HEADER OXIDOREDUCTASE 21-FEB-17 5X68 TITLE CRYSTAL STRUCTURE OF HUMAN KMO COMPND MOL_ID: 1; COMPND 2 MOLECULE: KYNURENINE 3-MONOOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-374; COMPND 5 SYNONYM: KYNURENINE 3-HYDROXYLASE; COMPND 6 EC: 1.14.13.9; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KMO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K-12 KEYWDS MONOOXYGENASE, FLAVIN REDUCTION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.T.KIM,K.Y.HWANG REVDAT 3 02-MAY-18 5X68 1 JRNL REVDAT 2 28-FEB-18 5X68 1 JRNL REVDAT 1 21-FEB-18 5X68 0 JRNL AUTH H.T.KIM,B.K.NA,J.CHUNG,S.KIM,S.K.KWON,H.CHA,J.SON,J.M.CHO, JRNL AUTH 2 K.Y.HWANG JRNL TITL STRUCTURAL BASIS FOR INHIBITOR-INDUCED HYDROGEN PEROXIDE JRNL TITL 2 PRODUCTION BY KYNURENINE 3-MONOOXYGENASE JRNL REF CELL CHEM BIOL V. 25 426 2018 JRNL REFN ESSN 2451-9448 JRNL PMID 29429898 JRNL DOI 10.1016/J.CHEMBIOL.2018.01.008 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 88.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 55790 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2972 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3839 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.3760 REMARK 3 BIN FREE R VALUE SET COUNT : 189 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5622 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 131 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.193 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.180 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.179 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.433 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5927 ; 0.003 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5646 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8033 ; 0.666 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13030 ; 0.498 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 719 ; 6.863 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 260 ;37.133 ;23.885 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1012 ;18.440 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;21.292 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 875 ; 0.045 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6887 ; 0.001 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1354 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2846 ; 2.831 ; 5.285 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2845 ; 2.829 ; 5.284 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3554 ; 4.329 ; 7.913 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3555 ; 4.329 ; 7.914 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3081 ; 3.227 ; 5.661 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3078 ; 3.227 ; 5.664 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4473 ; 5.173 ; 8.326 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6557 ; 7.505 ;42.218 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6546 ; 7.492 ;42.210 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5X68 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1300003000. