HEADER TRANSFERASE 22-FEB-17 5X6J TITLE CRYSTAL STRUCTURE OF B. GLOBISPORUS ADENYLATE KINASE VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLATE KINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: T26I; COMPND 5 SYNONYM: AK,ATP-AMP TRANSPHOSPHORYLASE,ATP:AMP PHOSPHOTRANSFERASE, COMPND 6 ADENYLATE MONOPHOSPHATE KINASE; COMPND 7 EC: 2.7.4.3; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPOROSARCINA GLOBISPORA; SOURCE 3 ORGANISM_TAXID: 1459; SOURCE 4 GENE: ADK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ATP BINDING, PHOSPHOTRANSFERASE ACTIVITY, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MOON,E.BAE REVDAT 3 22-NOV-23 5X6J 1 REMARK REVDAT 2 11-SEP-19 5X6J 1 JRNL REVDAT 1 28-FEB-18 5X6J 0 JRNL AUTH S.MOON,J.KIM,J.KOO,E.BAE JRNL TITL STRUCTURAL AND MUTATIONAL ANALYSES OF PSYCHROPHILIC AND JRNL TITL 2 MESOPHILIC ADENYLATE KINASES HIGHLIGHT THE ROLE OF JRNL TITL 3 HYDROPHOBIC INTERACTIONS IN PROTEIN THERMAL STABILITY. JRNL REF STRUCT DYN. V. 6 24702 2019 JRNL REFN ESSN 2329-7778 JRNL PMID 31111079 JRNL DOI 10.1063/1.5089707 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 13143 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 683 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 951 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1648 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 89 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.16000 REMARK 3 B22 (A**2) : -0.16000 REMARK 3 B33 (A**2) : 0.53000 REMARK 3 B12 (A**2) : -0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.227 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.219 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.164 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.546 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1732 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1662 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2350 ; 2.043 ; 2.024 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3832 ; 0.881 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 212 ; 6.077 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;36.414 ;25.443 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 309 ;15.244 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;16.465 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 265 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1927 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 364 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 851 ; 3.244 ; 3.796 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 850 ; 3.235 ; 3.793 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1062 ; 4.299 ; 5.671 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1063 ; 4.299 ; 5.675 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 881 ; 3.840 ; 4.143 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 882 ; 3.838 ; 4.143 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1289 ; 5.698 ; 6.052 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2023 ; 7.312 ;30.562 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1995 ; 7.313 ;30.390 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 30 REMARK 3 RESIDUE RANGE : A 