HEADER OXIDOREDUCTASE 23-FEB-17 5X6R TITLE CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE KMO IN COMPLEX WITH RO TITLE 2 61-8048 COMPND MOL_ID: 1; COMPND 2 MOLECULE: KYNURENINE 3-MONOOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-394; COMPND 5 SYNONYM: BIOSYNTHESIS OF NICOTINIC ACID PROTEIN 4,KYNURENINE 3- COMPND 6 HYDROXYLASE; COMPND 7 EC: 1.14.13.9; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: BNA4, YBL098W, YBL0828; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 9 PPPARG4; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 1182032 KEYWDS MONOOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.T.KIM,K.Y.HWANG REVDAT 4 22-NOV-23 5X6R 1 REMARK REVDAT 3 02-MAY-18 5X6R 1 JRNL REVDAT 2 28-FEB-18 5X6R 1 JRNL REVDAT 1 21-FEB-18 5X6R 0 JRNL AUTH H.T.KIM,B.K.NA,J.CHUNG,S.KIM,S.K.KWON,H.CHA,J.SON,J.M.CHO, JRNL AUTH 2 K.Y.HWANG JRNL TITL STRUCTURAL BASIS FOR INHIBITOR-INDUCED HYDROGEN PEROXIDE JRNL TITL 2 PRODUCTION BY KYNURENINE 3-MONOOXYGENASE JRNL REF CELL CHEM BIOL V. 25 426 2018 JRNL REFN ESSN 2451-9448 JRNL PMID 29429898 JRNL DOI 10.1016/J.CHEMBIOL.2018.01.008 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 72243 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.760 REMARK 3 FREE R VALUE TEST SET COUNT : 1993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.8012 - 4.6016 0.95 4908 137 0.1737 0.2186 REMARK 3 2 4.6016 - 3.6543 0.99 5057 139 0.1661 0.2199 REMARK 3 3 3.6543 - 3.1929 0.96 4868 131 0.2029 0.2644 REMARK 3 4 3.1929 - 2.9012 1.00 5052 145 0.2214 0.2595 REMARK 3 5 2.9012 - 2.6934 1.00 5068 135 0.2313 0.2502 REMARK 3 6 2.6934 - 2.5347 1.00 5057 153 0.2317 0.2744 REMARK 3 7 2.5347 - 2.4078 1.00 5050 152 0.2327 0.2756 REMARK 3 8 2.4078 - 2.3030 1.00 5047 140 0.2598 0.3325 REMARK 3 9 2.3030 - 2.2144 1.00 5071 137 0.2554 0.3128 REMARK 3 10 2.2144 - 2.1380 1.00 5011 153 0.2679 0.3208 REMARK 3 11 2.1380 - 2.0712 1.00 5058 135 0.2539 0.2911 REMARK 3 12 2.0712 - 2.0120 1.00 5076 141 0.2707 0.3153 REMARK 3 13 2.0120 - 1.9590 1.00 5003 134 0.3150 0.3666 REMARK 3 14 1.9590 - 1.9112 0.98 4924 161 0.3636 0.3965 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6176 REMARK 3 ANGLE : 1.137 8348 REMARK 3 CHIRALITY : 0.049 900 REMARK 3 PLANARITY : 0.005 1131 REMARK 3 DIHEDRAL : 14.980 2355 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5X6R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1300003010. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72243 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 30.797 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.40500 REMARK 200 R SYM FOR SHELL (I) : 0.36400 REMARK 200 FOR SHELL : 4.