HEADER METAL BINDING PROTEIN/DNA 22-FEB-17 5X6H TITLE CRYSTAL STRUCTURE OF SMAD5-MH1/GC-BRE DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOTHERS AGAINST DECAPENTAPLEGIC HOMOLOG 5; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: MH1 DOMAIN (UNP RESIDUES 1-143); COMPND 5 SYNONYM: MOTHERS AGAINST DPP HOMOLOG 5,DWARFIN-C,DWF-C,SMAD FAMILY COMPND 6 MEMBER 5,MSMAD5; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(P*GP*TP*AP*TP*GP*GP*CP*GP*CP*CP*AP*TP*AP*C)-3'); COMPND 10 CHAIN: E; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SMAD5, MADH5, MSMAD5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS SMAD MH1 DOMAIN, GC-RICH DNA, METAL BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.CHAI,J.WANG,Z.X.WANG,J.W.WU REVDAT 2 22-NOV-23 5X6H 1 REMARK REVDAT 1 15-MAR-17 5X6H 0 SPRSDE 15-MAR-17 5X6H 4ZL2 JRNL AUTH N.CHAI,W.X.LI,J.WANG,Z.X.WANG,S.M.YANG,J.W.WU JRNL TITL STRUCTURAL BASIS FOR THE SMAD5 MH1 DOMAIN TO RECOGNIZE JRNL TITL 2 DIFFERENT DNA SEQUENCES. JRNL REF NUCLEIC ACIDS RES. V. 43 9051 2015 JRNL REFN ESSN 1362-4962 JRNL PMID 26304548 JRNL DOI 10.1093/NAR/GKV848 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 4079 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.440 REMARK 3 FREE R VALUE TEST SET COUNT : 181 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4387 - 3.0996 0.97 3898 181 0.2017 0.2311 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1193 REMARK 3 ANGLE : 1.228 1680 REMARK 3 CHIRALITY : 0.060 191 REMARK 3 PLANARITY : 0.007 162 REMARK 3 DIHEDRAL : 23.690 444 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4736 -23.9974 24.7359 REMARK 3 T TENSOR REMARK 3 T11: 2.0934 T22: 1.4472 REMARK 3 T33: 2.1468 T12: -0.4487 REMARK 3 T13: 0.0767 T23: -0.1173 REMARK 3 L TENSOR REMARK 3 L11: 1.3889 L22: 0.3206 REMARK 3 L33: 3.4507 L12: -0.3195 REMARK 3 L13: 0.5760 L23: -1.0609 REMARK 3 S TENSOR REMARK 3 S11: 0.2507 S12: 1.8433 S13: -0.5620 REMARK 3 S21: -2.4733 S22: 0.5858 S23: -0.9353 REMARK 3 S31: -1.3866 S32: 0.4941 S33: -0.7995 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4280 -31.1275 28.0323 REMARK 3 T TENSOR REMARK 3 T11: 0.5860 T22: 0.9557 REMARK 3 T33: 0.6843 T12: -0.1848 REMARK 3 T13: 0.0019 T23: 0.1338 REMARK 3 L TENSOR REMARK 3 L11: 2.5476 L22: 2.1420 REMARK 3 L33: 3.2437 L12: 1.4817 REMARK 3 L13: 1.1477 L23: -1.2202 REMARK 3 S TENSOR REMARK 3 S11: -0.2075 S12: 0.2518 S13: 0.1264 REMARK 3 S21: 0.1659 S22: 0.0754 S23: -0.8840 REMARK 3 S31: -0.1771 S32: 0.9720 S33: 0.1889 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 45 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3798 -31.1882 15.1507 REMARK 3 T TENSOR REMARK 3 T11: 1.3562 T22: 1.4754 REMARK 3 T33: 0.7426 T12: -0.5361 REMARK 