HEADER TRANSFERASE 26-FEB-17 5X7H TITLE CRYSTAL STRUCTURE OF PAENIBACILLUS SP. 598K TITLE 2 CYCLOISOMALTOOLIGOSACCHARIDE GLUCANOTRANSFERASE COMPLEXED WITH TITLE 3 CYCLOISOMALTOHEPTAOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLOISOMALTOOLIGOSACCHARIDE GLUCANOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 41-739; COMPND 5 EC: 2.4.1.248; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAENIBACILLUS SP. 598K; SOURCE 3 ORGANISM_TAXID: 1117987; SOURCE 4 STRAIN: 598K; SOURCE 5 GENE: CIT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS GLYDOSIDE HYDROLASE FAMILY 66, CARBOHYDRATE-BINDING MODULE FAMILY 35, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.FUJIMOTO,N.KISHINE,N.SUZUKI,R.SUZUKI,M.MOMMA,K.FUNANE REVDAT 6 22-NOV-23 5X7H 1 REMARK HETSYN LINK REVDAT 5 29-JUL-20 5X7H 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 ATOM REVDAT 4 02-MAY-18 5X7H 1 JRNL REVDAT 3 06-DEC-17 5X7H 1 JRNL REVDAT 2 30-AUG-17 5X7H 1 REMARK REVDAT 1 26-APR-17 5X7H 0 JRNL AUTH Z.FUJIMOTO,N.KISHINE,N.SUZUKI,R.SUZUKI,D.MIZUSHIMA,M.MOMMA, JRNL AUTH 2 K.KIMURA,K.FUNANE JRNL TITL ISOMALTOOLIGOSACCHARIDE-BINDING STRUCTURE OFPAENIBACILLUSSP. JRNL TITL 2 598K CYCLOISOMALTOOLIGOSACCHARIDE GLUCANOTRANSFERASE JRNL REF BIOSCI. REP. V. 37 2017 JRNL REFN ISSN 1573-4935 JRNL PMID 28385816 JRNL DOI 10.1042/BSR20170253 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.SUZUKI,K.TERASAWA,K.KIMURA,Z.FUJIMOTO,M.MOMMA,M.KOBAYASHI, REMARK 1 AUTH 2 A.KIMURA,K.FUNANE REMARK 1 TITL BIOCHEMICAL CHARACTERIZATION OF A NOVEL REMARK 1 TITL 2 CYCLOISOMALTOOLIGOSACCHARIDE GLUCANOTRANSFERASE FROM REMARK 1 TITL 3 PAENIBACILLUS SP. 598K REMARK 1 REF BIOCHIM. BIOPHYS. ACTA V.1824 919 2012 REMARK 1 REFN ISSN 0006-3002 REMARK 1 PMID 22542750 REMARK 1 DOI 10.1016/J.BBAPAP.2012.04.001 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 97.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 26895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1324 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1901 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5541 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 198 REMARK 3 SOLVENT ATOMS : 266 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.35000 REMARK 3 B22 (A**2) : 1.35000 REMARK 3 B33 (A**2) : -4.38000 REMARK 3 B12 (A**2) : 0.67000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.636 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.270 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.191 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.399 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5998 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4932 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8236 ; 1.638 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11551 ; 0.995 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 701 ; 7.301 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 306 ;36.507 ;24.935 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 