HEADER HYDROLASE 27-FEB-17 5X7U TITLE TREHALOSE SYNTHASE FROM THERMOBACULUM TERRENUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TREHALOSE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 5-551; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOBACULUM TERRENUM; SOURCE 3 ORGANISM_TAXID: 525904; SOURCE 4 STRAIN: ATCC BAA-798 / YNP1; SOURCE 5 GENE: TTER_0330; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TREHALOSE SYNATHASE, GH13 FAMILY, COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.SU,F.WANG REVDAT 2 27-MAR-24 5X7U 1 REMARK REVDAT 1 28-FEB-18 5X7U 0 JRNL AUTH J.WANG,X.REN,R.WANG,J.SU,F.WANG JRNL TITL STRUCTURAL CHARACTERISTICS AND FUNCTION OF A NEW KIND OF JRNL TITL 2 THERMOSTABLE TREHALOSE SYNTHASE FROM THERMOBACULUM TERRENUM. JRNL REF J. AGRIC. FOOD CHEM. V. 65 7726 2017 JRNL REFN ESSN 1520-5118 JRNL PMID 28809106 JRNL DOI 10.1021/ACS.JAFC.7B02732 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 34034 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1727 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7990 - 5.7210 1.00 2892 128 0.1704 0.2126 REMARK 3 2 5.7210 - 4.5430 1.00 2739 147 0.1442 0.1676 REMARK 3 3 4.5430 - 3.9693 1.00 2724 146 0.1326 0.1720 REMARK 3 4 3.9693 - 3.6067 1.00 2677 164 0.1536 0.1924 REMARK 3 5 3.6067 - 3.3483 1.00 2672 163 0.1727 0.2174 REMARK 3 6 3.3483 - 3.1510 1.00 2650 146 0.1895 0.2213 REMARK 3 7 3.1510 - 2.9932 1.00 2678 151 0.1916 0.2182 REMARK 3 8 2.9932 - 2.8630 1.00 2668 143 0.1987 0.2613 REMARK 3 9 2.8630 - 2.7528 1.00 2676 130 0.1859 0.2145 REMARK 3 10 2.7528 - 2.6578 1.00 2662 129 0.2009 0.2745 REMARK 3 11 2.6578 - 2.5747 1.00 2659 145 0.2024 0.2558 REMARK 3 12 2.5747 - 2.5011 0.98 2610 135 0.1996 0.2512 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4694 REMARK 3 ANGLE : 0.966 6387 REMARK 3 CHIRALITY : 0.056 652 REMARK 3 PLANARITY : 0.007 838 REMARK 3 DIHEDRAL : 14.717 2778 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5X7U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1300003057. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AICHISR REMARK 200 BEAMLINE : BL2S1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34034 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 63.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LITHIUM SULFATE MONOHYDRATE, 0.1 M REMARK 280 TRIS PH 8.5, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 79.58800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 79.58800 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.40750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 79.58800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.20375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 79.58800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 114.61125 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 79.58800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 114.61125 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 79.58800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.20375 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 