HEADER TRANSFERASE 22-FEB-17 5X6I TITLE CRYSTAL STRUCTURE OF B. SUBTILIS ADENYLATE KINASE VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLATE KINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: I26T; COMPND 5 SYNONYM: AK,ATP-AMP TRANSPHOSPHORYLASE,ATP:AMP PHOSPHOTRANSFERASE, COMPND 6 ADENYLATE MONOPHOSPHATE KINASE; COMPND 7 EC: 2.7.4.3; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: ADK, B4417_1526, SC09_CONTIG26ORF00083; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHOTRANSFERASE ACTIVITY, ATP BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MOON,E.BAE REVDAT 3 22-NOV-23 5X6I 1 LINK REVDAT 2 11-SEP-19 5X6I 1 JRNL REVDAT 1 28-FEB-18 5X6I 0 JRNL AUTH S.MOON,J.KIM,J.KOO,E.BAE JRNL TITL STRUCTURAL AND MUTATIONAL ANALYSES OF PSYCHROPHILIC AND JRNL TITL 2 MESOPHILIC ADENYLATE KINASES HIGHLIGHT THE ROLE OF JRNL TITL 3 HYDROPHOBIC INTERACTIONS IN PROTEIN THERMAL STABILITY. JRNL REF STRUCT DYN. V. 6 24702 2019 JRNL REFN ESSN 2329-7778 JRNL PMID 31111079 JRNL DOI 10.1063/1.5089707 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 12993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 679 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 874 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1654 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 104 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.94000 REMARK 3 B22 (A**2) : -2.20000 REMARK 3 B33 (A**2) : 1.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.206 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.197 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.161 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.097 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1741 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1627 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2364 ; 1.874 ; 2.036 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3770 ; 0.890 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 211 ; 6.195 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 81 ;37.976 ;25.556 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 307 ;14.280 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;12.364 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 260 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1928 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 352 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 847 ; 2.719 ; 3.318 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 846 ; 2.716 ; 3.317 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1057 ; 3.899 ; 4.957 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1058 ; 3.898 ; 4.958 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 894 ; 3.615 ; 3.725 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 895 ; 3.613 ; 3.724 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1308 ; 5.560 ; 5.409 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1998 ; 7.584 ;26.958 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1969 ; 7.574 ;26.769 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 30 REMARK 3 RESIDUE RANGE : A 61 A 126 REMARK 3 RESIDUE RANGE : A 165 A 212 REMARK 3 ORIGIN FOR THE GROUP (A): 6.8833 -3.1452 -11.2145 REMARK 3 T TENSOR REMARK 3 T11: 0.0581 T22: 0.0555 REMARK 3 T33: 0.0677 T12: 0.0248 REMARK 3 T13: 0.0540 T23: 0.0348 REMARK 3 L TENSOR REMARK 3 L11: 0.2117 L22: 1.1140 REMARK 3 L33: 0.9902 L12: -0.0252 REMARK 3 L13: -0.2737 L23: -0.1586 REMARK 3 S TENSOR REMARK 3 S11: -0.1033 S12: -0.0125 S13: -0.0776 REMARK 3 S21: 0.1173 S22: 0.1657 S23: 0.0906 REMARK 3 S31: 0.0601 S32: -0.0908 S33: -0.0623 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 60 REMARK 3 ORIGIN FOR THE GROUP (A): 14.2141 13.3943 -11.7868 REMARK 3 T TENSOR REMARK 3 T11: 0.1338 T22: 0.0129 REMARK 3 T33: 0.0475 T12: 0.0089 REMARK 3 T13: 0.0058 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 0.8542 L22: 2.0721 REMARK 3 L33: 0.9048 L12: -0.0566 