX 5 AA5 SER A 207 GLY A 214 1 8 HELIX 6 AA6 ASP A 216 LEU A 221 1 6 HELIX 7 AA7 GLN A 226 ASN A 241 1 16 SHEET 1 AA1 4 THR A 36 SER A 38 0 SHEET 2 AA1 4 CYS A 126 THR A 130 1 O ARG A 127 N THR A 36 SHEET 3 AA1 4 CYS A 105 CYS A 117 -1 N ALA A 115 O ARG A 128 SHEET 4 AA1 4 CYS A 205 TRP A 206 -1 O TRP A 206 N ALA A 106 SHEET 1 AA2 7 ASP A 55 HIS A 58 0 SHEET 2 AA2 7 VAL A 173 VAL A 181 1 O MET A 180 N TYR A 57 SHEET 3 AA2 7 GLY A 162 VAL A 170 -1 N GLY A 162 O VAL A 181 SHEET 4 AA2 7 TYR A 92 ALA A 102 -1 N ILE A 101 O GLN A 163 SHEET 5 AA2 7 CYS A 105 CYS A 117 -1 O TYR A 114 N ALA A 94 SHEET 6 AA2 7 MET A 133 TRP A 134 -1 O MET A 133 N PHE A 111 SHEET 7 AA2 7 THR A 222 PRO A 223 -1 O THR A 222 N TRP A 134 SHEET 1 AA3 3 VAL A 68 LEU A 71 0 SHEET 2 AA3 3 LEU A 151 VAL A 154 -1 O MET A 153 N VAL A 69 SHEET 3 AA3 3 MET A 142 PRO A 144 -1 N PHE A 143 O LEU A 152 SSBOND 1 CYS A 66 CYS A 189 1555 1555 2.08 SSBOND 2 CYS A 105 CYS A 205 1555 1555 2.06 SSBOND 3 CYS A 117 CYS A 126 1555 1555 2.04 CRYST1 79.398 60.975 60.681 90.00 111.22 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012595 0.000000 0.004891 0.00000 SCALE2 0.000000 0.016400 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017678 0.00000