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55790 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 88.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 25.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.37900 REMARK 200 R SYM FOR SHELL (I) : 0.31500 REMARK 200 FOR SHELL : 2.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS (PH 8.5), 13% POLYETHYLENE REMARK 280 GLYCOL 4000, AND 15% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 88.36800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 51.01929 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.81133 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 88.36800 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 51.01929 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 29.81133 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 88.36800 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 51.01929 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 29.81133 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 102.03858 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 59.62267 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 102.03858 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 59.62267 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 102.03858 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 59.62267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 VAL A 5 REMARK 465 ILE A 6 REMARK 465 GLN A 7 REMARK 465 THR A 47 REMARK 465 PHE A 48 REMARK 465 THR A 49 REMARK 465 ARG A 50 REMARK 465 GLY A 51 REMARK 465 ARG A 52 REMARK 465 HIS A 354 REMARK 465 ALA A 355 REMARK 465 ILE A 356 REMARK 465 HIS A 370 REMARK 465 VAL A 371 REMARK 465 ASN A 372 REMARK 465 SER A 373 REMARK 465 SER A 374 REMARK 465 ALA A 375 REMARK 465 ALA A 376 REMARK 465 ALA A 377 REMARK 465 LEU A 378 REMARK 465 GLU A 379 REMARK 465 HIS A 380 REMARK 465 HIS A 381 REMARK 465 HIS A 382 REMARK 465 HIS A 383 REMARK 465 HIS A 384 REMARK 465 HIS A 385 REMARK 465 MET B -5 REMARK 465 ARG B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 VAL B 5 REMARK 465 ILE B 6 REMARK 465 GLN B 7 REMARK 465 THR B 47 REMARK 465 PHE B 48 REMARK 465 THR B 49 REMARK 465 ARG B 50 REMARK 465 HIS B 354 REMARK 465 ALA B 355 REMARK 465 ILE B 356 REMARK 465 ALA B 369 REMARK 465 HIS B 370 REMARK 465 VAL B 371 REMARK 465 ASN B 372 REMARK 465 SER B 373 REMARK 465 SER B 374 REMARK 465 ALA B 375 REMARK 465 ALA B 376 REMARK 465 ALA B 377 REMARK 465 LEU B 378 REMARK 465 GLU B 379 REMARK 465 HIS B 380 REMARK 465 HIS B 381 REMARK 465 HIS B 382 REMARK 465 HIS B 383 REMARK 465 HIS B 384 REMARK 465 HIS B 385 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MLY A 138 CH1 CH2 REMARK 470 MLY A 296 CH1 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 38 O HOH A 501 1.99 REMARK 500 NH2 ARG B 111 O2' FAD B 401 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MLY A 138 152.69 179.19 REMARK 500 LYS A 153 32.31 70.16 REMARK 500 PRO A 155 106.05 -50.53 REMARK 500 TYR A 170 44.70 -109.86 REMARK 500 PRO A 181 -177.26 -67.93 REMARK 500 ARG A 182 -72.58 -51.74 REMARK 500 ASP A 184 93.99 -67.32 REMARK 500 TYR A 185 52.11 -97.09 REMARK 500 ASN A 211 34.44 -92.69 REMARK 500 ASN A 219 -76.40 -56.59 REMARK 500 MLY A 296 -116.88 47.52 REMARK 500 TYR B 170 43.32 -104.08 REMARK 500 ASN B 211 37.78 -91.37 REMARK 500 MLY B 296 -124.28 42.