REMARK 3 L13: -0.5747 L23: -0.6491 REMARK 3 S TENSOR REMARK 3 S11: 0.0521 S12: 0.0117 S13: 0.1353 REMARK 3 S21: 0.1866 S22: 0.0253 S23: 0.0436 REMARK 3 S31: -0.1092 S32: -0.0432 S33: -0.0774 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 127 A 164 REMARK 3 ORIGIN FOR THE GROUP (A): 18.8176 1.3799 -27.6026 REMARK 3 T TENSOR REMARK 3 T11: 0.0432 T22: 0.1553 REMARK 3 T33: 0.0940 T12: -0.0551 REMARK 3 T13: -0.0304 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 0.2908 L22: 1.3726 REMARK 3 L33: 3.3186 L12: 0.3592 REMARK 3 L13: -0.9481 L23: -1.5586 REMARK 3 S TENSOR REMARK 3 S11: -0.0589 S12: -0.0301 S13: 0.1037 REMARK 3 S21: -0.1863 S22: 0.3117 S23: 0.0467 REMARK 3 S31: 0.2010 S32: -0.0135 S33: -0.2527 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 303 A 303 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1715 -0.4892 -15.2607 REMARK 3 T TENSOR REMARK 3 T11: 0.0378 T22: 0.0633 REMARK 3 T33: 0.1065 T12: 0.0129 REMARK 3 T13: 0.0120 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.3266 L22: 2.1823 REMARK 3 L33: 3.5159 L12: -0.5684 REMARK 3 L13: -1.0558 L23: 1.6424 REMARK 3 S TENSOR REMARK 3 S11: 0.0227 S12: -0.0195 S13: -0.0365 REMARK 3 S21: -0.0566 S22: -0.0574 S23: 0.0452 REMARK 3 S31: -0.1377 S32: 0.0612 S33: 0.0347 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5X6I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1300002702. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96400 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13718 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.0800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1P3J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40MM CHLORIDE, 36% POLYETHYLENE GLYCOL REMARK 280 1500, 50MM CHES PH 9.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.86950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.29750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.09000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.29750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.86950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 22.09000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 213 REMARK 465 GLY A 214 REMARK 465 LEU A 215 REMARK 465 LYS A 216 REMARK 465 LYS A 217 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 88 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 88 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 105 78.97 -153.48 REMARK 500 ASN A 142 71.12 -160.78 REMARK 500 ASP A 163 31.78 -89.64 REMARK 500 GLN A 198 64.69 -100.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 41 O REMARK 620 2 GLN A 199 OE1 37.2 REMARK 620 3 HOH A 404 O 80.2 97.8 REMARK 620 4 HOH A 428 O 156.1 124.1 122.7 REMARK 620 5 HOH A 456 O 81.2 70.3 160.4 76.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 305 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 116 OD1 REMARK 620 2 ASP A 118 OD2 115.5 REMARK 620 3 GLU A 188 OE1 65.2 140.1 REMARK 620 4 GLU A 188 OE2 63.9 139.0 1.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 130 SG REMARK 620 2 CYS A 133 SG 109.6 REMARK 620 3 CYS A 150 SG 105.0 115.2 REMARK 620 4 ASP A 153 OD2 107.6 100.1 119.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 AP5 A 303 O2B REMARK 620 2 AP5 A 303 O2G 79.3 REMARK 620 3 HOH A 437 O 103.5 168.5 REMARK 620 4 HOH A 440 O 79.5 95.1 96.4 REMARK 620 5 HOH A 445 O 153.7 82.5 90.9 121.1 REMARK 620 6 HOH A 474 O 80.6 83.8 85.6 160.0 78.