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4J33 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, PH 4.6, 0.1 M REMARK 280 NACL, AND 12% ISOPROPANOL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.88200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -25 REMARK 465 ARG A -24 REMARK 465 GLY A -23 REMARK 465 SER A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 ASP A -15 REMARK 465 TYR A -14 REMARK 465 ASP A -13 REMARK 465 ILE A -12 REMARK 465 PRO A -11 REMARK 465 THR A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 THR A 42 REMARK 465 LYS A 43 REMARK 465 ASN A 44 REMARK 465 LYS A 45 REMARK 465 ASN A 46 REMARK 465 GLY A 98 REMARK 465 LEU A 99 REMARK 465 HIS A 100 REMARK 465 GLY A 101 REMARK 465 GLU A 102 REMARK 465 ALA A 103 REMARK 465 GLY A 150 REMARK 465 GLU A 151 REMARK 465 ASP A 152 REMARK 465 LEU A 153 REMARK 465 LYS A 154 REMARK 465 LYS A 391 REMARK 465 LEU A 392 REMARK 465 ASP A 393 REMARK 465 ALA A 394 REMARK 465 MET B -25 REMARK 465 ARG B -24 REMARK 465 GLY B -23 REMARK 465 SER B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 ASP B -15 REMARK 465 TYR B -14 REMARK 465 ASP B -13 REMARK 465 ILE B -12 REMARK 465 PRO B -11 REMARK 465 THR B -10 REMARK 465 THR B -9 REMARK 465 GLU B -8 REMARK 465 ASN B -7 REMARK 465 LEU B -6 REMARK 465 TYR B -5 REMARK 465 TYR B -4 REMARK 465 PHE B -3 REMARK 465 GLN B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASP B 40 REMARK 465 THR B 41 REMARK 465 THR B 42 REMARK 465 LYS B 43 REMARK 465 ASN B 44 REMARK 465 LYS B 45 REMARK 465 ASN B 46 REMARK 465 ALA B 148 REMARK 465 ILE B 149 REMARK 465 GLY B 150 REMARK 465 GLU B 151 REMARK 465 ASP B 152 REMARK 465 LEU B 153 REMARK 465 LYS B 154 REMARK 465 THR B 155 REMARK 465 PRO B 156 REMARK 465 ASP B 380 REMARK 465 VAL B 381 REMARK 465 THR B 382 REMARK 465 SER B 383 REMARK 465 LYS B 384 REMARK 465 ARG B 385 REMARK 465 PHE B 386 REMARK 465 LEU B 387 REMARK 465 LEU B 388 REMARK 465 ARG B 389 REMARK 465 LYS B 390 REMARK 465 LYS B 391 REMARK 465 LEU B 392 REMARK 465 ASP B 393 REMARK 465 ALA B 394 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 368 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 580 O HOH A 651 2.09 REMARK 500 NH1 ARG A 57 O HOH A 501 2.10 REMARK 500 NH2 ARG B 263 O HOH B 501 2.13 REMARK 500 OD1 ASN A 192 O HOH A 502 2.14 REMARK 500 O HOH A 627 O HOH A 681 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 624 O HOH B 501 1656 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 141 -97.34 -114.79 REMARK 500 SER A 172 111.46 -24.72 REMARK 500 HIS A 317 54.38 -157.31 REMARK 500 PHE A 322 -55.26 68.67 REMARK 500 SER A 378 -31.32 -138.40 REMARK 500 ASP B 141 -78.83 -125.10 REMARK 500 SER B 172 110.20 -3.78 REMARK 500 HIS B 317 42.07 -152.33 REMARK 500 PHE B 322 -48.34 65.