3 T13: 0.5312 T23: 0.3090 REMARK 3 L TENSOR REMARK 3 L11: 4.3575 L22: 1.1999 REMARK 3 L33: 7.4585 L12: 1.9305 REMARK 3 L13: 1.8980 L23: 0.4240 REMARK 3 S TENSOR REMARK 3 S11: 0.0503 S12: 1.0227 S13: 1.2470 REMARK 3 S21: -0.1656 S22: 1.1045 S23: 0.3399 REMARK 3 S31: -0.4564 S32: 0.9953 S33: 0.5556 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4918 -29.6518 10.9268 REMARK 3 T TENSOR REMARK 3 T11: 2.1014 T22: 1.9087 REMARK 3 T33: 0.7570 T12: 0.2249 REMARK 3 T13: -0.2711 T23: 0.2683 REMARK 3 L TENSOR REMARK 3 L11: 5.8877 L22: 3.9391 REMARK 3 L33: 8.1130 L12: -2.7613 REMARK 3 L13: -4.3833 L23: 3.8163 REMARK 3 S TENSOR REMARK 3 S11: -0.3737 S12: 0.6521 S13: 0.9545 REMARK 3 S21: 0.3515 S22: -0.2789 S23: -0.8461 REMARK 3 S31: -1.0018 S32: -1.5396 S33: 0.3351 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 67 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8516 -43.0388 26.8949 REMARK 3 T TENSOR REMARK 3 T11: 0.5320 T22: 0.8939 REMARK 3 T33: 0.7012 T12: 0.0144 REMARK 3 T13: -0.2191 T23: -0.1309 REMARK 3 L TENSOR REMARK 3 L11: 1.1809 L22: 7.0825 REMARK 3 L33: 5.7409 L12: 2.2462 REMARK 3 L13: -1.7230 L23: -6.2763 REMARK 3 S TENSOR REMARK 3 S11: -0.1923 S12: 0.5506 S13: -0.6665 REMARK 3 S21: -0.4314 S22: -0.2233 S23: -0.2083 REMARK 3 S31: 0.3476 S32: -0.0405 S33: 0.3840 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 75 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8915 -30.0313 29.4190 REMARK 3 T TENSOR REMARK 3 T11: 0.7235 T22: 0.8276 REMARK 3 T33: 0.4901 T12: 0.2052 REMARK 3 T13: -0.0968 T23: -0.1049 REMARK 3 L TENSOR REMARK 3 L11: 4.3987 L22: 8.9300 REMARK 3 L33: 8.5266 L12: 1.3321 REMARK 3 L13: -2.4185 L23: 0.3873 REMARK 3 S TENSOR REMARK 3 S11: 0.3293 S12: -1.0387 S13: 0.8623 REMARK 3 S21: -1.1782 S22: 0.1781 S23: 0.1228 REMARK 3 S31: -1.6768 S32: -0.5682 S33: -0.1628 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 104 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1391 -34.5694 18.5846 REMARK 3 T TENSOR REMARK 3 T11: 1.2034 T22: 1.4143 REMARK 3 T33: 0.5102 T12: 0.1797 REMARK 3 T13: -0.2762 T23: -0.0285 REMARK 3 L TENSOR REMARK 3 L11: 5.4979 L22: 4.9299 REMARK 3 L33: 3.8142 L12: -0.3327 REMARK 3 L13: 1.0574 L23: -2.3818 REMARK 3 S TENSOR REMARK 3 S11: -0.0924 S12: 1.6455 S13: 0.1533 REMARK 3 S21: -1.5824 S22: 0.4415 S23: 0.7906 REMARK 3 S31: -0.4973 S32: -1.2214 S33: -0.0983 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5167 -42.2538 43.2898 REMARK 3 T TENSOR REMARK 3 T11: 0.1622 T22: 1.4765 REMARK 3 T33: 0.6895 T12: 0.0544 REMARK 3 T13: -0.1016 T23: 0.1846 REMARK 3 L TENSOR REMARK 3 L11: 2.8674 L22: 5.2619 REMARK 3 L33: 3.6914 L12: 1.8335 REMARK 3 L13: -0.9944 L23: 0.5350 REMARK 3 S TENSOR REMARK 3 S11: -0.4515 S12: -2.1473 S13: -0.6891 REMARK 3 S21: -0.1829 S22: 0.0111 S23: -0.0257 REMARK 3 S31: 0.5647 S32: 0.3881 S33: 0.1111 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5X6H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1300003004. