HEADER TRANSFERASE 27-FEB-17 5X7J TITLE CRYSTAL STRUCTURE OF THYMIDYLATE KINASE FROM THERMUS THERMOPHILUS HB8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DTMP KINASE; COMPND 5 EC: 2.7.4.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS (STRAIN HB8 / ATCC 27634 / SOURCE 3 DSM 579); SOURCE 4 ORGANISM_TAXID: 300852; SOURCE 5 STRAIN: HB8 / ATCC 27634 / DSM 579; SOURCE 6 GENE: TMK, TTHA1607; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS NMP KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.K.CHAUDHARY,J.JEYAKANTHAN,K.SEKAR REVDAT 3 22-NOV-23 5X7J 1 LINK REVDAT 2 20-MAR-19 5X7J 1 JRNL REVDAT 1 07-MAR-18 5X7J 0 JRNL AUTH S.K.CHAUDHARY,Y.IYYAPPAN,M.ELAYAPPAN,J.JEYAKANTHAN,K.SEKAR JRNL TITL INSIGHTS INTO PRODUCT RELEASE DYNAMICS THROUGH STRUCTURAL JRNL TITL 2 ANALYSES OF THYMIDYLATE KINASE. JRNL REF INT. J. BIOL. MACROMOL. V. 123 637 2019 JRNL REFN ISSN 1879-0003 JRNL PMID 30447376 JRNL DOI 10.1016/J.IJBIOMAC.2018.11.025 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 32679 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1667 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.84 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2211 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.4070 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.4040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2975 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 189 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.40000 REMARK 3 B22 (A**2) : 0.45000 REMARK 3 B33 (A**2) : -0.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.133 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.865 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3046 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3055 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4113 ; 1.880 ; 2.018 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6999 ; 1.066 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 380 ; 5.895 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;29.627 ;20.551 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 508 ;12.878 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 47 ;17.262 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 466 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3328 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 661 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1530 ; 1.921 ; 1.899 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1530 ; 1.917 ; 1.899 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1905 ; 2.861 ; 2.823 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1906 ; 2.862 ; 2.824 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1516 ; 2.653 ; 2.239 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1516 ; 2.645 ; 2.239 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2209 ; 4.085 ; 3.236 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3334 ; 6.314 ;23.346 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3308 ; 6.025 ;23.219 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5X7J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1300003052. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU ULTRAX 18 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54179 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34412 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 40.