824 ;15.008 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;18.583 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 953 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6589 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1225 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2801 ; 2.947 ; 4.251 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2800 ; 2.945 ; 4.251 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3500 ; 4.616 ; 6.369 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3501 ; 4.615 ; 6.369 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3197 ; 3.427 ; 5.091 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3196 ; 3.424 ; 5.092 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4736 ; 5.352 ; 7.583 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6600 ; 7.935 ;49.173 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6581 ; 7.937 ;49.164 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5X7H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1300003046. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28297 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.50 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.92200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5X7G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 12% TACSIMATE, PH 5.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.75833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 81.51667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 81.51667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.75833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1148 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 20 REMARK 465 GLY A 21 REMARK 465 SER A 22 REMARK 465 SER A 23 REMARK 465 HIS A 24 REMARK 465 HIS A 25 REMARK 465 HIS A 26 REMARK 465 HIS A 27 REMARK 465 HIS A 28 REMARK 465 HIS A 29 REMARK 465 SER A 30 REMARK 465 SER A 31 REMARK 465 GLY A 32 REMARK 465 LEU A 33 REMARK 465 VAL A 34 REMARK 465 PRO A 35 REMARK 465 ARG A 36 REMARK 465 GLY A 37 REMARK 465 SER A 38 REMARK 465 HIS A 39 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 40 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS A 384 C2 MLI A 821 2.04 REMARK 500 NE2 HIS A 384 O6 MLI A 821 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 86 -114.99 49.66 REMARK 500 TYR A 238 25.85 -155.05 REMARK 500 GLU A 242 151.29 -46.63 REMARK 500 ASN A 271 24.48 -144.14 REMARK 500 SER A 273 -37.15 -158.11 REMARK 500 ASN A 346 105.54 -169.69 REMARK 500 LYS A 349 50.57 -144.22 REMARK 500 ALA A 365 -5.74 79.38 REMARK 500 ASP A 374 44.99 -84.84 REMARK 500 TRP A 383 -106.52 -111.69 REMARK 500 ALA A 412 87.60 -157.86 REMARK 500 ARG A 417 -13.79 78.87 REMARK 500 ASN A 438 33.64 -151.02 REMARK 500 ASP A 492 53.51 39.87 REMARK 500 SER A 493 -23.68 73.87 REMARK 500 PHE A 495 151.43 -48.37 REMARK 500 GLU A 496 -60.17 -132.76 REMARK 500 GLU A 570 -25.55 -154.66 REMARK 500 GLU A 573 -142.19 52.79 REMARK 500 ASP A 621 -179.10 -53.42 REMARK 500 SER A 622 -142.01 68.85 REMARK 500 ASN A 680 71.11 31.58 REMARK 500 ASP A 718 -169.07 -128.29 REMARK 500 GLU A 732 -71.52 -111.