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7ZR A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7ZR B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5X68 RELATED DB: PDB REMARK 900 RELATED ID: 5X6P RELATED DB: PDB REMARK 900 RELATED ID: 5X6Q RELATED DB: PDB DBREF 5X6R A 1 394 UNP P38169 KMO_YEAST 1 394 DBREF 5X6R B 1 394 UNP P38169 KMO_YEAST 1 394 SEQADV 5X6R MET A -25 UNP P38169 EXPRESSION TAG SEQADV 5X6R ARG A -24 UNP P38169 EXPRESSION TAG SEQADV 5X6R GLY A -23 UNP P38169 EXPRESSION TAG SEQADV 5X6R SER A -22 UNP P38169 EXPRESSION TAG SEQADV 5X6R HIS A -21 UNP P38169 EXPRESSION TAG SEQADV 5X6R HIS A -20 UNP P38169 EXPRESSION TAG SEQADV 5X6R HIS A -19 UNP P38169 EXPRESSION TAG SEQADV 5X6R HIS A -18 UNP P38169 EXPRESSION TAG SEQADV 5X6R HIS A -17 UNP P38169 EXPRESSION TAG SEQADV 5X6R HIS A -16 UNP P38169 EXPRESSION TAG SEQADV 5X6R ASP A -15 UNP P38169 EXPRESSION TAG SEQADV 5X6R TYR A -14 UNP P38169 EXPRESSION TAG SEQADV 5X6R ASP A -13 UNP P38169 EXPRESSION TAG SEQADV 5X6R ILE A -12 UNP P38169 EXPRESSION TAG SEQADV 5X6R PRO A -11 UNP P38169 EXPRESSION TAG SEQADV 5X6R THR A -10 UNP P38169 EXPRESSION TAG SEQADV 5X6R THR A -9 UNP P38169 EXPRESSION TAG SEQADV 5X6R GLU A -8 UNP P38169 EXPRESSION TAG SEQADV 5X6R ASN A -7 UNP P38169 EXPRESSION TAG SEQADV 5X6R LEU A -6 UNP P38169 EXPRESSION TAG SEQADV 5X6R TYR A -5 UNP P38169 EXPRESSION TAG SEQADV 5X6R TYR A -4 UNP P38169 EXPRESSION TAG SEQADV 5X6R PHE A -3 UNP P38169 EXPRESSION TAG SEQADV 5X6R GLN A -2 UNP P38169 EXPRESSION TAG SEQADV 5X6R GLY A -1 UNP P38169 EXPRESSION TAG SEQADV 5X6R SER A 0 UNP P38169 EXPRESSION TAG SEQADV 5X6R MET B -25 UNP P38169 EXPRESSION TAG SEQADV 5X6R ARG B -24 UNP P38169 EXPRESSION TAG SEQADV 5X6R GLY B -23 UNP P38169 EXPRESSION TAG SEQADV 5X6R SER B -22 UNP P38169 EXPRESSION TAG SEQADV 5X6R HIS B -21 UNP P38169 EXPRESSION TAG SEQADV 5X6R HIS B -20 UNP P38169 EXPRESSION TAG SEQADV 5X6R HIS B -19 UNP P38169 EXPRESSION TAG SEQADV 5X6R HIS B -18 UNP P38169 EXPRESSION TAG SEQADV 5X6R HIS B -17 UNP P38169 EXPRESSION TAG SEQADV 5X6R HIS B -16 UNP P38169 EXPRESSION TAG SEQADV 5X6R ASP B -15 UNP P38169 EXPRESSION TAG SEQADV 