HEADER ALLERGEN 28-FEB-17 5X7Y TITLE CRYSTAL STRUCTURE OF THE DOG LIPOCALIN ALLERGEN CAN F 6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOCALIN-CAN F 6 ALLERGEN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 16-190; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANIS LUPUS FAMILIARIS; SOURCE 3 ORGANISM_COMMON: DOG; SOURCE 4 ORGANISM_TAXID: 9615; SOURCE 5 GENE: LCN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS LIPOCALIN ALLERGEN, ALLERGEN EXPDTA X-RAY DIFFRACTION AUTHOR K.YAMAMOTO,T.OTANI,K.SUGIURA,M.NAKATSUJI,S.NISHIMURA,T.INUI REVDAT 3 22-NOV-23 5X7Y 1 REMARK REVDAT 2 06-MAR-19 5X7Y 1 JRNL REVDAT 1 04-APR-18 5X7Y 0 JRNL AUTH K.YAMAMOTO,O.ISHIBASHI,K.SUGIURA,M.UBATANI,M.SAKAGUCHI, JRNL AUTH 2 M.NAKATSUJI,S.SHIMAMOTO,M.NODA,S.UCHIYAMA,Y.FUKUTOMI, JRNL AUTH 3 S.NISHIMURA,T.INUI JRNL TITL CRYSTAL STRUCTURE OF THE DOG ALLERGEN CAN F 6 AND JRNL TITL 2 STRUCTURE-BASED IMPLICATIONS OF ITS CROSS-REACTIVITY WITH JRNL TITL 3 THE CAT ALLERGEN FEL D 4. JRNL REF SCI REP V. 9 1503 2019 JRNL REFN ESSN 2045-2322 JRNL PMID 30728436 JRNL DOI 10.1038/S41598-018-38134-W REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 96.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 31249 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1657 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2320 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2030 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5004 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 75 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.333 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.260 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.177 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.367 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.882 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5116 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4795 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6907 ; 1.822 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11012 ; 1.017 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 633 ; 7.317 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 239 ;41.238 ;25.397 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 904 ;14.706 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;11.444 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 787 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5780 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1139 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2544 ; 3.990 ; 4.643 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2543 ; 3.991 ; 4.641 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3173 ; 5.588 ; 6.948 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3174 ; 5.587 ; 6.950 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2572 ; 4.524 ; 4.958 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2572 ; 4.524 ; 4.958 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3735 ; 6.561 ; 7.279 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5484 ; 8.391 ;36.177 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5479 ; 8.393 ;36.183 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5X7Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1300002715. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32931 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 96.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 52.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, REFMAC REMARK 200 STARTING MODEL: 1GM6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M AMMONIUM DIHYDROGENPHOSPHATE, REMARK 280 20% (W/V) PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.80050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.40025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.20075 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 HIS A 1 REMARK 465 GLU A 2 REMARK 465 GLU A 3 REMARK 465 GLU A 4 REMARK 465 ASN A 5 REMARK 465 GLN A 165 REMARK 465 SER A 166 REMARK 465 GLU A 167 REMARK 465 ALA A 168 REMARK 465 ALA A 169 REMARK 465 GLN A 170 REMARK 465 VAL A 171 REMARK 465 SER A 172 REMARK 465 SER A 173 REMARK 465 ALA A 174 REMARK 465 GLU A 175 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 HIS B 1 REMARK 465 GLU B 2 REMARK 465 GLU B 3 REMARK 465 GLU B 4 REMARK 465 ASN B 5 REMARK 465 GLU B 167 REMARK 465 ALA B 168 REMARK 465 ALA B 169 REMARK 465 GLN B 170 REMARK 465 VAL B 171 REMARK 465 SER B 172 REMARK 465 SER B 173 REMARK 465 ALA B 174 REMARK 465 GLU B 175 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 HIS C 1 REMARK 465 GLU C 2 REMARK 465 GLU C 3 REMARK 465 GLU C 4 REMARK 465 GLN C 165 REMARK 465 SER C 166 REMARK 465 GLU C 167 REMARK 465 ALA C 168 REMARK 465 ALA C 169 REMARK 465 GLN C 170 REMARK 465 VAL C 171 REMARK 465 SER C 172 REMARK 465 SER C 173 REMARK 465 ALA C 174 REMARK 465 GLU C 175 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 HIS D 1 REMARK 465 GLU D 2 REMARK 465 GLU D 3 REMARK 465 GLU D 4 REMARK 465 ASN D 5 REMARK 465 ALA D 163 REMARK 465 ARG D 164 REMARK 465 GLN D 165 REMARK 465 SER D 166 REMARK 465 GLU D 167 REMARK 465 ALA D 168 REMARK 465 ALA D 169 REMARK 465 GLN D 170 REMARK 465 VAL D 171 REMARK 465 SER D 172 REMARK 465 SER D 173 REMARK 465 ALA D 174 REMARK 465 GLU D 175 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 11 CG OD1 ND2 REMARK 470 GLU A 48 CG CD OE1 OE2 REMARK 470 LYS A 66 CE NZ REMARK 470 LYS A 76 CD CE NZ REMARK 470 GLU A 78 CG CD OE1 OE2 REMARK 470 LYS A 79 CG CD CE NZ REMARK 470 ASP A 80 CG OD1 OD2 REMARK 470 LYS A 126 NZ REMARK 470 ARG A 139 CD NE CZ NH1 NH2 REMARK 470 LYS B 9 CE NZ REMARK 470 LYS B 31 CD CE NZ REMARK 470 LYS B 45 NZ REMARK 470 LYS B 66 CG CD CE NZ REMARK 470 LYS B 76 CE NZ REMARK 470 GLU B 78 CG CD OE1 OE2 REMARK 470 LYS B 79 CG CD CE NZ REMARK 470 ASP B 80 CG OD1 OD2 