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MLI A 821 REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 GLC C 3 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 801 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 425 OE1 REMARK 620 2 GLU A 427 OE1 81.1 REMARK 620 3 GLU A 427 OE2 98.3 47.2 REMARK 620 4 THR A 444 O 80.2 74.6 120.7 REMARK 620 5 GLY A 447 O 160.1 79.6 71.9 89.9 REMARK 620 6 ASP A 542 O 76.9 119.6 81.5 150.2 117.4 REMARK 620 7 ASP A 542 OD1 99.3 158.3 151.8 84.0 96.8 81.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 803 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 629 O REMARK 620 2 VAL A 632 O 76.0 REMARK 620 3 HOH A1090 O 79.4 94.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 802 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 665 OD1 REMARK 620 2 GLN A 667 O 100.5 REMARK 620 3 HOH A 994 O 87.7 125.2 REMARK 620 4 HOH A1000 O 174.4 85.0 88.4 REMARK 620 5 HOH A1042 O 87.5 102.0 132.7 92.2 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5X7G RELATED DB: PDB REMARK 900 CARBOHYDRATE FREE FORM REMARK 900 RELATED ID: 5X7O RELATED DB: PDB REMARK 900 RELATED ID: 5X7P RELATED DB: PDB REMARK 900 RELATED ID: 5X7Q RELATED DB: PDB REMARK 900 RELATED ID: 5X7R RELATED DB: PDB REMARK 900 RELATED ID: 5X7S RELATED DB: PDB DBREF 5X7H A 41 739 UNP G9MBW2 G9MBW2_9BACL 41 739 SEQADV 5X7H MET A 20 UNP G9MBW2 EXPRESSION TAG SEQADV 5X7H GLY A 21 UNP G9MBW2 EXPRESSION TAG SEQADV 5X7H SER A 22 UNP G9MBW2 EXPRESSION TAG SEQADV 5X7H SER A 23 UNP G9MBW2 EXPRESSION TAG SEQADV 5X7H HIS A 24 UNP G9MBW2 EXPRESSION TAG SEQADV 5X7H HIS A 25 UNP G9MBW2 EXPRESSION TAG SEQADV 5X7H HIS A 26 UNP G9MBW2 EXPRESSION TAG SEQADV 5X7H HIS A 27 UNP G9MBW2 EXPRESSION TAG SEQADV 5X7H HIS A 28 UNP G9MBW2 EXPRESSION TAG SEQADV 5X7H HIS A 29 UNP G9MBW2 EXPRESSION TAG SEQADV 5X7H SER A 30 UNP G9MBW2 EXPRESSION TAG SEQADV 5X7H SER A 31 UNP G9MBW2 EXPRESSION TAG SEQADV 5X7H GLY A 32 UNP G9MBW2 EXPRESSION TAG SEQADV 5X7H LEU A 33 UNP G9MBW2 EXPRESSION TAG SEQADV 5X7H VAL A 34 UNP G9MBW2 EXPRESSION TAG SEQADV 5X7H PRO A 35 UNP G9MBW2 EXPRESSION TAG SEQADV 5X7H ARG A 36 UNP G9MBW2 EXPRESSION TAG SEQADV 5X7H GLY A 37 UNP G9MBW2 EXPRESSION TAG SEQADV 5X7H SER A 38 UNP G9MBW2 EXPRESSION TAG SEQADV 5X7H HIS A 39 UNP G9MBW2 EXPRESSION TAG SEQADV 5X7H MET A 40 UNP G9MBW2 EXPRESSION TAG SEQRES 1 A 720 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 720 LEU VAL PRO ARG GLY SER HIS MET ALA SER GLY ASP VAL SEQRES 3 A 720 GLU ARG VAL TYR THR ASP LYS SER ARG TYR ASP PRO GLY SEQRES 4 A 720 ASP PRO VAL THR ILE THR ALA GLN VAL ARG ASN THR ASP SEQRES 5 A 720 SER ILE ALA TRP THR GLY THR VAL GLN LEU ARG ILE ALA SEQRES 6 A 720 HIS LEU GLU ASP GLN VAL HIS THR ALA SER GLN THR VAL SEQRES 7 A 720 THR ILE GLY GLY GLY GLN THR GLU ASP VAL GLN PHE THR SEQRES 8 A 720 TRP