79.58800 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 79.58800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 76.40750 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 79.58800 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 79.58800 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 76.40750 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 79.58800 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 114.61125 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 79.58800 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 38.20375 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 79.58800 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 38.20375 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 79.58800 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 114.61125 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 79.58800 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 79.58800 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 76.40750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 805 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 814 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 920 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 947 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ASP A 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ASP A 4 O HOH A 701 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 950 O HOH A 950 10655 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 262 N - CA - CB ANGL. DEV. = 9.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 21 -60.63 -93.22 REMARK 500 ASP A 69 110.25 -162.97 REMARK 500 PRO A 120 -5.34 -58.29 REMARK 500 PHE A 166 -135.64 -113.75 REMARK 500 LEU A 207 -71.31 -55.80 REMARK 500 GLU A 261 -69.62 -126.24 REMARK 500 ALA A 330 57.94 -146.88 REMARK 500 ASN A 338 -128.33 55.52 REMARK 500 LEU A 339 68.58 -106.28 REMARK 500 ASP A 388 -126.99 48.56 REMARK 500 GLN A 481 -120.34 50.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 23 OD1 REMARK 620 2 ASN A 25 OD1 71.7 REMARK 620 3 ASP A 27 OD1 75.9 78.7 REMARK 620 4 SER A 29 O 73.7 144.8 87.4 REMARK 620 5 ASP A 31 OD2 88.8 89.4 162.9 95.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 604 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 104 OD1 REMARK 620 2 ASP A 172 OD2 88.3 REMARK 620 3 TYR A 206 O 65.4 107.8 REMARK 620 4 LEU A 207 O 103.5 165.4 70.5 REMARK 620 5 GLU A 209 OE1 136.6 84.7 76.2 80.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 604 DBREF 5X7U A 2 548 UNP D1CE96 D1CE96_THET1 5 551 SEQADV 5X7U MET A 1 UNP D1CE96 EXPRESSION TAG SEQADV 5X7U HIS A 549 UNP D1CE96 EXPRESSION TAG SEQRES 1 A 549 MET ASN ASP ASP PRO THR TRP TYR LYS ASP ALA ILE ILE SEQRES 2 A 549 TYR GLU VAL GLY VAL ARG CYS PHE PHE ASP SER ASN ASN SEQRES 3 A 549 ASP GLY SER GLY ASP ILE PRO GLY LEU THR ALA LYS LEU SEQRES 4 A 549 ASP TYR ILE GLU SER LEU GLY VAL THR ALA ILE TRP LEU SEQRES 5 A 549 LEU PRO PHE TYR ALA SER PRO LEU LYS ASP GLY GLY TYR SEQRES 6 A 549 ASP ILE SER ASP TYR ARG SER LEU HIS PRO