REMARK 470 ASP B 88 CG OD1 OD2 REMARK 470 LYS B 132 CG CD CE NZ REMARK 470 LYS B 136 CD CE NZ REMARK 470 ARG B 139 NE CZ NH1 NH2 REMARK 470 LYS B 148 CG CD CE NZ REMARK 470 GLN B 156 CG CD OE1 NE2 REMARK 470 GLN B 162 CG CD OE1 NE2 REMARK 470 GLN B 165 CG CD OE1 NE2 REMARK 470 GLU C 48 CG CD OE1 OE2 REMARK 470 ASN C 52 CG OD1 ND2 REMARK 470 LYS C 76 NZ REMARK 470 ASP C 80 CG OD1 OD2 REMARK 470 GLU C 114 CG CD OE1 OE2 REMARK 470 GLU C 116 CG CD OE1 OE2 REMARK 470 LYS C 126 CD CE NZ REMARK 470 LYS C 132 CD CE NZ REMARK 470 LYS C 148 CG CD CE NZ REMARK 470 ASP D 6 CG OD1 OD2 REMARK 470 VAL D 7 CG1 CG2 REMARK 470 VAL D 8 CG1 CG2 REMARK 470 LYS D 9 CG CD CE NZ REMARK 470 SER D 15 OG REMARK 470 LYS D 16 CG CD CE NZ REMARK 470 LYS D 45 CD CE NZ REMARK 470 LYS D 66 CG CD CE NZ REMARK 470 LYS D 69 CG CD CE NZ REMARK 470 GLU D 78 CG CD OE1 OE2 REMARK 470 LYS D 79 CE NZ REMARK 470 ASP D 80 CG OD1 OD2 REMARK 470 ARG D 94 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 101 CG CD OE1 OE2 REMARK 470 GLU D 116 CD OE1 OE2 REMARK 470 LYS D 126 CD CE NZ REMARK 470 LYS D 132 CD CE NZ REMARK 470 LYS D 136 CG CD CE NZ REMARK 470 ARG D 139 NE CZ NH1 NH2 REMARK 470 LYS D 148 NZ REMARK 470 GLN D 156 CG CD OE1 NE2 REMARK 470 GLN D 162 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 46 OE2 GLU B 48 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG D 41 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 37 -8.03 82.33 REMARK 500 SER A 53 -2.03 73.72 REMARK 500 HIS A 87 115.95 -170.77 REMARK 500 ASP A 102 -56.60 -138.41 REMARK 500 ILE B 24 -64.51 -104.20 REMARK 500 ASN B 37 -9.62 79.27 REMARK 500 SER B 53 10.16 80.24 REMARK 500 ASP B 80 129.45 -6.20 REMARK 500 HIS B 87 114.39 -174.58 REMARK 500 ASP B 102 -54.38 -152.29 REMARK 500 ASN B 112 -168.41 -129.87 REMARK 500 GLU B 145 39.47 70.58 REMARK 500 GLN B 165 90.21 -66.19 REMARK 500 ASN C 37 -15.07 76.79 REMARK 500 HIS C 87 118.45 -165.32 REMARK 500 GLU C 97 141.10 -174.68 REMARK 500 ASP C 102 -58.13 -128.07 REMARK 500 GLU C 114 -78.96 -63.69 REMARK 500 CYS C 160 31.24 70.49 REMARK 500 LYS D 9 11.91 -151.90 REMARK 500 ASN D 37 -0.98 80.82 REMARK 500 SER D 51 26.61 -73.34 REMARK 500 LYS D 79 104.62 177.95 REMARK 500 HIS D 87 117.37 -173.73 REMARK 500 ASP D 88 61.07 38.42 REMARK 500 ASP D 102 -52.35 -137.61 REMARK 500 GLN D 115 117.40 -169.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 312 DISTANCE = 7.83 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG D 201 DBREF 5X7Y A 1 175 UNP H2B3G5 H2B3G5_CANLF 16 190 DBREF 5X7Y B 1 175 UNP H2B3G5 H2B3G5_CANLF 16 190 DBREF 5X7Y C 1 175 UNP H2B3G5 H2B3G5_CANLF 16 190 DBREF 5X7Y D 1 175 UNP H2B3G5 H2B3G5_CANLF 16 190 SEQADV 5X7Y GLY A -1 UNP H2B3G5 EXPRESSION TAG SEQADV 5X7Y SER A 0 UNP H2B3G5 EXPRESSION TAG SEQADV 5X7Y GLY B -1 UNP H2B3G5 EXPRESSION TAG SEQADV 5X7Y SER B 0 UNP H2B3G5 EXPRESSION TAG SEQADV 5X7Y GLY C -1 UNP H2B3G5 EXPRESSION TAG SEQADV 5X7Y SER C 0 UNP H2B3G5 