5X6R TYR B -14 UNP P38169 EXPRESSION TAG SEQADV 5X6R ASP B -13 UNP P38169 EXPRESSION TAG SEQADV 5X6R ILE B -12 UNP P38169 EXPRESSION TAG SEQADV 5X6R PRO B -11 UNP P38169 EXPRESSION TAG SEQADV 5X6R THR B -10 UNP P38169 EXPRESSION TAG SEQADV 5X6R THR B -9 UNP P38169 EXPRESSION TAG SEQADV 5X6R GLU B -8 UNP P38169 EXPRESSION TAG SEQADV 5X6R ASN B -7 UNP P38169 EXPRESSION TAG SEQADV 5X6R LEU B -6 UNP P38169 EXPRESSION TAG SEQADV 5X6R TYR B -5 UNP P38169 EXPRESSION TAG SEQADV 5X6R TYR B -4 UNP P38169 EXPRESSION TAG SEQADV 5X6R PHE B -3 UNP P38169 EXPRESSION TAG SEQADV 5X6R GLN B -2 UNP P38169 EXPRESSION TAG SEQADV 5X6R GLY B -1 UNP P38169 EXPRESSION TAG SEQADV 5X6R SER B 0 UNP P38169 EXPRESSION TAG SEQRES 1 A 420 MET ARG GLY SER HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 A 420 ILE PRO THR THR GLU ASN LEU TYR TYR PHE GLN GLY SER SEQRES 3 A 420 MET SER GLU SER VAL ALA ILE ILE GLY ALA GLY LEU VAL SEQRES 4 A 420 GLY CYS LEU ALA ALA LEU ALA PHE SER LYS GLU GLY TYR SEQRES 5 A 420 ASN VAL THR LEU TYR ASP PHE ARG GLN ASP PRO ARG LEU SEQRES 6 A 420 ASP THR THR LYS ASN LYS ASN LEU LYS SER ILE ASN LEU SEQRES 7 A 420 ALA ILE SER ALA ARG GLY ILE ASP ALA LEU LYS SER ILE SEQRES 8 A 420 ASP PRO ASP ALA CYS GLU HIS ILE LEU GLN ASP MET ILE SEQRES 9 A 420 PRO MET LYS GLY ARG MET ILE HIS ASP LEU LYS GLY ARG SEQRES 10 A 420 GLN GLU SER GLN LEU TYR GLY LEU HIS GLY GLU ALA ILE SEQRES 11 A 420 ASN SER ILE ASN ARG SER VAL LEU ASN ASN SER LEU LEU SEQRES 12 A 420 ASP GLU LEU GLU LYS SER THR THR GLU LEU LYS PHE GLY SEQRES 13 A 420 HIS LYS LEU VAL LYS ILE GLU TRP THR ASP ASP LYS GLN SEQRES 14 A 420 ILE CYS HIS PHE ALA ILE GLY GLU ASP LEU LYS THR PRO SEQRES 15 A 420 HIS THR GLU LYS TYR ASP PHE VAL ILE GLY CYS ASP GLY SEQRES 16 A 420 ALA TYR SER ALA THR ARG SER GLN MET GLN ARG LYS VAL SEQRES 17 A 420 GLU MET ASP PHE SER GLN GLU TYR MET ASN LEU ARG TYR SEQRES 18 A 420 ILE GLU LEU TYR ILE PRO PRO THR GLU GLU PHE LYS PRO SEQRES 19 A 420 ASN TYR GLY GLY ASN PHE ALA ILE ALA PRO ASP HIS LEU SEQRES 20 A 420 HIS ILE TRP PRO ARG HIS LYS PHE MET LEU ILE ALA LEU SEQRES 21 A 420 ALA ASN SER ASP GLY SER PHE THR SER THR PHE PHE GLY SEQRES 22 A 420 SER LYS ASP GLN ILE SER ASP LEU ILE THR SER LYS SER SEQRES 23 A 420 ARG VAL ARG GLU PHE LEU ILE GLU ASN PHE PRO ASP ILE SEQRES 24 A 420 ILE ASN ILE MET ASP LEU ASP ASP ALA VAL LYS ARG PHE SEQRES 25 A 420 ILE THR TYR PRO LYS GLU SER LEU VAL CYS VAL ASN CYS SEQRES 26 A 420 LYS PRO TYR ASP VAL PRO GLY GLY LYS ALA ILE LEU LEU SEQRES 27 A 420 GLY ASP ALA ALA HIS ALA MET