THR SER PRO ALA THR ASP PHE LYS GLY TYR LEU ALA SEQRES 9 A 720 ASP ILE ASP ALA GLY ALA LEU GLY SER GLY THR THR ALA SEQRES 10 A 720 ILE ASP VAL SER SER ASP PHE ALA ARG TYR PRO ARG TYR SEQRES 11 A 720 GLY TYR VAL SER GLU PHE HIS PRO ASP GLU THR ALA ALA SEQRES 12 A 720 GLU SER ALA ALA LYS ILE ASP GLU LEU ALA GLN ASP TYR SEQRES 13 A 720 LYS ILE ASN ALA TRP GLN PHE TYR ASP TRP MET TRP ARG SEQRES 14 A 720 HIS GLU THR MET ILE LYS ARG THR GLY SER ALA ILE ASP SEQRES 15 A 720 SER THR TRP ILE ASP LEU PHE ASN ARG GLU ILE SER TRP SEQRES 16 A 720 GLN THR ILE GLN ASN GLN ILE ASP ALA VAL HIS ASP GLN SEQRES 17 A 720 ASN GLY ALA ALA MET ALA TYR ALA MET ILE TYR ALA ALA SEQRES 18 A 720 ARG GLU ASP TYR GLU SER TYR GLY VAL ASP SER GLU TRP SEQRES 19 A 720 GLY ILE TYR GLN ASP PRO ASN HIS LEU GLN GLN LEU ASP SEQRES 20 A 720 VAL ASP PHE GLY ASN ASN SER THR TYR MET TYR LEU PHE SEQRES 21 A 720 ASN PRO ALA ASN THR ASP TRP GLN SER PHE ILE HIS ALA SEQRES 22 A 720 GLN TYR LEU ASP ALA ILE ASN THR ALA GLY PHE ASP GLY SEQRES 23 A 720 ILE HIS VAL ASP GLN MET GLY GLN ARG ASN ASN VAL TYR SEQRES 24 A 720 ASP TYR TRP GLY ASN PRO LEU ASN PHE PRO ALA THR PHE SEQRES 25 A 720 THR PRO PHE ILE ASN GLU ALA LYS SER THR LEU THR ALA SEQRES 26 A 720 ASN ASN SER ASP LYS ASP ARG ILE THR TYR ASN ILE VAL SEQRES 27 A 720 ASP GLY THR VAL ASP GLY TRP ALA ALA ASN GLU VAL SER SEQRES 28 A 720 GLY GLY ALA ASP VAL ASP PHE LEU TYR SER GLU ILE TRP SEQRES 29 A 720 HIS LEU SER ASP SER TYR ILE GLN LEU LYS ASP TYR ILE SEQRES 30 A 720 ASP SER LEU LYS ALA ASN SER GLY ASN LYS ALA VAL VAL SEQRES 31 A 720 LEU ALA ALA TYR MET ASN TYR ARG GLU ASN ILE GLY ASP SEQRES 32 A 720 ARG TYR GLU ALA GLU SER ALA ALA LEU THR ASN THR ALA SEQRES 33 A 720 THR ASN ASN ASN HIS SER GLY TYR THR GLY SER GLY PHE SEQRES 34 A 720 VAL ASP GLN PHE ALA ASP PRO GLY ASP ALA VAL THR PHE SEQRES 35 A 720 SER ILE THR VAL PRO GLU GLU GLY TYR TYR SER LEU VAL SEQRES 36 A 720 PHE ARG PHE ALA ASN ASN SER GLY PHE THR ALA THR ARG SEQRES 37 A 720 ASN LEU TYR VAL ASP SER ALA PHE GLU ILE GLU LEU PRO SEQRES 38 A 720 PHE GLN ASN GLN PRO SER TRP SER ALA TRP SER HIS GLU SEQRES 39 A 720 THR TRP HIS GLN VAL TYR LEU THR PRO GLY THR HIS THR SEQRES 40 A 720 ILE LYS LEU ALA TYR ASP ALA GLY ASN VAL GLY ALA ILE SEQRES 41 A 720 ASN LEU ASP SER LEU THR LEU GLY THR PHE ASP PRO HIS SEQRES 42 A 720 SER ILE ARG LEU ALA ASN ALA MET MET ALA ALA SER GLY SEQRES 43 A 720 ALA THR HIS ILE GLU LEU GLY GLU ASP SER GLN MET LEU SEQRES 44 A 720 ALA HIS GLU TYR TYR PRO ASN ARG SER LYS SER MET ARG SEQRES 45 A 720 SER GLU LEU LYS GLU ALA LEU LYS GLN HIS TYR ASN PHE SEQRES 46 A 720 ILE THR ALA TYR GLU ASN LEU LEU PHE ASP PRO ASP VAL SEQRES 47 A 720 VAL ASP ASN ASP SER GLY SER GLN PHE VAL ASN LEU ASP SEQRES 48 A 720 MET VAL SER ALA SER GLY ASP ALA SER PRO ASN THR VAL SEQRES 49 A 720 TRP HIS GLN VAL LYS ARG THR PRO GLU TYR ASN ILE VAL SEQRES 50 A 720 HIS PHE ILE ASN LEU ALA ASN ASN ASP ASN GLN TRP ARG SEQRES 51 A 720 ASN SER ALA ASN PRO PRO THR LEU HIS THR ASN ILE ALA