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4102 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.44900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3KMP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, PH 7.0, 12% PEG 3350, 0.2M REMARK 280 KNO3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.90300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.80600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.90300 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.80600 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 27.90300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 55.80600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 27.90300 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 55.80600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 83.70900 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 SER B 3 REMARK 465 MET B 4 REMARK 465 ALA B 5 REMARK 465 SER B 6 REMARK 465 LEU B 7 REMARK 465 PHE B 8 REMARK 465 SER B 9 REMARK 465 PHE B 10 REMARK 465 THR B 11 REMARK 465 GLY B 20 REMARK 465 TRP B 21 REMARK 465 LYS B 22 REMARK 465 GLN B 23 REMARK 465 GLY B 24 REMARK 465 ASP B 25 REMARK 465 GLU B 26 REMARK 465 PRO B 134 REMARK 465 VAL B 135 REMARK 465 LEU B 136 REMARK 465 PRO B 137 REMARK 465 PRO B 138 REMARK 465 VAL B 139 REMARK 465 LEU B 140 REMARK 465 VAL B 141 REMARK 465 PRO B 142 REMARK 465 ARG B 143 REMARK 465 LEU B 144 REMARK 465 GLU B 145 REMARK 465 HIS B 146 REMARK 465 HIS B 147 REMARK 465 HIS B 148 REMARK 465 HIS B 149 REMARK 465 HIS B 150 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 12 OG REMARK 470 LYS B 16 CG CD CE NZ REMARK 470 ARG B 17 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 19 CG CD1 CD2 REMARK 470 GLU B 27 CG CD OE1 OE2 REMARK 470 GLU B 28 CG CD OE1 OE2 REMARK 470 LYS B 29 CG CD CE NZ REMARK 470 GLU B 32 CG CD OE1 OE2 REMARK 470 LYS B 33 CG CD CE NZ REMARK 470 ASP B 36 CG OD1 OD2 REMARK 470 LYS B 43 CG CD CE NZ REMARK 470 LYS B 44 CG CD CE NZ REMARK 470 GLU B 50 CG CD OE1 OE2 REMARK 470 GLU B 51 CG CD OE1 OE2 REMARK 470 GLU B 53 CG CD OE1 OE2 REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 GLN B 61 CG CD OE1 NE2 REMARK 470 GLN B 99 CG CD OE1 NE2 REMARK 470 GLU B 111 CG CD OE1 OE2 REMARK 470 LYS B 119 CG CD CE NZ REMARK 470 GLU B 120 CG CD OE1 OE2 REMARK 470 GLU B 132 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG E 1 O3' DG E 1 C3' -0.041 REMARK 500 DG E 8 O3' DG E 8 C3' -0.049 REMARK 500 DT E 12 O3' DT E 12 C3' -0.044 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 80 -12.48 82.20 REMARK 500 ARG B 94 -78.13 -129.84 REMARK 500 GLN B 99 -73.08 -94.