VAL PRO PHE TYR GLY GLN SEQRES 28 A 420 GLY MET ASN CYS GLY PHE GLU ASP VAL ARG ILE LEU MET SEQRES 29 A 420 ALA LEU LEU LYS LYS HIS SER GLY ASP ARG SER ARG ALA SEQRES 30 A 420 PHE THR GLU TYR THR GLN THR ARG HIS LYS ASP LEU VAL SEQRES 31 A 420 SER ILE THR GLU LEU ALA LYS ARG ASN TYR LYS GLU MET SEQRES 32 A 420 SER HIS ASP VAL THR SER LYS ARG PHE LEU LEU ARG LYS SEQRES 33 A 420 LYS LEU ASP ALA SEQRES 1 B 420 MET ARG GLY SER HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 B 420 ILE PRO THR THR GLU ASN LEU TYR TYR PHE GLN GLY SER SEQRES 3 B 420 MET SER GLU SER VAL ALA ILE ILE GLY ALA GLY LEU VAL SEQRES 4 B 420 GLY CYS LEU ALA ALA LEU ALA PHE SER LYS GLU GLY TYR SEQRES 5 B 420 ASN VAL THR LEU TYR ASP PHE ARG GLN ASP PRO ARG LEU SEQRES 6 B 420 ASP THR THR LYS ASN LYS ASN LEU LYS SER ILE ASN LEU SEQRES 7 B 420 ALA ILE SER ALA ARG GLY ILE ASP ALA LEU LYS SER ILE SEQRES 8 B 420 ASP PRO ASP ALA CYS GLU HIS ILE LEU GLN ASP MET ILE SEQRES 9 B 420 PRO MET LYS GLY ARG MET ILE HIS ASP LEU LYS GLY ARG SEQRES 10 B 420 GLN GLU SER GLN LEU TYR GLY LEU HIS GLY GLU ALA ILE SEQRES 11 B 420 ASN SER ILE ASN ARG SER VAL LEU ASN ASN SER LEU LEU SEQRES 12 B 420 ASP GLU LEU GLU LYS SER THR THR GLU LEU LYS PHE GLY SEQRES 13 B 420 HIS LYS LEU VAL LYS ILE GLU TRP THR ASP ASP LYS GLN SEQRES 14 B 420 ILE CYS HIS PHE ALA ILE GLY GLU ASP LEU LYS THR PRO SEQRES 15 B 420 HIS THR GLU LYS TYR ASP PHE VAL ILE GLY CYS ASP GLY SEQRES 16 B 420 ALA TYR SER ALA THR ARG SER GLN MET GLN ARG LYS VAL SEQRES 17 B 420 GLU MET ASP PHE SER GLN GLU TYR MET ASN LEU ARG TYR SEQRES 18 B 420 ILE GLU LEU TYR ILE PRO PRO THR GLU GLU PHE LYS PRO SEQRES 19 B 420 ASN TYR GLY GLY ASN PHE ALA ILE ALA PRO ASP HIS LEU SEQRES 20 B 420 HIS ILE TRP PRO ARG HIS LYS PHE MET LEU ILE ALA LEU SEQRES 21 B 420 ALA ASN SER ASP GLY SER PHE THR SER THR PHE PHE GLY SEQRES 22 B 420 SER LYS ASP GLN ILE SER ASP LEU ILE THR SER LYS SER SEQRES 23 B 420 ARG VAL ARG GLU PHE LEU ILE GLU ASN PHE PRO ASP ILE SEQRES 24 B 420 ILE ASN ILE MET ASP LEU ASP ASP ALA VAL LYS ARG PHE SEQRES 25 B 420 ILE THR TYR PRO LYS GLU SER LEU VAL CYS VAL ASN CYS SEQRES 26 B 420 LYS PRO TYR ASP VAL PRO GLY GLY LYS ALA ILE LEU LEU SEQRES 27 B 420 GLY ASP ALA ALA HIS ALA MET VAL PRO PHE TYR GLY GLN SEQRES 28 B 420 GLY MET ASN CYS GLY PHE GLU ASP VAL ARG ILE LEU MET SEQRES 29 B 420 ALA LEU LEU LYS LYS HIS SER GLY ASP ARG SER ARG ALA SEQRES 30 B 420 PHE THR GLU TYR THR GLN THR ARG HIS LYS ASP LEU VAL SEQRES 31 B 420 SER ILE THR GLU LEU ALA LYS ARG ASN TYR LYS GLU MET SEQRES 32 