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5X6P RELATED DB: PDB REMARK 900 RELATED ID: 5X6Q RELATED DB: PDB REMARK 900 RELATED ID: 5X6R RELATED DB: PDB DBREF 5X68 A 1 374 UNP O15229 KMO_HUMAN 1 374 DBREF 5X68 B 1 374 UNP O15229 KMO_HUMAN 1 374 SEQADV 5X68 MET A -5 UNP O15229 EXPRESSION TAG SEQADV 5X68 ARG A -4 UNP O15229 EXPRESSION TAG SEQADV 5X68 GLY A -3 UNP O15229 EXPRESSION TAG SEQADV 5X68 SER A -2 UNP O15229 EXPRESSION TAG SEQADV 5X68 GLY A -1 UNP O15229 EXPRESSION TAG SEQADV 5X68 SER A 0 UNP O15229 EXPRESSION TAG SEQADV 5X68 ALA A 375 UNP O15229 EXPRESSION TAG SEQADV 5X68 ALA A 376 UNP O15229 EXPRESSION TAG SEQADV 5X68 ALA A 377 UNP O15229 EXPRESSION TAG SEQADV 5X68 LEU A 378 UNP O15229 EXPRESSION TAG SEQADV 5X68 GLU A 379 UNP O15229 EXPRESSION TAG SEQADV 5X68 HIS A 380 UNP O15229 EXPRESSION TAG SEQADV 5X68 HIS A 381 UNP O15229 EXPRESSION TAG SEQADV 5X68 HIS A 382 UNP O15229 EXPRESSION TAG SEQADV 5X68 HIS A 383 UNP O15229 EXPRESSION TAG SEQADV 5X68 HIS A 384 UNP O15229 EXPRESSION TAG SEQADV 5X68 HIS A 385 UNP O15229 EXPRESSION TAG SEQADV 5X68 MET B -5 UNP O15229 EXPRESSION TAG SEQADV 5X68 ARG B -4 UNP O15229 EXPRESSION TAG SEQADV 5X68 GLY B -3 UNP O15229 EXPRESSION TAG SEQADV 5X68 SER B -2 UNP O15229 EXPRESSION TAG SEQADV 5X68 GLY B -1 UNP O15229 EXPRESSION TAG SEQADV 5X68 SER B 0 UNP O15229 EXPRESSION TAG SEQADV 5X68 ALA B 375 UNP O15229 EXPRESSION TAG SEQADV 5X68 ALA B 376 UNP O15229 EXPRESSION TAG SEQADV 5X68 ALA B 377 UNP O15229 EXPRESSION TAG SEQADV 5X68 LEU B 378 UNP O15229 EXPRESSION TAG SEQADV 5X68 GLU B 379 UNP O15229 EXPRESSION TAG SEQADV 5X68 HIS B 380 UNP O15229 EXPRESSION TAG SEQADV 5X68 HIS B 381 UNP O15229 EXPRESSION TAG SEQADV 5X68 HIS B 382 UNP O15229 EXPRESSION TAG SEQADV 5X68 HIS B 383 UNP O15229 EXPRESSION TAG SEQADV 5X68 HIS B 384 UNP O15229 EXPRESSION TAG SEQADV 5X68 HIS B 385 UNP O15229 EXPRESSION TAG SEQRES 1 A 391 MET ARG GLY SER GLY SER MET ASP SER SER VAL ILE GLN SEQRES 2 A 391 ARG LYS LYS VAL ALA VAL ILE GLY GLY GLY LEU VAL GLY SEQRES 3 A 391 SER LEU GLN ALA CYS PHE LEU ALA LYS ARG ASN PHE GLN SEQRES 4 A 391 ILE ASP VAL TYR GLU ALA ARG GLU ASP THR ARG VAL ALA SEQRES 5 A 391 THR PHE THR ARG GLY ARG SER ILE ASN LEU ALA LEU SER SEQRES 6 A 391 HIS ARG GLY ARG GLN ALA LEU LYS ALA VAL GLY LEU GLU SEQRES 7 A 391 ASP GLN ILE VAL SER GLN GLY ILE PRO MET ARG ALA ARG SEQRES 8 A 391 MET ILE HIS SER LEU SER GLY LYS LYS SER ALA ILE PRO SEQRES 9 A 391 TYR GLY THR LYS SER GLN TYR ILE LEU SER VAL SER ARG SEQRES 10 A 391 GLU ASN LEU ASN LYS ASP LEU LEU THR ALA ALA GLU LYS SEQRES 11 A 391 TYR PRO ASN VAL LYS MET HIS PHE ASN HIS ARG LEU LEU SEQRES 12 A 391 MLY CYS ASN PRO GLU GLU GLY MET ILE THR VAL LEU