61 A 126 REMARK 3 RESIDUE RANGE : A 165 A 213 REMARK 3 ORIGIN FOR THE GROUP (A): -13.7413 12.3222 -5.3963 REMARK 3 T TENSOR REMARK 3 T11: 0.1076 T22: 0.0684 REMARK 3 T33: 0.0558 T12: -0.0128 REMARK 3 T13: 0.0137 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.5291 L22: 1.2161 REMARK 3 L33: 2.0315 L12: -0.3156 REMARK 3 L13: -0.1592 L23: 0.5089 REMARK 3 S TENSOR REMARK 3 S11: 0.0448 S12: 0.0273 S13: 0.1664 REMARK 3 S21: 0.1780 S22: 0.0135 S23: -0.1290 REMARK 3 S31: 0.3203 S32: 0.1608 S33: -0.0583 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 60 REMARK 3 ORIGIN FOR THE GROUP (A): -20.3896 23.8746 -18.2612 REMARK 3 T TENSOR REMARK 3 T11: 0.0990 T22: 0.0527 REMARK 3 T33: 0.0381 T12: -0.0283 REMARK 3 T13: -0.0044 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 1.6923 L22: 3.3700 REMARK 3 L33: 2.0870 L12: 0.4344 REMARK 3 L13: 1.2905 L23: -0.1956 REMARK 3 S TENSOR REMARK 3 S11: -0.1145 S12: 0.0960 S13: 0.1647 REMARK 3 S21: -0.1265 S22: 0.0006 S23: -0.1457 REMARK 3 S31: -0.1962 S32: -0.0729 S33: 0.1138 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 127 A 164 REMARK 3 ORIGIN FOR THE GROUP (A): -25.1434 28.8260 1.5032 REMARK 3 T TENSOR REMARK 3 T11: 0.0959 T22: 0.0949 REMARK 3 T33: 0.0278 T12: -0.0604 REMARK 3 T13: 0.0402 T23: -0.0172 REMARK 3 L TENSOR REMARK 3 L11: 0.2988 L22: 1.6424 REMARK 3 L33: 2.1028 L12: -0.3489 REMARK 3 L13: 0.0329 L23: 1.5695 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: 0.0501 S13: 0.0099 REMARK 3 S21: 0.0436 S22: -0.1518 S23: 0.0801 REMARK 3 S31: 0.0064 S32: -0.1566 S33: 0.1410 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5X6J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1300002708. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13990 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 21.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 53.9800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.90 REMARK 200 R MERGE FOR SHELL (I) : 0.50800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1S3G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5M AMMONIUM SULFATE, 1% POLYETHYLENE REMARK 280 GLYCOL 1000, 0.1% SODIUM AZIDE, 50MM HEPES PH 7.0, BATCH MODE, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.52167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.04333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.04333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.52167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 214 REMARK 465 ASN A 215 REMARK 465 GLY A 216 REMARK 465 GLN A 217 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 24 OD1 ASP A 209 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 88 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 142 63.46 -159.55 REMARK 500 GLN A 198 59.79 -93.28 REMARK 500 LYS A 199 -167.11 -163.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 130 SG REMARK 620 2 CYS A 133 SG 111.2 REMARK 620 3 CYS A 150 SG 106.9 114.2 REMARK 620 4 ASP A 153 OD2 122.2 95.9 106.