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AP5 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5X6J RELATED DB: PDB REMARK 900 RELATED ID: 5X6K RELATED DB: PDB REMARK 900 RELATED ID: 5X6L RELATED DB: PDB DBREF1 5X6I A 1 217 UNP A0A063X902_BACIU DBREF2 5X6I A A0A063X902 1 217 SEQADV 5X6I THR A 26 UNP A0A063X90 ILE 26 ENGINEERED MUTATION SEQRES 1 A 217 MET ASN LEU VAL LEU MET GLY LEU PRO GLY ALA GLY LYS SEQRES 2 A 217 GLY THR GLN GLY GLU ARG ILE VAL GLU ASP TYR GLY THR SEQRES 3 A 217 PRO HIS ILE SER THR GLY ASP MET PHE ARG ALA ALA MET SEQRES 4 A 217 LYS GLU GLU THR PRO LEU GLY LEU GLU ALA LYS SER TYR SEQRES 5 A 217 ILE ASP LYS GLY GLU LEU VAL PRO ASP GLU VAL THR ILE SEQRES 6 A 217 GLY ILE VAL LYS GLU ARG LEU GLY LYS ASP ASP CYS GLU SEQRES 7 A 217 ARG GLY PHE LEU LEU ASP GLY PHE PRO ARG THR VAL ALA SEQRES 8 A 217 GLN ALA GLU ALA LEU GLU GLU ILE LEU GLU GLU TYR GLY SEQRES 9 A 217 LYS PRO ILE ASP TYR VAL ILE ASN ILE GLU VAL ASP LYS SEQRES 10 A 217 ASP VAL LEU MET GLU ARG LEU THR GLY ARG ARG ILE CYS SEQRES 11 A 217 SER VAL CYS GLY THR THR TYR HIS LEU VAL PHE ASN PRO SEQRES 12 A 217 PRO LYS THR PRO GLY ILE CYS ASP LYS ASP GLY GLY GLU SEQRES 13 A 217 LEU TYR GLN ARG ALA ASP ASP ASN GLU GLU THR VAL SER SEQRES 14 A 217 LYS ARG LEU GLU VAL ASN MET LYS GLN THR GLN PRO LEU SEQRES 15 A 217 LEU ASP PHE TYR SER GLU LYS GLY TYR LEU ALA ASN VAL SEQRES 16 A 217 ASN GLY GLN GLN ASP ILE GLN ASP VAL TYR ALA ASP VAL SEQRES 17 A 217 LYS ASP LEU LEU GLY GLY LEU LYS LYS HET ZN A 301 1 HET MG A 302 1 HET AP5 A 303 57 HET CA A 304 1 HET CA A 305 1 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM AP5 BIS(ADENOSINE)-5'-PENTAPHOSPHATE HETNAM CA CALCIUM ION FORMUL 2 ZN ZN 2+ FORMUL 3 MG MG 2+ FORMUL 4 AP5 C20 H29 N10 O22 P5 FORMUL 5 CA 2(CA 2+) FORMUL 7 HOH *104(H2 O) HELIX 1 AA1 GLY A 12 GLY A 25 1 14 HELIX 2 AA2 THR A 31 GLU A 42 1 12 HELIX 3 AA3 THR A 43 GLY A 56 1 14 HELIX 4 AA4 PRO A 60 LYS A 74 1 15 HELIX 5 AA5 ASP A 75 GLU A 78 5 4 HELIX 6 AA6 THR A 89 TYR A 103 1 15 HELIX 7 AA7 ASP A 116 ASP A 118 5 3 HELIX 8 AA8 VAL A 119 GLY A 126 1 8 HELIX 9 AA9 ASN A 164 LYS A 189 1 26 HELIX 10 AB1 ASP A 200 LEU A 212 1 13 SHEET 1 AA1 5 HIS A 28 SER A 30 0 SHEET 2 AA1 5 PHE A 81 ASP A 84 1 O LEU A 82 N ILE A 29 SHEET 3 AA1 5 ASN A 2 MET A 6 1 N LEU A 5 O LEU A 83 SHEET 4 AA1 5 TYR A 109 GLU A 114 1 O ILE A 111 N VAL A 4 SHEET 5 AA1 5 LEU A 192 ASN A 196 1 O VAL A 195 N ASN A 112 SHEET 1 AA2 3 THR A 136 HIS A 138 0 SHEET 2 AA2 3 ARG A 127 CYS A 130 -1 N ARG A 128 O TYR A 137 SHEET 3 AA2 3 LEU A 157 TYR A 158 -1 O TYR A 158 N ILE A 129 LINK O GLU A 41 CA CA A 304 1555 1555 2.26 LINK OD1 ASP A 116 CA CA A 305 1555 1555 2.30 LINK OD2 ASP A 118 CA CA A 305 1555 1555 2.22 LINK SG CYS A 130 ZN ZN A 301 1555 1555 2.45 LINK SG CYS A 133 ZN ZN A 301 1555 1555 2.41 LINK SG CYS A 150 ZN ZN A 301 1555 1555 2.25 LINK OD2 ASP A 153 ZN ZN A 301 1555 1555 2.35 LINK OE1 GLU A 188 CA CA A 305 1555 4445 2.63 LINK OE2 GLU A 188 CA CA A 305 1555 4445 2.69 LINK OE1 GLN A 199 CA CA A 304 1555 1545 2.41 LINK MG MG A 302 O2B AP5 A 303 1555 1555 2.42 LINK MG MG A 302 O2G AP5 A 303 1555 1555 2.31 LINK MG MG A 302 O HOH A 437 1555 1555 2.13 LINK MG MG A 302 O HOH A 440 1555 1555 2.31 LINK MG MG A 302 O HOH A 445 1555 1555 2.24 LINK MG MG A 302 O HOH A 474 1555 1555 2.12 LINK CA CA A 304 O HOH A 404 1555 1565 2.36 LINK CA CA A 304 O HOH A 428 1555 1565 2.51 LINK CA CA A 304 O HOH A 456 1555 1555 2.04 CISPEP 1 PHE A 86 PRO A 87 0 -3.22 SITE 1 AC1 4 CYS A 130 CYS A 133 CYS A 150 ASP A 153 SITE 1 AC2 5 AP5 A 303 HOH A 437 HOH A 440 HOH A 445 SITE 2 AC2 5 HOH A 474 SITE 1 AC3 40 PRO A 9 GLY A 10 ALA A 11 GLY A 12 SITE 2 AC3 40 LYS A 13 GLY A 14 THR A 15 THR A 31 SITE 3 AC3 40 GLY A 32 ARG A 36 ILE A 53 GLU A 57 SITE 4 AC3 40 VAL A 59 THR A 64 GLY A 85 PHE A 86 SITE 5 AC3 40 ARG A 88 GLN A 92 ARG A 123 ARG A 127 SITE 6 AC3 40 THR A 136 TYR A 137 HIS A 138 PHE A 141 SITE 7 AC3 40 ARG A 160 ARG A 171 GLY A 197 GLN A 199 SITE 8 AC3 40 ILE A 201 MG A 302 HOH A 413 HOH A 439 SITE 9 AC3 40 HOH A 440 HOH A 443 HOH A 445 HOH A 446 SITE 10 AC3 40 HOH A 453 HOH A 462 HOH A 471 HOH A 474 SITE 1 AC4 6 GLU A 41 GLN A 199 ASP A 207 HOH A 404 SITE 2 AC4 6 HOH A 428 HOH A 456 SITE 1 AC5 3 ASP A 116 ASP A 118 GLU A 188 CRYST1 43.739 44.180 100.595 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022863 0.000000 0.000000 0.00000 SCALE2 0.000000 0.022635 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009941 0.00000