GLY SEQRES 13 A 391 SER ASP LYS VAL PRO LYS ASP VAL THR CYS ASP LEU ILE SEQRES 14 A 391 VAL GLY CYS ASP GLY ALA TYR SER THR VAL ARG SER HIS SEQRES 15 A 391 LEU MET MLY LYS PRO ARG PHE ASP TYR SER GLN GLN TYR SEQRES 16 A 391 ILE PRO HIS GLY TYR MET GLU LEU THR ILE PRO PRO LYS SEQRES 17 A 391 ASN GLY ASP TYR ALA MET GLU PRO ASN TYR LEU HIS ILE SEQRES 18 A 391 TRP PRO ARG ASN THR PHE MET MET ILE ALA LEU PRO ASN SEQRES 19 A 391 MET ASN LYS SER PHE THR CYS THR LEU PHE MET PRO PHE SEQRES 20 A 391 GLU GLU PHE GLU LYS LEU LEU THR SER ASN ASP VAL VAL SEQRES 21 A 391 ASP PHE PHE GLN LYS TYR PHE PRO ASP ALA ILE PRO LEU SEQRES 22 A 391 ILE GLY GLU LYS LEU LEU VAL GLN ASP PHE PHE LEU LEU SEQRES 23 A 391 PRO ALA GLN PRO MET ILE SER VAL MLY CYS SER SER PHE SEQRES 24 A 391 HIS PHE MLY SER HIS CYS VAL LEU LEU GLY ASP ALA ALA SEQRES 25 A 391 HIS ALA ILE VAL PRO PHE PHE GLY GLN GLY MET ASN ALA SEQRES 26 A 391 GLY PHE GLU ASP CYS LEU VAL PHE ASP GLU LEU MET ASP SEQRES 27 A 391 LYS PHE SER ASN ASP LEU SER LEU CYS LEU PRO VAL PHE SEQRES 28 A 391 SER ARG LEU ARG ILE PRO ASP ASP HIS ALA ILE SER ASP SEQRES 29 A 391 LEU SER MET TYR ASN TYR ILE GLU MET ARG ALA HIS VAL SEQRES 30 A 391 ASN SER SER ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS SEQRES 31 A 391 HIS SEQRES 1 B 391 MET ARG GLY SER GLY SER MET ASP SER SER VAL ILE GLN SEQRES 2 B 391 ARG LYS LYS VAL ALA VAL ILE GLY GLY GLY LEU VAL GLY SEQRES 3 B 391 SER LEU GLN ALA CYS PHE LEU ALA LYS ARG ASN PHE GLN SEQRES 4 B 391 ILE ASP VAL TYR GLU ALA ARG GLU ASP THR ARG VAL ALA SEQRES 5 B 391 THR PHE THR ARG GLY ARG SER ILE ASN LEU ALA LEU SER SEQRES 6 B 391 HIS ARG GLY ARG GLN ALA LEU LYS ALA VAL GLY LEU GLU SEQRES 7 B 391 ASP GLN ILE VAL SER GLN GLY ILE PRO MET ARG ALA ARG SEQRES 8 B 391 MET ILE HIS SER LEU SER GLY LYS LYS SER ALA ILE PRO SEQRES 9 B 391 TYR GLY THR LYS SER GLN TYR ILE LEU SER VAL SER ARG SEQRES 10 B 391 GLU ASN LEU ASN LYS ASP LEU LEU THR ALA ALA GLU LYS SEQRES 11 B 391 TYR PRO ASN VAL LYS MET HIS PHE ASN HIS ARG LEU LEU SEQRES 12 B 391 MLY CYS ASN PRO GLU GLU GLY MET ILE THR VAL LEU GLY SEQRES 13 B 391 SER ASP LYS VAL PRO LYS ASP VAL THR CYS ASP LEU ILE SEQRES 14 B 391 VAL GLY CYS ASP GLY ALA TYR SER THR VAL ARG SER HIS SEQRES 15 B 391 LEU MET MLY LYS PRO ARG PHE ASP TYR SER GLN GLN TYR SEQRES 16 B 391 ILE PRO HIS GLY TYR MET GLU LEU THR ILE PRO PRO LYS SEQRES 17 B 391 ASN GLY ASP TYR ALA MET GLU PRO ASN TYR LEU HIS ILE SEQRES 18 B 391 TRP PRO ARG ASN THR PHE MET MET ILE ALA LEU PRO ASN SEQRES 19 B 391 MET ASN LYS SER PHE THR CYS THR LEU PHE MET PRO PHE SEQRES 20 B 391 GLU GLU PHE GLU LYS LEU LEU THR SER ASN ASP VAL VAL SEQRES 21 B 391 ASP PHE PHE GLN LYS TYR PHE PRO ASP ALA ILE PRO LEU SEQRES 22 B 391 ILE GLY GLU LYS LEU LEU VAL GLN ASP PHE PHE LEU LEU SEQRES 23 B 391 PRO ALA GLN PRO MET ILE SER VAL MLY CYS SER SER PHE SEQRES 24 B 391 HIS PHE MLY SER HIS CYS VAL LEU LEU GLY ASP ALA ALA SEQRES 25 B 391 HIS ALA ILE VAL PRO PHE PHE GLY GLN GLY MET ASN ALA SEQRES 26 B 391 GLY PHE GLU ASP CYS LEU VAL PHE ASP GLU LEU MET ASP SEQRES 27 