ASP PHE GLY SEQRES 7 A 549 THR ILE GLU ASP PHE LYS VAL PHE LEU ASP GLU ALA HIS SEQRES 8 A 549 ARG ARG GLY ILE ARG VAL ILE THR GLU LEU VAL LEU ASN SEQRES 9 A 549 HIS THR SER ASP GLN HIS GLN TRP PHE ARG GLU ALA ARG SEQRES 10 A 549 SER ASN PRO ASN SER PRO TYR ARG ASP TYR TYR VAL TRP SEQRES 11 A 549 SER ASP THR ASP ASP LYS TYR LYS ASP ALA ARG ILE ILE SEQRES 12 A 549 PHE ILE ASP THR GLU ARG SER ASN TRP THR TRP ASP GLN SEQRES 13 A 549 GLU ALA GLY LYS TYR TYR TRP HIS ARG PHE PHE SER HIS SEQRES 14 A 549 GLN PRO ASP LEU ASN TYR ASP ASN PRO LYS VAL GLN GLN SEQRES 15 A 549 GLU ILE LEU ASP ILE VAL GLY TYR TRP LEU ASP MET GLY SEQRES 16 A 549 VAL ASP GLY LEU ARG LEU ASP ALA VAL PRO TYR LEU TYR SEQRES 17 A 549 GLU ARG GLU GLY THR ASN CYS GLU ASN LEU PRO GLU THR SEQRES 18 A 549 HIS GLU PHE LEU LYS LYS LEU ARG LYS PHE VAL ASP ASP SEQRES 19 A 549 ASN TRP PRO ASN ARG MET LEU LEU ALA GLU ALA ASN GLN SEQRES 20 A 549 TRP PRO GLU ASP VAL VAL ALA TYR PHE GLY ASN GLY ASP SEQRES 21 A 549 GLU CYS HIS MET ALA TYR HIS PHE PRO ILE MET PRO ARG SEQRES 22 A 549 MET TYR MET ALA LEU ARG ARG GLU ASP ARG HIS PRO ILE SEQRES 23 A 549 THR GLU ILE LEU ARG ARG THR PRO PRO ILE PRO GLU THR SEQRES 24 A 549 CYS GLN TRP ALA LEU PHE LEU ARG ASN HIS ASP GLU LEU SEQRES 25 A 549 THR LEU GLU MET VAL THR ASP GLU GLU ARG ASP TYR MET SEQRES 26 A 549 TYR HIS GLU TYR ALA LYS ASP PRO ARG MET ARG LEU ASN SEQRES 27 A 549 LEU GLY ILE ARG ARG ARG LEU ALA PRO LEU LEU ASP ASN SEQRES 28 A 549 SER GLU ARG ARG ILE GLN LEU MET HIS LEU LEU LEU PHE SEQRES 29 A 549 THR LEU PRO GLY THR PRO ILE ILE TYR TYR GLY ASP GLU SEQRES 30 A 549 ILE GLY MET GLY ASP ASN VAL TYR LEU GLY ASP ARG ASP SEQRES 31 A 549 GLY VAL ARG THR PRO MET GLN TRP SER GLY ASP ARG ASN SEQRES 32 A 549 ALA GLY PHE SER ARG ALA ASN PRO GLN ALA LEU TYR LEU SEQRES 33 A 549 PRO PRO ILE ARG ASP PRO VAL PHE THR TYR GLU ALA VAL SEQRES 34 A 549 ASN VAL GLU ALA GLN GLU GLN VAL PRO THR SER LEU LEU SEQRES 35 A 549 ASN TRP MET LYS ARG THR ILE GLN ILE ARG LYS LYS TYR SEQRES 36 A 549 PRO VAL PHE GLY ARG GLY SER ILE ARG PHE LEU GLN PRO SEQRES 37 A 549 SER ASN ARG ALA VAL LEU ALA TYR ILE ARG GLN TYR GLN SEQRES 38 A 549 ASP THR THR ILE LEU CYS ALA CYS ASN LEU SER ARG PHE SEQRES 39 A 549 CYS GLN ALA ALA GLU LEU ASP LEU SER ASP PHE LYS GLY SEQRES 40 A 549 LEU TYR PRO VAL GLU LEU TYR GLY LYS THR VAL PHE PRO SEQRES 41 A 549 GLN ILE GLY GLU LEU PRO TYR LEU LEU THR PHE GLY PRO SEQRES 42 A 549 HIS VAL PHE TYR TRP PHE GLU LEU LYS PRO GLN GLU GLN SEQRES 43 A 549 LEU PRO HIS HET TRS A 600 8 HET MG A 601 1 HET MG A 602 1 HET MG A 603 1 HET MG A 604 1 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM MG MAGNESIUM ION HETSYN TRS TRIS BUFFER FORMUL 2 TRS C4 H12 N O3 1+ FORMUL 3 MG 4(MG 2+) FORMUL 7 HOH *250(H2 O) HELIX 1 AA1 THR A 6 ALA A 11 5 6 HELIX 2 AA2 GLY A 17 PHE A 22 1 6 HELIX 3 AA3 ASP A 31 LYS A 38 1 8 HELIX 4 AA4 LYS A 38 GLY A 46 1 9 HELIX 5 AA5 PRO A 75 GLY A 78 5 4 HELIX 6 AA6 THR A 79 ARG A 93 1 15 HELIX 7 AA7 HIS A 110 ARG A 117 1 8 HELIX 8 AA8 TYR A 124 TYR A 128 5 5 HELIX 9 AA9 ASN A 177 MET A 194 1 18 HELIX 10 AB1 