SEQRES 52 A 720 THR LYS VAL TYR VAL SER PRO ASP GLU THR ILE SER GLY SEQRES 53 A 720 VAL TYR LEU ALA SER PRO ASP HIS ASP ASP ASN ARG THR SEQRES 54 A 720 GLN SER LEU ALA TYR THR THR GLY THR ASP ILE HIS GLY SEQRES 55 A 720 ASP TYR VAL ALA PHE THR LEU PRO SER LEU GLU TYR TRP SEQRES 56 A 720 SER MET VAL TYR MET HET GLC B 1 12 HET GLC B 2 11 HET GLC B 3 11 HET GLC B 4 11 HET GLC B 5 11 HET GLC B 6 11 HET GLC B 7 11 HET GLC C 1 22 HET GLC C 2 22 HET GLC C 3 22 HET GLC C 4 22 HET GLC C 5 22 HET GLC C 6 22 HET GLC C 7 22 HET GLC D 1 12 HET GLC D 2 11 HET GLC D 3 11 HET CA A 801 1 HET CA A 802 1 HET NA A 803 1 HET MLI A 821 10 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM MLI MALONATE ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 GLC 17(C6 H12 O6) FORMUL 5 CA 2(CA 2+) FORMUL 7 NA NA 1+ FORMUL 8 MLI C3 H2 O4 2- FORMUL 9 HOH *266(H2 O) HELIX 1 AA1 GLY A 128 LEU A 130 5 3 HELIX 2 AA2 ASP A 142 TYR A 146 5 5 HELIX 3 AA3 THR A 160 LYS A 176 1 17 HELIX 4 AA4 TRP A 214 ASP A 226 1 13 HELIX 5 AA5 ASP A 243 GLY A 248 5 6 HELIX 6 AA6 ASP A 250 TRP A 253 5 4 HELIX 7 AA7 ASN A 283 GLY A 302 1 20 HELIX 8 AA8 ASN A 326 ALA A 329 5 4 HELIX 9 AA9 THR A 330 ASN A 346 1 17 HELIX 10 AB1 ALA A 365 ALA A 373 1 9 HELIX 11 AB2 SER A 388 GLY A 404 1 17 HELIX 12 AB3 ASP A 550 SER A 564 1 15 HELIX 13 AB4 ARG A 591 TYR A 608 1 18 HELIX 14 AB5 TYR A 608 PHE A 613 1 6 HELIX 15 AB6 GLY A 623 GLN A 625 5 3 HELIX 16 AB7 HIS A 703 ARG A 707 5 5 SHEET 1 AA1 3 GLY A 43 THR A 50 0 SHEET 2 AA1 3 PRO A 60 ASN A 69 -1 O GLN A 66 N ARG A 47 SHEET 3 AA1 3 THR A 104 THR A 112 -1 O TRP A 111 N VAL A 61 SHEET 1 AA2 4 ASP A 88 ILE A 99 0 SHEET 2 AA2 4 TRP A 75 HIS A 85 -1 N LEU A 81 O ALA A 93 SHEET 3 AA2 4 LYS A 119 ASP A 126 -1 O LEU A 122 N ALA A 84 SHEET 4 AA2 4 SER A 132 VAL A 139 -1 O THR A 135 N ALA A 123 SHEET 1 AA3 8 TYR A 149 VAL A 152 0 SHEET 2 AA3 8 ALA A 179 PHE A 182 1 O ALA A 179 N GLY A 150 SHEET 3 AA3 8 ALA A 230 MET A 236 1 O MET A 232 N PHE A 182 SHEET 4 AA3 8 GLY A 305 ASP A 309 1 O ASP A 309 N ALA A 235 SHEET 5 AA3 8 ARG A 351 VAL A 357 1 O THR A 353 N VAL A 308 SHEET 6 AA3 8 LEU A 378 GLU A 381 1 O TYR A 379 N ILE A 356 SHEET 7 AA3 8 VAL A 408 ALA A 411 1 O ALA A 411 N SER A 380 SHEET 8 AA3 8 ALA A 566 ILE A 569 1 O THR A 567 N VAL A 408 SHEET 1 AA4 2 ARG A 195 THR A 196 0 SHEET 2 AA4 2 ALA A 199 ILE A 200 -1 O ALA A 199 N THR A 196 SHEET 1 AA5 2 THR A 203 ILE A 205 0 SHEET 2 AA5 2 GLU A 211 SER A 213 -1 O ILE A 212 N TRP A 204 SHEET 1 AA6 3 ALA A 239 ARG A 241 0 SHEET 2 AA6 3 TYR A 275 LEU A 278 -1 O TYR A 277 N ALA A 240 SHEET 3 AA6 3 ASP A 266 ASP A 268 -1 N VAL A 267 O MET A 276 SHEET 1 AA7 2 ILE A 255 TYR A 256 0 SHEET 2 AA7 2 TYR A 318 ASP A 319 -1 O TYR A 318 N TYR A 256 SHEET 1 AA8 4 ARG A 423 GLU A 425 0 SHEET 2 AA8 4 ASN A 540 GLY A 547 -1 O LEU A 544 N TYR A 424 SHEET 3 AA8 4 GLY A 469 ALA A 478 -1 N ARG A 476 O SER A 543 SHEET 4 AA8 4 SER A 511 LEU A 520 -1 O SER A 511 N PHE A 477 SHEET 1 AA9 5 ALA A 430 THR A 432 0 SHEET 2 AA9 