B 391 LYS PHE SER ASN ASP LEU SER LEU CYS LEU PRO VAL PHE SEQRES 28 B 391 SER ARG LEU ARG ILE PRO ASP ASP HIS ALA ILE SER ASP SEQRES 29 B 391 LEU SER MET TYR ASN TYR ILE GLU MET ARG ALA HIS VAL SEQRES 30 B 391 ASN SER SER ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS SEQRES 31 B 391 HIS MODRES 5X68 MLY A 138 LYS MODIFIED RESIDUE MODRES 5X68 MLY A 179 LYS MODIFIED RESIDUE MODRES 5X68 MLY A 289 LYS MODIFIED RESIDUE MODRES 5X68 MLY A 296 LYS MODIFIED RESIDUE MODRES 5X68 MLY B 138 LYS MODIFIED RESIDUE MODRES 5X68 MLY B 179 LYS MODIFIED RESIDUE MODRES 5X68 MLY B 289 LYS MODIFIED RESIDUE MODRES 5X68 MLY B 296 LYS MODIFIED RESIDUE HET MLY A 138 9 HET MLY A 179 11 HET MLY A 289 11 HET MLY A 296 9 HET MLY B 138 11 HET MLY B 179 11 HET MLY B 289 11 HET MLY B 296 11 HET FAD A 401 53 HET FAD B 401 53 HETNAM MLY N-DIMETHYL-LYSINE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 1 MLY 8(C8 H18 N2 O2) FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 HOH *131(H2 O) HELIX 1 AA1 GLY A 17 LYS A 29 1 13 HELIX 2 AA2 SER A 59 VAL A 69 1 11 HELIX 3 AA3 LEU A 71 SER A 77 1 7 HELIX 4 AA4 THR A 101 TYR A 105 5 5 HELIX 5 AA5 ARG A 111 LYS A 124 1 14 HELIX 6 AA6 SER A 171 MET A 178 1 8 HELIX 7 AA7 PHE A 241 GLU A 245 1 5 HELIX 8 AA8 THR A 249 PHE A 261 1 13 HELIX 9 AA9 ASP A 263 GLY A 269 1 7 HELIX 10 AB1 GLY A 269 PHE A 278 1 10 HELIX 11 AB2 GLY A 303 ALA A 305 5 3 HELIX 12 AB3 GLN A 315 PHE A 334 1 20 HELIX 13 AB4 ASP A 337 ILE A 350 1 14 HELIX 14 AB5 GLY B 17 ARG B 30 1 14 HELIX 15 AB6 SER B 59 VAL B 69 1 11 HELIX 16 AB7 LEU B 71 GLN B 78 1 8 HELIX 17 AB8 THR B 101 TYR B 105 5 5 HELIX 18 AB9 ARG B 111 LYS B 124 1 14 HELIX 19 AC1 PRO B 141 GLU B 143 5 3 HELIX 20 AC2 SER B 171 MET B 178 1 8 HELIX 21 AC3 TYR B 185 TYR B 189 5 5 HELIX 22 AC4 PHE B 241 LYS B 246 1 6 HELIX 23 AC5 THR B 249 PHE B 261 1 13 HELIX 24 AC6 ASP B 263 GLY B 269 1 7 HELIX 25 AC7 GLY B 269 PHE B 278 1 10 HELIX 26 AC8 GLY B 303 ALA B 305 5 3 HELIX 27 AC9 GLN B 315 PHE B 334 1 20 HELIX 28 AD1 ASP B 337 ILE B 350 1 14 SHEET 1 AA1 6 VAL A 128 HIS A 131 0 SHEET 2 AA1 6 GLN A 33 TYR A 37 1 N VAL A 36 O LYS A 129 SHEET 3 AA1 6 LYS A 10 ILE A 14 1 N VAL A 11 O GLN A 33 SHEET 4 AA1 6 LEU A 162 GLY A 165 1 O VAL A 164 N ALA A 12 SHEET 5 AA1 6 CYS A 299 LEU A 301 1 O VAL A 300 N GLY A 165 SHEET 6 AA1 6 HIS A 294 PHE A 295 -1 N PHE A 295 O CYS A 299 SHEET 1 AA2 3 ASN A 55 LEU A 58 0 SHEET 2 AA2 3 ILE A 106 SER A 110 -1 O LEU A 107 N LEU A 58 SHEET 3 AA2 3 ILE A 80 MET A 82 -1 N MET A 82 O ILE A 106 SHEET 1 AA3 7 LYS A 94 PRO A 98 0 SHEET 2 AA3 7 ALA A 84 HIS A 88 -1 N ARG A 85 O ILE A 97 SHEET 3 AA3 7 TYR A 212 PRO A 217 1 O ILE A 215 N HIS A 88 SHEET 4 AA3 7 MET A 222 PRO A 227 -1 O MET A 223 N TRP A 216 SHEET 5 AA3 7 PHE A 233 PRO A 240 -1 O PHE A 238 N MET A 222 SHEET 6 AA3 7 TYR A 189 ILE A 199 -1 N GLY A 193 O MET A 239 SHEET 7 AA3 7 GLN A 283 ILE A 286 -1 O GLN A 283 N TYR A 194 SHEET 1 AA4 3 MLY A 138 ASN A 140 0 SHEET 2 AA4 3 MET A 145 VAL A 148 -1 O MET A 145 N ASN A 140 SHEET 3 AA4 3 LYS A 156 THR A 159 -1 O VAL A 158 