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2PBR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CACL2.2H2O, 20% W/V, PEG 3350, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.73500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.31500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.10500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.31500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.73500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.10500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -239.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 51 REMARK 465 LEU A 52 REMARK 465 THR A 53 REMARK 465 ARG A 143 REMARK 465 PRO A 144 REMARK 465 ASP A 145 REMARK 465 ARG A 146 REMARK 465 LEU A 147 REMARK 465 GLU A 148 REMARK 465 GLY A 149 REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 54 CG CD OE1 NE2 REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 ARG A 139 CG CD NE CZ NH1 NH2 REMARK 470 THR B 53 CG2 REMARK 470 GLN B 54 CG CD OE1 NE2 REMARK 470 GLU B 55 CG CD OE1 OE2 REMARK 470 GLU B 61 OE2 REMARK 470 GLU B 117 O REMARK 470 ARG B 120 NH1 NH2 REMARK 470 ARG B 142 NH1 NH2 REMARK 470 GLU B 148 CG CD OE1 OE2 REMARK 470 PRO B 198 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 314 O HOH A 372 1.31 REMARK 500 O HOH B 360 O HOH B 391 1.98 REMARK 500 O HOH B 303 O HOH B 397 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 354 O HOH B 382 1455 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 48 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 69 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 116 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 116 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 194 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 69 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG B 69 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG B 167 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 76 -57.71 -122.52 REMARK 500 ARG A 91 135.16 77.99 REMARK 500 TYR A 92 -151.89 -147.43 REMARK 500 VAL B 76 -54.48 -120.06 REMARK 500 ARG B 91 133.84 84.52 REMARK 500 TYR B 92 -150.52 -146.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 208 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 7 OG1 REMARK 620 2 GLU A 9 OE2 115.9 REMARK 620 3 ASP A 94 OD2 119.4 101.4 REMARK 620 4 HOH A 364 O 129.1 110.6 67.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 209 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 19 O REMARK 620 2 GLN A 19 OE1 96.2 REMARK 620 3 HOH A 350 O 131.8 112.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 207 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 62 OH REMARK 620 2 SER A 66 OG 77.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 206 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 130 O REMARK 620 2 HOH A 339 O 107.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 209 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 7 OG1 REMARK 620 2 GLU B 9 OE2 120.0 REMARK 620 3 ASP B 94 OD2 119.7 103.2 REMARK 620 4 HOH B 384 O 124.0 110.5 65.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 207 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 18 OG1 REMARK 620 2 HOH B 396 O 72.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 210 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 19 O REMARK 620 2 GLN B 19 OE1 97.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 211 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 65 O REMARK 620 2 ASP B 68 OD2 103.