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AP5 A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5X6I RELATED DB: PDB REMARK 900 RELATED ID: 5X6K RELATED DB: PDB REMARK 900 RELATED ID: 5X6L RELATED DB: PDB DBREF 5X6J A 1 217 UNP P84139 KAD_SPOGL 1 217 SEQADV 5X6J ILE A 26 UNP P84139 THR 26 ENGINEERED MUTATION SEQRES 1 A 217 MET ASN ILE VAL LEU MET GLY LEU PRO GLY ALA GLY LYS SEQRES 2 A 217 GLY THR GLN ALA ASP ARG ILE VAL GLU LYS TYR GLY ILE SEQRES 3 A 217 PRO HIS ILE SER THR GLY ASP MET PHE ARG ALA ALA ILE SEQRES 4 A 217 GLN GLU GLY THR GLU LEU GLY VAL LYS ALA LYS SER PHE SEQRES 5 A 217 MET ASP GLN GLY ALA LEU VAL PRO ASP GLU VAL THR ILE SEQRES 6 A 217 GLY ILE VAL ARG GLU ARG LEU SER LYS SER ASP CYS ASP SEQRES 7 A 217 ASN GLY PHE LEU LEU ASP GLY PHE PRO ARG THR VAL PRO SEQRES 8 A 217 GLN ALA GLU ALA LEU ASP GLN LEU LEU ALA ASP MET GLY SEQRES 9 A 217 ARG LYS ILE GLU HIS VAL LEU ASN ILE GLN VAL GLU LYS SEQRES 10 A 217 GLU GLU LEU ILE ALA ARG LEU THR GLY ARG ARG ILE CYS SEQRES 11 A 217 LYS VAL CYS GLY THR SER TYR HIS LEU LEU PHE ASN PRO SEQRES 12 A 217 PRO GLN VAL GLU GLY LYS CYS ASP LYS ASP GLY GLY GLU SEQRES 13 A 217 LEU TYR GLN ARG ALA ASP ASP ASN PRO ASP THR VAL THR SEQRES 14 A 217 ASN ARG LEU GLU VAL ASN MET ASN GLN THR ALA PRO LEU SEQRES 15 A 217 LEU ALA PHE TYR ASP SER LYS GLU VAL LEU VAL ASN ILE SEQRES 16 A 217 ASN GLY GLN LYS ASP ILE LYS ASP VAL PHE LYS ASP LEU SEQRES 17 A 217 ASP VAL ILE LEU GLN GLY ASN GLY GLN HET ZN A 301 1 HET AP5 A 302 57 HETNAM ZN ZINC ION HETNAM AP5 BIS(ADENOSINE)-5'-PENTAPHOSPHATE FORMUL 2 ZN ZN 2+ FORMUL 3 AP5 C20 H29 N10 O22 P5 FORMUL 4 HOH *89(H2 O) HELIX 1 AA1 GLY A 12 GLY A 25 1 14 HELIX 2 AA2 THR A 31 GLY A 42 1 12 HELIX 3 AA3 THR A 43 GLY A 56 1 14 HELIX 4 AA4 PRO A 60 LYS A 74 1 15 HELIX 5 AA5 SER A 75 ASP A 78 5 4 HELIX 6 AA6 THR A 89 ASP A 102 1 14 HELIX 7 AA7 GLU A 116 LEU A 124 1 9 HELIX 8 AA8 ASN A 164 GLN A 178 1 15 HELIX 9 AA9 GLN A 178 SER A 188 1 11 HELIX 10 AB1 ASP A 200 GLN A 213 1 14 SHEET 1 AA1 5 HIS A 28 SER A 30 0 SHEET 2 AA1 5 PHE A 81 ASP A 84 1 O LEU A 82 N ILE A 29 SHEET 3 AA1 5 ASN A 2 GLY A 7 1 N ILE A 3 O PHE A 81 SHEET 4 AA1 5 HIS A 109 GLN A 114 1 O LEU A 111 N VAL A 4 SHEET 5 AA1 5 LEU A 192 ASN A 196 1 O ILE A 195 N GLN A 114 SHEET 1 AA2 3 SER A 136 HIS A 138 0 SHEET 2 AA2 3 ARG A 127 CYS A 130 -1 N ARG A 128 O TYR A 137 SHEET 3 AA2 3 LEU A 157 TYR A 158 -1 O TYR A 158 N ILE A 129 LINK SG CYS A 130 ZN ZN A 301 1555 1555 2.22 LINK SG CYS A 133 ZN ZN A 301 1555 1555 2.33 LINK SG CYS A 150 ZN ZN A 301 1555 1555 2.39 LINK OD2 ASP A 153 ZN ZN A 301 1555 1555 2.33 CISPEP 1 PHE A 86 PRO A 87 0 -2.61 SITE 1 AC1 4 CYS A 130 CYS A 133 CYS A 150 ASP A 153 SITE 1 AC2 39 PRO A 9 GLY A 10 ALA A 11 GLY A 12 SITE 2 AC2 39 LYS A 13 GLY A 14 THR A 15 THR A 31 SITE 3 AC2 39 GLY A 32 PHE A 35 ARG A 36 MET A 53 SITE 4 AC2 39 ALA A 57 VAL A 59 THR A 64 GLY A 85 SITE 5 AC2 39 PHE A 86 ARG A 88 GLN A 92 ARG A 123 SITE 6 AC2 39 ARG A 127 SER A 136 TYR A 137 HIS A 138 SITE 7 AC2 39 PHE A 141 ARG A 160 ARG A 171 GLY A 197 SITE 8 AC2 39 LYS A 199 ILE A 201 HOH A 406 HOH A 409 SITE 9 AC2 39 HOH A 411 HOH A 413 HOH A 415 HOH A 419 SITE 10 AC2 39 HOH A 421 HOH A 425 HOH A 446 CRYST1 65.106 65.106 94.565 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015360 0.008868 0.000000 0.00000 SCALE2 0.000000 0.017736 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010575 0.00000