N ILE A 146 SHEET 1 AA5 3 HIS A 307 ALA A 308 0 SHEET 2 AA5 3 VAL A 288 CYS A 290 -1 N VAL A 288 O ALA A 308 SHEET 3 AA5 3 ASN B 363 ILE B 365 1 O ILE B 365 N MLY A 289 SHEET 1 AA6 3 ASN A 363 ILE A 365 0 SHEET 2 AA6 3 VAL B 288 CYS B 290 1 O MLY B 289 N ILE A 365 SHEET 3 AA6 3 HIS B 307 ALA B 308 -1 O ALA B 308 N VAL B 288 SHEET 1 AA7 6 VAL B 128 HIS B 131 0 SHEET 2 AA7 6 GLN B 33 TYR B 37 1 N VAL B 36 O HIS B 131 SHEET 3 AA7 6 LYS B 10 ILE B 14 1 N VAL B 11 O GLN B 33 SHEET 4 AA7 6 LEU B 162 GLY B 165 1 O VAL B 164 N ALA B 12 SHEET 5 AA7 6 CYS B 299 LEU B 301 1 O VAL B 300 N GLY B 165 SHEET 6 AA7 6 HIS B 294 PHE B 295 -1 N PHE B 295 O CYS B 299 SHEET 1 AA8 3 ASN B 55 LEU B 58 0 SHEET 2 AA8 3 ILE B 106 SER B 110 -1 O LEU B 107 N LEU B 58 SHEET 3 AA8 3 ILE B 80 MET B 82 -1 N ILE B 80 O SER B 108 SHEET 1 AA9 6 LYS B 94 PRO B 98 0 SHEET 2 AA9 6 ALA B 84 HIS B 88 -1 N ARG B 85 O ILE B 97 SHEET 3 AA9 6 TYR B 212 PRO B 217 1 O ILE B 215 N HIS B 88 SHEET 4 AA9 6 MET B 222 PRO B 227 -1 O MET B 223 N TRP B 216 SHEET 5 AA9 6 PHE B 233 PRO B 240 -1 O PHE B 238 N MET B 222 SHEET 6 AA9 6 HIS B 192 ILE B 199 -1 N MET B 195 O LEU B 237 SHEET 1 AB1 3 ARG B 135 ASN B 140 0 SHEET 2 AB1 3 MET B 145 LEU B 149 -1 O MET B 145 N ASN B 140 SHEET 3 AB1 3 PRO B 155 THR B 159 -1 O LYS B 156 N VAL B 148 LINK C LEU A 137 N MLY A 138 1555 1555 1.33 LINK C MLY A 138 N CYS A 139 1555 1555 1.33 LINK C MET A 178 N MLY A 179 1555 1555 1.33 LINK C MLY A 179 N LYS A 180 1555 1555 1.33 LINK C VAL A 288 N MLY A 289 1555 1555 1.33 LINK C MLY A 289 N CYS A 290 1555 1555 1.33 LINK C PHE A 295 N MLY A 296 1555 1555 1.33 LINK C MLY A 296 N SER A 297 1555 1555 1.33 LINK C LEU B 137 N MLY B 138 1555 1555 1.33 LINK C MLY B 138 N CYS B 139 1555 1555 1.33 LINK C MET B 178 N MLY B 179 1555 1555 1.33 LINK C MLY B 179 N LYS B 180 1555 1555 1.33 LINK C VAL B 288 N MLY B 289 1555 1555 1.33 LINK C MLY B 289 N CYS B 290 1555 1555 1.33 LINK C PHE B 295 N MLY B 296 1555 1555 1.33 LINK C MLY B 296 N SER B 297 1555 1555 1.33 SITE 1 AC1 31 GLY A 15 GLY A 17 LEU A 18 VAL A 19 SITE 2 AC1 31 TYR A 37 GLU A 38 ALA A 39 ARG A 40 SITE 3 AC1 31 LEU A 56 ALA A 57 ARG A 111 HIS A 134 SITE 4 AC1 31 ARG A 135 LEU A 136 CYS A 166 ASP A 167 SITE 5 AC1 31 GLY A 168 THR A 172 GLY A 303 ASP A 304 SITE 6 AC1 31 PRO A 311 GLN A 315 GLY A 316 MET A 317 SITE 7 AC1 31 ASN A 318 HOH A 501 HOH A 516 HOH A 524 SITE 8 AC1 31 HOH A 526 HOH A 530 HOH A 547 SITE 1 AC2 31 GLY B 15 GLY B 17 LEU B 18 VAL B 19 SITE 2 AC2 31 TYR B 37 GLU B 38 ALA B 39 ARG B 40 SITE 3 AC2 31 LEU B 56 ALA B 57 ARG B 111 HIS B 134 SITE 4 AC2 31 ARG B 135 LEU B 136 CYS B 166 ASP B 167 SITE 5 AC2 31 THR B 172 GLY B 303 ASP B 304 PRO B 311 SITE 6 AC2 31 GLN B 315 GLY B 316 MET B 317 ASN B 318 SITE 7 AC2 31 HOH B 502 HOH B 505 HOH B 514 HOH B 521 SITE 8 AC2 31 HOH B 523 HOH B 533 HOH B 543 CRYST1 176.736 176.736 89.434 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005658 0.003267 0.000000 0.00000 SCALE2 0.000000 0.006533 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011181 0.00000