ALA A 203 LEU A 207 5 5 HELIX 11 AB2 LEU A 218 TRP A 236 1 19 HELIX 12 AB3 TRP A 248 ALA A 254 1 7 HELIX 13 AB4 TYR A 255 GLY A 257 5 3 HELIX 14 AB5 PRO A 269 GLU A 281 1 13 HELIX 15 AB6 ARG A 283 ARG A 292 1 10 HELIX 16 AB7 THR A 318 ALA A 330 1 13 HELIX 17 AB8 ASP A 332 ARG A 336 5 5 HELIX 18 AB9 ARG A 344 LEU A 349 1 6 HELIX 19 AC1 SER A 352 LEU A 366 1 15 HELIX 20 AC2 GLY A 375 GLY A 379 5 5 HELIX 21 AC3 ARG A 389 ARG A 393 5 5 HELIX 22 AC4 ASP A 401 PHE A 406 5 6 HELIX 23 AC5 ASN A 410 LEU A 414 5 5 HELIX 24 AC6 ASN A 430 GLN A 436 1 7 HELIX 25 AC7 SER A 440 LYS A 454 1 15 HELIX 26 AC8 PRO A 456 GLY A 461 1 6 HELIX 27 AC9 LEU A 502 LYS A 506 5 5 HELIX 28 AD1 PRO A 543 LEU A 547 5 5 SHEET 1 AA1 9 ILE A 13 VAL A 16 0 SHEET 2 AA1 9 ALA A 49 LEU A 52 1 O ALA A 49 N TYR A 14 SHEET 3 AA1 9 ARG A 96 LEU A 101 1 O ILE A 98 N LEU A 52 SHEET 4 AA1 9 GLY A 198 LEU A 201 1 O ARG A 200 N THR A 99 SHEET 5 AA1 9 MET A 240 ALA A 243 1 O LEU A 242 N LEU A 201 SHEET 6 AA1 9 MET A 264 TYR A 266 1 O MET A 264 N ALA A 243 SHEET 7 AA1 9 GLN A 301 PHE A 305 1 O ALA A 303 N ALA A 265 SHEET 8 AA1 9 THR A 369 TYR A 373 1 O THR A 369 N LEU A 304 SHEET 9 AA1 9 ILE A 13 VAL A 16 1 N ILE A 13 O ILE A 372 SHEET 1 AA2 2 TYR A 56 ALA A 57 0 SHEET 2 AA2 2 ASP A 69 LEU A 73 -1 O SER A 72 N ALA A 57 SHEET 1 AA3 3 TRP A 130 SER A 131 0 SHEET 2 AA3 3 LYS A 160 TRP A 163 -1 O TYR A 161 N SER A 131 SHEET 3 AA3 3 TRP A 152 ASP A 155 -1 N THR A 153 O TYR A 162 SHEET 1 AA4 2 LEU A 312 THR A 313 0 SHEET 2 AA4 2 GLY A 340 ILE A 341 -1 O ILE A 341 N LEU A 312 SHEET 1 AA5 6 SER A 462 PHE A 465 0 SHEET 2 AA5 6 VAL A 473 TYR A 480 -1 O ILE A 477 N ARG A 464 SHEET 3 AA5 6 THR A 483 ASN A 490 -1 O ILE A 485 N ARG A 478 SHEET 4 AA5 6 PHE A 536 LYS A 542 -1 O TYR A 537 N ALA A 488 SHEET 5 AA5 6 TYR A 509 GLU A 512 -1 N VAL A 511 O GLU A 540 SHEET 6 AA5 6 THR A 517 VAL A 518 -1 O THR A 517 N GLU A 512 SHEET 1 AA6 2 GLN A 496 LEU A 500 0 SHEET 2 AA6 2 TYR A 527 PHE A 531 -1 O PHE A 531 N GLN A 496 LINK OD1 ASP A 23 MG MG A 601 1555 1555 2.23 LINK OD1 ASN A 25 MG MG A 601 1555 1555 2.30 LINK OD1 ASP A 27 MG MG A 601 1555 1555 2.41 LINK O SER A 29 MG MG A 601 1555 1555 2.26 LINK OD2 ASP A 31 MG MG A 601 1555 1555 2.29 LINK OD1 ASN A 104 MG MG A 604 1555 1555 2.68 LINK OD2 ASP A 172 MG MG A 604 1555 1555 2.32 LINK O TYR A 206 MG MG A 604 1555 1555 2.40 LINK O LEU A 207 MG MG A 604 1555 1555 2.44 LINK OE1 GLU A 209 MG MG A 604 1555 1555 2.37 LINK MG MG A 603 O HOH A 873 1555 1555 2.92 SITE 1 AC1 8 ASP A 62 TYR A 65 HIS A 105 PHE A 166 SITE 2 AC1 8 ASP A 202 GLU A 244 ARG A 389 HOH A 761 SITE 1 AC2 5 ASP A 23 ASN A 25 ASP A 27 SER A 29 SITE 2 AC2 5 ASP A 31 SITE 1 AC3 4 ARG A 283 THR A 287 ARG A 291 ARG A 471 SITE 1 AC4 4 SER A 352 ARG A 355 HIS A 534 HOH A 873 SITE 1 AC5 5 ASN A 104 ASP A 172 TYR A 206 LEU A 207 SITE 2 AC5 5 GLU A 209 CRYST1 159.176 159.176 152.815 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006282 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006282 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006544 0.00000