5 ALA A 458 VAL A 465 -1 O ALA A 458 N THR A 432 SHEET 3 AA9 5 GLY A 523 ALA A 530 -1 O ILE A 527 N PHE A 461 SHEET 4 AA9 5 ALA A 485 VAL A 491 -1 N TYR A 490 O LYS A 528 SHEET 5 AA9 5 ALA A 494 PHE A 501 -1 O ILE A 497 N LEU A 489 SHEET 1 AB1 2 ALA A 435 ASN A 437 0 SHEET 2 AB1 2 PHE A 448 ASP A 450 -1 O ASP A 450 N ALA A 435 SHEET 1 AB2 2 LEU A 571 GLY A 572 0 SHEET 2 AB2 2 GLN A 576 MET A 577 -1 O GLN A 576 N GLY A 572 SHEET 1 AB3 3 VAL A 618 ASP A 619 0 SHEET 2 AB3 3 VAL A 643 ARG A 649 -1 O ARG A 649 N VAL A 618 SHEET 3 AB3 3 ALA A 634 SER A 635 1 N SER A 635 O HIS A 645 SHEET 1 AB4 6 VAL A 618 ASP A 619 0 SHEET 2 AB4 6 VAL A 643 ARG A 649 -1 O ARG A 649 N VAL A 618 SHEET 3 AB4 6 ASN A 654 ASN A 660 -1 O ILE A 655 N LYS A 648 SHEET 4 AB4 6 TRP A 734 MET A 739 -1 O SER A 735 N PHE A 658 SHEET 5 AB4 6 TYR A 697 ALA A 699 -1 N TYR A 697 O TYR A 738 SHEET 6 AB4 6 GLN A 709 SER A 710 -1 O GLN A 709 N LEU A 698 SHEET 1 AB5 4 VAL A 627 LEU A 629 0 SHEET 2 AB5 4 HIS A 678 TYR A 686 -1 O LYS A 684 N ASN A 628 SHEET 3 AB5 4 GLY A 721 LEU A 731 -1 O PHE A 726 N THR A 683 SHEET 4 AB5 4 TYR A 713 ASP A 718 -1 N THR A 714 O ALA A 725 LINK O6 GLC B 1 C1 GLC B 2 1555 1555 1.42 LINK O6 GLC B 2 C1 GLC B 3 1555 1555 1.46 LINK O6 GLC B 3 C1 GLC B 4 1555 1555 1.44 LINK O6 GLC B 4 C1 GLC B 5 1555 1555 1.46 LINK O6 GLC B 5 C1 GLC B 6 1555 1555 1.46 LINK O6 GLC B 6 C1 GLC B 7 1555 1555 1.45 LINK O6 AGLC C 1 C1 AGLC C 2 1555 1555 1.45 LINK O6 BGLC C 1 C1 BGLC C 2 1555 1555 1.45 LINK C1 AGLC C 1 O6 AGLC C 7 1555 1555 1.46 LINK C1 BGLC C 1 O6 BGLC C 7 1555 1555 1.44 LINK O6 AGLC C 2 C1 AGLC C 3 1555 1555 1.44 LINK O6 BGLC C 2 C1 BGLC C 3 1555 1555 1.44 LINK O6 AGLC C 3 C1 AGLC C 4 1555 1555 1.45 LINK O6 BGLC C 3 C1 BGLC C 4 1555 1555 1.45 LINK O6 AGLC C 4 C1 AGLC C 5 1555 1555 1.45 LINK O6 BGLC C 4 C1 BGLC C 5 1555 1555 1.46 LINK O6 AGLC C 5 C1 AGLC C 6 1555 1555 1.44 LINK O6 BGLC C 5 C1 BGLC C 6 1555 1555 1.45 LINK O6 AGLC C 6 C1 AGLC C 7 1555 1555 1.45 LINK O6 BGLC C 6 C1 BGLC C 7 1555 1555 1.44 LINK O6 GLC D 1 C1 GLC D 2 1555 1555 1.45 LINK O6 GLC D 2 C1 GLC D 3 1555 1555 1.48 LINK OE1 GLU A 425 CA CA A 801 1555 1555 2.33 LINK OE1 GLU A 427 CA CA A 801 1555 1555 3.00 LINK OE2 GLU A 427 CA CA A 801 1555 1555 2.40 LINK O THR A 444 CA CA A 801 1555 1555 2.42 LINK O GLY A 447 CA CA A 801 1555 1555 2.41 LINK O ASP A 542 CA CA A 801 1555 1555 2.81 LINK OD1 ASP A 542 CA CA A 801 1555 1555 2.26 LINK O LEU A 629 NA NA A 803 1555 1555 2.52 LINK O VAL A 632 NA NA A 803 1555 1555 3.14 LINK OD1 ASP A 665 CA CA A 802 1555 1555 2.40 LINK O GLN A 667 CA CA A 802 1555 1555 2.48 LINK CA CA A 802 O HOH A 994 1555 1555 2.47 LINK CA CA A 802 O HOH A1000 1555 1555 2.52 LINK CA CA A 802 O HOH A1042 1555 1555 2.29 LINK NA NA A 803 O HOH A1090 1555 1555 2.77 CRYST1 112.844 112.844 122.275 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008862 0.005116 0.000000 0.00000 SCALE2 0.000000 0.010233 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008178 0.00000