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 215 DBREF 5X7J A 1 198 UNP Q5SHX3 KTHY_THET8 1 198 DBREF 5X7J B 1 198 UNP Q5SHX3 KTHY_THET8 1 198 SEQRES 1 A 198 MET PRO GLY LEU PHE LEU THR LEU GLU GLY LEU ASP GLY SEQRES 2 A 198 SER GLY LYS THR THR GLN ALA ARG ARG LEU ALA ALA PHE SEQRES 3 A 198 LEU GLU ALA GLN GLY ARG PRO VAL LEU LEU THR ARG GLU SEQRES 4 A 198 PRO GLY GLY GLY LEU PRO GLU VAL ARG SER LEU LEU LEU SEQRES 5 A 198 THR GLN GLU LEU SER PRO GLU ALA GLU TYR LEU LEU PHE SEQRES 6 A 198 SER ALA ASP ARG ALA GLU HIS VAL ARG LYS VAL ILE LEU SEQRES 7 A 198 PRO GLY LEU ALA ALA GLY LYS VAL VAL ILE SER ASP ARG SEQRES 8 A 198 TYR LEU ASP SER SER LEU ALA TYR GLN GLY TYR GLY ARG SEQRES 9 A 198 GLY LEU PRO LEU PRO TRP LEU ARG GLU VAL ALA ARG GLU SEQRES 10 A 198 ALA THR ARG GLY LEU LYS PRO ARG LEU THR PHE LEU LEU SEQRES 11 A 198 ASP LEU PRO PRO GLU ALA ALA LEU ARG ARG VAL ARG ARG SEQRES 12 A 198 PRO ASP ARG LEU GLU GLY LEU GLY LEU GLU PHE PHE ARG SEQRES 13 A 198 ARG VAL ARG GLU GLY TYR LEU ALA LEU ALA ARG ALA GLU SEQRES 14 A 198 PRO GLY ARG PHE VAL VAL LEU ASP ALA THR LEU PRO GLU SEQRES 15 A 198 GLU GLU ILE ALA ARG ALA ILE GLN ALA HIS LEU ARG PRO SEQRES 16 A 198 LEU LEU PRO SEQRES 1 B 198 MET PRO GLY LEU PHE LEU THR LEU GLU GLY LEU ASP GLY SEQRES 2 B 198 SER GLY LYS THR THR GLN ALA ARG ARG LEU ALA ALA PHE SEQRES 3 B 198 LEU GLU ALA GLN GLY ARG PRO VAL LEU LEU THR ARG GLU SEQRES 4 B 198 PRO GLY GLY GLY LEU PRO GLU VAL ARG SER LEU LEU LEU SEQRES 5 B 198 THR GLN GLU LEU SER PRO GLU ALA GLU TYR LEU LEU PHE SEQRES 6 B 198 SER ALA ASP ARG ALA GLU HIS VAL ARG LYS VAL ILE LEU SEQRES 7 B 198 PRO GLY LEU ALA ALA GLY LYS VAL VAL ILE SER ASP ARG SEQRES 8 B 198 TYR LEU ASP SER SER LEU ALA TYR GLN GLY TYR GLY ARG SEQRES 9 B 198 GLY LEU PRO LEU PRO TRP LEU ARG GLU VAL ALA ARG GLU SEQRES 10 B 198 ALA THR ARG GLY LEU LYS PRO ARG LEU THR PHE LEU LEU SEQRES 11 B 198 ASP LEU PRO PRO GLU ALA ALA LEU ARG ARG VAL ARG ARG SEQRES 12 B 198 PRO ASP ARG LEU GLU GLY LEU GLY LEU GLU PHE PHE ARG SEQRES 13 B 198 ARG VAL ARG GLU GLY TYR LEU ALA LEU ALA ARG ALA GLU SEQRES 14 B 198 PRO GLY ARG PHE VAL VAL LEU ASP ALA THR LEU PRO GLU SEQRES 15 B 198 GLU GLU ILE ALA ARG ALA ILE GLN ALA HIS LEU ARG PRO SEQRES 16 B 198 LEU LEU PRO HET CL A 201 1 HET CL A 202 1 HET CL A 203 1 HET CL A 204 1 HET CA A 205 1 HET CA A 206 1 HET CA A 207 1 HET CA A 208 1 HET CA A 209 1 HET CL B 201 1 HET CL B 202 1 HET CL B 203 1 HET CL B 204 1 HET CL B 205 1 HET CL B 206 1 HET CA B 207 1 HET CA B 208 1 HET CA B 209 1 HET CA B 210 1 HET CA B 211 1 HET EDO B 212 4 HET EDO B 213 4 HET EDO B 214 4 HET EDO B 215 4 HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CL 10(CL 1-) FORMUL 7 CA 10(CA 2+) FORMUL 23 EDO 4(C2 H6 O2) FORMUL 27 HOH *189(H2 O) HELIX 1 AA1 GLY A 15 GLN A 30 1 16 HELIX 2 AA2 LEU A 44 SER A 49 1 6 HELIX 3 AA3 SER A 57 VAL A 76 1 20 HELIX 4 AA4 VAL A 76 ALA A 83 1 8 HELIX 5 AA5 TYR A 92 GLY A 101 1 10 HELIX 6 AA6 PRO A 107 THR A 119 1 13 HELIX 7 AA7 PRO A 133 VAL A 141 1 9 HELIX 8 AA8 GLY A 151 GLU A 169 1 19 HELIX 9 AA9 PRO A 181 ARG A 194 1 14 HELIX 10 AB1 PRO A 195 LEU A 197 5 3 HELIX 11 AB2 GLY B 15 GLN B 30 1 16 HELIX 12 AB3 GLU B 46 LEU B 51 1 6 HELIX 13 AB4 SER B 57 VAL B 76 1 20 HELIX 14 AB5 VAL B 76 ALA B 83 1 8 HELIX 15 AB6 TYR B 92 GLN B 100 1 9 HELIX 16 AB7 PRO B 107 GLU B 117 1 11 HELIX 17 AB8 PRO B 133 VAL B 141 1 9 HELIX 18 AB9 PRO B 144 GLU B 148 5 5 HELIX 19 AC1 GLY