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 65 SG REMARK 620 2 CYS B 110 SG 103.8 REMARK 620 3 CYS B 122 SG 100.1 116.1 REMARK 620 4 HIS B 127 ND1 124.2 118.8 92.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5X6G RELATED DB: PDB REMARK 900 RELATED ID: 5X6M RELATED DB: PDB DBREF 5X6H B 1 143 UNP P97454 SMAD5_MOUSE 1 143 DBREF 5X6H E 1 14 PDB 5X6H 5X6H 1 14 SEQADV 5X6H LEU B 144 UNP P97454 EXPRESSION TAG SEQADV 5X6H GLU B 145 UNP P97454 EXPRESSION TAG SEQADV 5X6H HIS B 146 UNP P97454 EXPRESSION TAG SEQADV 5X6H HIS B 147 UNP P97454 EXPRESSION TAG SEQADV 5X6H HIS B 148 UNP P97454 EXPRESSION TAG SEQADV 5X6H HIS B 149 UNP P97454 EXPRESSION TAG SEQADV 5X6H HIS B 150 UNP P97454 EXPRESSION TAG SEQRES 1 B 150 MET THR SER MET ALA SER LEU PHE SER PHE THR SER PRO SEQRES 2 B 150 ALA VAL LYS ARG LEU LEU GLY TRP LYS GLN GLY ASP GLU SEQRES 3 B 150 GLU GLU LYS TRP ALA GLU LYS ALA VAL ASP ALA LEU VAL SEQRES 4 B 150 LYS LYS LEU LYS LYS LYS LYS GLY ALA MET GLU GLU LEU SEQRES 5 B 150 GLU LYS ALA LEU SER SER PRO GLY GLN PRO SER LYS CYS SEQRES 6 B 150 VAL THR ILE PRO ARG SER LEU ASP GLY ARG LEU GLN VAL SEQRES 7 B 150 SER HIS ARG LYS GLY LEU PRO HIS VAL ILE TYR CYS ARG SEQRES 8 B 150 VAL TRP ARG TRP PRO ASP LEU GLN SER HIS HIS GLU LEU SEQRES 9 B 150 LYS PRO LEU ASP ILE CYS GLU PHE PRO PHE GLY SER LYS SEQRES 10 B 150 GLN LYS GLU VAL CYS ILE ASN PRO TYR HIS TYR LYS ARG SEQRES 11 B 150 VAL GLU SER PRO VAL LEU PRO PRO VAL LEU VAL PRO ARG SEQRES 12 B 150 LEU GLU HIS HIS HIS HIS HIS SEQRES 1 E 14 DG DT DA DT DG DG DC DG DC DC DA DT DA SEQRES 2 E 14 DC HET ZN B 201 1 HETNAM ZN ZINC ION FORMUL 3 ZN ZN 2+ HELIX 1 AA1 SER B 12 LEU B 19 1 8 HELIX 2 AA2 GLU B 28 LYS B 45 1 18 HELIX 3 AA3 GLY B 47 SER B 58 1 12 HELIX 4 AA4 LEU B 84 ARG B 94 1 11 HELIX 5 AA5 SER B 100 HIS B 102 5 3 HELIX 6 AA6 ASN B 124 TYR B 126 5 3 SHEET 1 AA1 2 THR B 67 PRO B 69 0 SHEET 2 AA1 2 GLU B 120 CYS B 122 -1 O VAL B 121 N ILE B 68 SHEET 1 AA2 2 LEU B 76 VAL B 78 0 SHEET 2 AA2 2 ARG B 81 GLY B 83 -1 O ARG B 81 N VAL B 78 SHEET 1 AA3 2 LEU B 104 PRO B 106 0 SHEET 2 AA3 2 TYR B 128 ARG B 130 -1 O LYS B 129 N LYS B 105 LINK SG CYS B 65 ZN ZN B 201 1555 1555 2.38 LINK SG CYS B 110 ZN ZN B 201 1555 1555 2.53 LINK SG CYS B 122 ZN ZN B 201 1555 1555 2.26 LINK ND1 HIS B 127 ZN ZN B 201 1555 1555 1.88 SITE 1 AC1 4 CYS B 65 CYS B 110 CYS B 122 HIS B 127 CRYST1 92.867 92.867 83.709 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010768 0.006217 0.000000 0.00000 SCALE2 0.000000 0.012434 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011946 0.00000