B 420 SER HIS ASP VAL THR SER LYS ARG PHE LEU LEU ARG LYS SEQRES 33 B 420 LYS LEU ASP ALA HET FAD A 401 53 HET 7ZR A 402 28 HET FAD B 401 53 HET 7ZR B 402 28 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM 7ZR 3,4-DIMETHOXY-N-[4-(3-NITROPHENYL)-1,3-THIAZOL-2- HETNAM 2 7ZR YL]BENZENESULFONAMIDE HETSYN 7ZR RO 61-8048 FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 7ZR 2(C17 H15 N3 O6 S2) FORMUL 7 HOH *352(H2 O) HELIX 1 AA1 GLY A 11 GLU A 24 1 14 HELIX 2 AA2 SER A 55 ASP A 66 1 12 HELIX 3 AA3 ASP A 66 LEU A 74 1 9 HELIX 4 AA4 ARG A 109 LYS A 122 1 14 HELIX 5 AA5 SER A 172 ARG A 180 1 9 HELIX 6 AA6 LYS A 249 ILE A 256 1 8 HELIX 7 AA7 SER A 258 PHE A 270 1 13 HELIX 8 AA8 PRO A 271 ILE A 274 5 4 HELIX 9 AA9 ASP A 278 THR A 288 1 11 HELIX 10 AB1 GLY A 313 ALA A 318 1 6 HELIX 11 AB2 GLN A 325 HIS A 344 1 20 HELIX 12 AB3 ASP A 347 SER A 378 1 32 HELIX 13 AB4 GLY B 11 GLU B 24 1 14 HELIX 14 AB5 ALA B 56 SER B 64 1 9 HELIX 15 AB6 ASP B 66 LEU B 74 1 9 HELIX 16 AB7 ARG B 109 LYS B 122 1 14 HELIX 17 AB8 SER B 172 VAL B 182 1 11 HELIX 18 AB9 LYS B 249 ILE B 256 1 8 HELIX 19 AC1 SER B 258 PHE B 270 1 13 HELIX 20 AC2 PRO B 271 ILE B 274 5 4 HELIX 21 AC3 ASP B 278 THR B 288 1 11 HELIX 22 AC4 GLY B 313 ALA B 318 1 6 HELIX 23 AC5 GLN B 325 HIS B 344 1 20 HELIX 24 AC6 ASP B 347 HIS B 379 1 33 SHEET 1 AA1 6 GLU A 126 LYS A 128 0 SHEET 2 AA1 6 ASN A 27 TYR A 31 1 N LEU A 30 O LYS A 128 SHEET 3 AA1 6 SER A 4 ILE A 8 1 N ILE A 7 O THR A 29 SHEET 4 AA1 6 PHE A 163 GLY A 166 1 O ILE A 165 N ALA A 6 SHEET 5 AA1 6 ALA A 309 LEU A 311 1 O ILE A 310 N GLY A 166 SHEET 6 AA1 6 ASP A 303 VAL A 304 -1 N VAL A 304 O ALA A 309 SHEET 1 AA2 3 ASN A 51 ILE A 54 0 SHEET 2 AA2 3 ASN A 105 ASN A 108 -1 O ILE A 107 N LEU A 52 SHEET 3 AA2 3 ILE A 78 PRO A 79 -1 N ILE A 78 O SER A 106 SHEET 1 AA3 6 GLN A 92 LEU A 96 0 SHEET 2 AA3 6 GLY A 82 HIS A 86 -1 N ARG A 83 O GLN A 95 SHEET 3 AA3 6 HIS A 220 PRO A 225 1 O LEU A 221 N MET A 84 SHEET 4 AA3 6 MET A 230 ALA A 235 -1 O LEU A 231 N TRP A 224 SHEET 5 AA3 6 PHE A 241 SER A 248 -1 O THR A 242 N LEU A 234 SHEET 6 AA3 6 LEU A 193 ILE A 200 -1 N ARG A 194 O GLY A 247 SHEET 1 AA4 3 LYS A 132 GLU A 137 0 SHEET 2 AA4 3 GLN A 143 ALA A 148 -1 O HIS A 146 N LYS A 135 SHEET 3 AA4 3 HIS A 157 TYR A 161 -1 O TYR A 161 N GLN A 143 SHEET 1 AA5 4 VAL A 295 LYS A 300 0 SHEET 2 AA5 4 ASP A 185 TYR A 190 -1 N GLU A 189 O CYS A 296 SHEET 3 AA5 4 ASP B 185 MET B 191 -1 O GLN B 188 N PHE A 186 SHEET 4 AA5 4 LEU B 294 LYS B 300 -1 O LYS B 300 N ASP B 185 SHEET 1 AA6 6 GLU B 