B 151 GLU B 169 1 19 HELIX 20 AC2 PRO B 181 ARG B 194 1 14 SHEET 1 AA1 5 VAL A 34 ARG A 38 0 SHEET 2 AA1 5 VAL A 86 ASP A 90 1 O ILE A 88 N THR A 37 SHEET 3 AA1 5 LEU A 4 GLY A 10 1 N LEU A 6 O VAL A 87 SHEET 4 AA1 5 LEU A 126 ASP A 131 1 O PHE A 128 N THR A 7 SHEET 5 AA1 5 PHE A 173 ASP A 177 1 O VAL A 174 N THR A 127 SHEET 1 AA2 5 VAL B 34 ARG B 38 0 SHEET 2 AA2 5 VAL B 86 ASP B 90 1 O ILE B 88 N THR B 37 SHEET 3 AA2 5 LEU B 4 GLU B 9 1 N LEU B 6 O VAL B 87 SHEET 4 AA2 5 LEU B 126 ASP B 131 1 O PHE B 128 N THR B 7 SHEET 5 AA2 5 PHE B 173 ASP B 177 1 O VAL B 174 N THR B 127 LINK OG1 THR A 7 CA CA A 208 1555 1555 2.67 LINK OE2 GLU A 9 CA CA A 208 1555 1555 2.85 LINK OG1 THR A 18 CA CA A 205 1555 1555 3.03 LINK O GLN A 19 CA CA A 209 1555 1555 2.85 LINK OE1 GLN A 19 CA CA A 209 1555 1555 2.72 LINK OH TYR A 62 CA CA A 207 1555 1555 3.01 LINK OG SER A 66 CA CA A 207 1555 1555 3.00 LINK OD2 ASP A 94 CA CA A 208 1555 1555 2.73 LINK O LEU A 130 CA CA A 206 1555 1555 2.77 LINK CA CA A 206 O HOH A 339 1555 1555 2.98 LINK CA CA A 208 O HOH A 364 1555 1555 2.88 LINK CA CA A 209 O HOH A 350 1555 1555 2.59 LINK OG1 THR B 7 CA CA B 209 1555 1555 2.63 LINK OE2 GLU B 9 CA CA B 209 1555 1555 2.71 LINK OG1 THR B 18 CA CA B 207 1555 1555 3.10 LINK O GLN B 19 CA CA B 210 1555 1555 2.85 LINK OE1 GLN B 19 CA CA B 210 1555 1555 2.70 LINK O PHE B 65 CA CA B 211 1555 1555 2.86 LINK OD2 ASP B 68 CA CA B 211 1555 1555 2.63 LINK OD2 ASP B 94 CA CA B 209 1555 1555 2.70 LINK OH TYR B 99 CA CA B 208 1555 1555 2.81 LINK CA CA B 207 O HOH B 396 1555 1555 2.61 LINK CA CA B 209 O HOH B 384 1555 1555 2.96 CISPEP 1 GLU A 39 PRO A 40 0 -6.40 CISPEP 2 GLU B 39 PRO B 40 0 -2.34 CISPEP 3 LEU B 197 PRO B 198 0 17.98 SITE 1 AC1 6 GLU A 169 PRO A 170 GLY A 171 ARG A 172 SITE 2 AC1 6 HOH A 326 HOH B 360 SITE 1 AC2 2 LYS A 123 HOH A 364 SITE 1 AC3 5 GLY A 13 GLY A 15 LYS A 16 THR A 17 SITE 2 AC3 5 CA A 205 SITE 1 AC4 5 PHE A 5 ARG A 125 ARG A 142 HOH A 310 SITE 2 AC4 5 HOH A 377 SITE 1 AC5 4 GLY A 15 THR A 17 THR A 18 CL A 203 SITE 1 AC6 4 GLY A 10 LEU A 11 LEU A 130 HOH A 339 SITE 1 AC7 3 TYR A 62 SER A 66 ARG A 69 SITE 1 AC8 5 THR A 7 GLU A 9 TYR A 92 ASP A 94 SITE 2 AC8 5 HOH A 364 SITE 1 AC9 5 GLN A 19 ARG A 22 LEU A 23 ILE A 189 SITE 2 AC9 5 HOH A 350 SITE 1 AD1 3 LYS B 123 PRO B 124 HOH B 384 SITE 1 AD2 7 HOH A 334 GLU B 169 PRO B 170 GLY B 171 SITE 2 AD2 7 ARG B 172 HOH B 324 HOH B 400 SITE 1 AD3 3 TYR B 62 SER B 66 ARG B 69 SITE 1 AD4 4 GLY B 13 GLY B 15 LYS B 16 CA B 207 SITE 1 AD5 5 ARG B 22 ARG B 139 GLN B 190 CL B 206 SITE 2 AD5 5 HOH B 345 SITE 1 AD6 4 PHE B 26 ALA B 136 ARG B 140 CL B 205 SITE 1 AD7 5 GLY B 15 THR B 17 THR B 18 CL B 204 SITE 2 AD7 5 HOH B 396 SITE 1 AD8 3 ASP B 12 TYR B 99 ARG B 143 SITE 1 AD9 6 THR B 7 GLU B 9 TYR B 92 ASP B 94 SITE 2 AD9 6 THR B 127 HOH B 384 SITE 1 AE1 3 GLN B 19 LEU B 23 GLN B 190 SITE 1 AE2 4 GLU B 39 PHE B 65 ASP B 68 ARG B 69 SITE 1 AE3 5 GLY B 31 HOH B 303 HOH B 304 HOH B 307 SITE 2 AE3 5 HOH B 316 SITE 1 AE4 5 ALA B 166 ARG B 167 PRO B 170 HOH B 318 SITE 2 AE4 5 HOH B 320 SITE 1 AE5 9 HIS A 192 LEU B 126 PRO B 170 GLY B 171 SITE 2 AE5 9 PHE B 173 VAL B 174 HOH B 338 HOH B 339 SITE 3 AE5 9 HOH B 365 SITE 1 AE6 3 PRO A 133 ASP A 177 ARG B 32 CRYST1 39.470 80.210 122.630 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025336 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012467 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008155 0.00000