126 LYS B 128 0 SHEET 2 AA6 6 ASN B 27 TYR B 31 1 N LEU B 30 O LYS B 128 SHEET 3 AA6 6 SER B 4 ILE B 8 1 N ILE B 7 O TYR B 31 SHEET 4 AA6 6 PHE B 163 GLY B 166 1 O ILE B 165 N ALA B 6 SHEET 5 AA6 6 ALA B 309 LEU B 311 1 O ILE B 310 N GLY B 166 SHEET 6 AA6 6 ASP B 303 VAL B 304 -1 N VAL B 304 O ALA B 309 SHEET 1 AA7 3 ASN B 51 SER B 55 0 SHEET 2 AA7 3 ILE B 104 ASN B 108 -1 O ILE B 107 N LEU B 52 SHEET 3 AA7 3 ILE B 78 MET B 80 -1 N ILE B 78 O SER B 106 SHEET 1 AA8 6 GLN B 92 LEU B 96 0 SHEET 2 AA8 6 GLY B 82 HIS B 86 -1 N ARG B 83 O GLN B 95 SHEET 3 AA8 6 HIS B 220 PRO B 225 1 O ILE B 223 N HIS B 86 SHEET 4 AA8 6 MET B 230 ALA B 235 -1 O LEU B 231 N TRP B 224 SHEET 5 AA8 6 PHE B 241 SER B 248 -1 O THR B 242 N LEU B 234 SHEET 6 AA8 6 LEU B 193 ILE B 200 -1 N LEU B 198 O SER B 243 SHEET 1 AA9 3 LYS B 135 GLU B 137 0 SHEET 2 AA9 3 GLN B 143 HIS B 146 -1 O HIS B 146 N LYS B 135 SHEET 3 AA9 3 GLU B 159 TYR B 161 -1 O TYR B 161 N GLN B 143 CISPEP 1 LYS A 300 PRO A 301 0 1.14 CISPEP 2 LYS B 300 PRO B 301 0 1.81 SITE 1 AC1 35 GLY A 9 LEU A 12 VAL A 13 ASP A 32 SITE 2 AC1 35 PHE A 33 ARG A 34 LYS A 48 SER A 49 SITE 3 AC1 35 LEU A 52 ALA A 53 ARG A 109 HIS A 131 SITE 4 AC1 35 LYS A 132 LEU A 133 CYS A 167 ASP A 168 SITE 5 AC1 35 GLY A 169 ALA A 173 TYR A 195 GLY A 313 SITE 6 AC1 35 ASP A 314 PRO A 321 GLN A 325 GLY A 326 SITE 7 AC1 35 MET A 327 ASN A 328 7ZR A 402 HOH A 516 SITE 8 AC1 35 HOH A 527 HOH A 530 HOH A 541 HOH A 546 SITE 9 AC1 35 HOH A 556 HOH A 557 HOH A 573 SITE 1 AC2 15 ASN A 51 ALA A 53 ARG A 83 LEU A 221 SITE 2 AC2 15 ILE A 232 THR A 242 THR A 244 PHE A 246 SITE 3 AC2 15 PHE A 322 GLN A 325 ASN A 373 MET A 377 SITE 4 AC2 15 FAD A 401 HOH A 568 HOH A 615 SITE 1 AC3 33 GLY B 9 GLY B 11 VAL B 13 ASP B 32 SITE 2 AC3 33 PHE B 33 ARG B 34 LEU B 52 ALA B 53 SITE 3 AC3 33 ARG B 109 HIS B 131 LYS B 132 LEU B 133 SITE 4 AC3 33 CYS B 167 ASP B 168 GLY B 169 ALA B 173 SITE 5 AC3 33 TYR B 195 GLY B 313 ASP B 314 PRO B 321 SITE 6 AC3 33 GLN B 325 GLY B 326 MET B 327 ASN B 328 SITE 7 AC3 33 7ZR B 402 HOH B 511 HOH B 515 HOH B 525 SITE 8 AC3 33 HOH B 536 HOH B 561 HOH B 574 HOH B 583 SITE 9 AC3 33 HOH B 624 SITE 1 AC4 12 ALA B 53 ARG B 83 LEU B 221 ILE B 232 SITE 2 AC4 12 THR B 244 PHE B 246 PHE B 322 TYR B 323 SITE 3 AC4 12 GLN B 325 FAD B 401 HOH B 523 HOH B 540 CRYST1 58.878 99.764 84.693 90.00 105.45 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016984 0.000000 0.004695 0.00000 SCALE2 0.000000 0.010024 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012250 0.00000