EXPRESSION TAG SEQADV 5X7Y GLY D -1 UNP H2B3G5 EXPRESSION TAG SEQADV 5X7Y SER D 0 UNP H2B3G5 EXPRESSION TAG SEQRES 1 A 177 GLY SER HIS GLU GLU GLU ASN ASP VAL VAL LYS GLY ASN SEQRES 2 A 177 PHE ASP ILE SER LYS ILE SER GLY ASP TRP TYR SER ILE SEQRES 3 A 177 LEU LEU ALA SER ASP ILE LYS GLU LYS ILE GLU GLU ASN SEQRES 4 A 177 GLY SER MET ARG VAL PHE VAL LYS ASP ILE GLU VAL LEU SEQRES 5 A 177 SER ASN SER SER LEU ILE PHE THR MET HIS THR LYS VAL SEQRES 6 A 177 ASN GLY LYS CYS THR LYS ILE SER LEU ILE CYS ASN LYS SEQRES 7 A 177 THR GLU LYS ASP GLY GLU TYR ASP VAL VAL HIS ASP GLY SEQRES 8 A 177 TYR ASN LEU PHE ARG ILE ILE GLU THR ALA TYR GLU ASP SEQRES 9 A 177 TYR ILE ILE PHE HIS LEU ASN ASN VAL ASN GLN GLU GLN SEQRES 10 A 177 GLU PHE GLN LEU MET GLU LEU TYR GLY ARG LYS PRO ASP SEQRES 11 A 177 VAL SER PRO LYS VAL LYS GLU LYS PHE VAL ARG TYR CYS SEQRES 12 A 177 GLN GLY MET GLU ILE PRO LYS GLU ASN ILE LEU ASP LEU SEQRES 13 A 177 THR GLN VAL ASP ARG CYS LEU GLN ALA ARG GLN SER GLU SEQRES 14 A 177 ALA ALA GLN VAL SER SER ALA GLU SEQRES 1 B 177 GLY SER HIS GLU GLU GLU ASN ASP VAL VAL LYS GLY ASN SEQRES 2 B 177 PHE ASP ILE SER LYS ILE SER GLY ASP TRP TYR SER ILE SEQRES 3 B 177 LEU LEU ALA SER ASP ILE LYS GLU LYS ILE GLU GLU ASN SEQRES 4 B 177 GLY SER MET ARG VAL PHE VAL LYS ASP ILE GLU VAL LEU SEQRES 5 B 177 SER ASN SER SER LEU ILE PHE THR MET HIS THR LYS VAL SEQRES 6 B 177 ASN GLY LYS CYS THR LYS ILE SER LEU ILE CYS ASN LYS SEQRES 7 B 177 THR GLU LYS ASP GLY GLU TYR ASP VAL VAL HIS ASP GLY SEQRES 8 B 177 TYR ASN LEU PHE ARG ILE ILE GLU THR ALA TYR GLU ASP SEQRES 9 B 177 TYR ILE ILE PHE HIS LEU ASN ASN VAL ASN GLN GLU GLN SEQRES 10 B 177 GLU PHE GLN LEU MET GLU LEU TYR GLY ARG LYS PRO ASP SEQRES 11 B 177 VAL SER PRO LYS VAL LYS GLU LYS PHE VAL ARG TYR CYS SEQRES 12 B 177 GLN GLY MET GLU ILE PRO LYS GLU ASN ILE LEU ASP LEU SEQRES 13 B 177 THR GLN VAL ASP ARG CYS LEU GLN ALA ARG GLN SER GLU SEQRES 14 B 177 ALA ALA GLN VAL SER SER ALA GLU SEQRES 1 C 177 GLY SER HIS GLU GLU GLU ASN ASP VAL VAL LYS GLY ASN SEQRES 2 C 177 PHE ASP ILE SER LYS ILE SER GLY ASP TRP TYR SER ILE SEQRES 3 C 177 LEU LEU ALA SER ASP ILE LYS GLU LYS ILE GLU GLU ASN SEQRES 4 C 177 GLY SER MET ARG VAL PHE VAL LYS ASP ILE GLU VAL LEU SEQRES 5 C 177 SER ASN SER SER LEU ILE PHE THR MET HIS THR LYS VAL SEQRES 6 C 177 ASN GLY LYS CYS THR LYS ILE SER LEU ILE CYS ASN LYS SEQRES 7 C 177 THR GLU LYS ASP GLY GLU TYR ASP VAL VAL HIS ASP GLY SEQRES 8 C 177 TYR ASN LEU PHE ARG ILE ILE GLU THR ALA TYR GLU ASP SEQRES 9 C 177 TYR ILE ILE PHE HIS LEU ASN ASN VAL ASN GLN GLU GLN SEQRES 10 C 177 GLU PHE GLN LEU MET GLU LEU TYR GLY ARG LYS PRO ASP SEQRES 11 C 177 VAL SER PRO LYS VAL LYS GLU LYS PHE VAL ARG TYR CYS SEQRES 12 C 177 GLN GLY MET GLU ILE PRO LYS GLU ASN ILE LEU ASP LEU SEQRES 13 C 177 THR GLN VAL ASP ARG CYS LEU GLN ALA ARG GLN SER GLU SEQRES 14 C 177 ALA ALA GLN VAL SER SER ALA GLU SEQRES 1 D 177 GLY SER HIS GLU GLU GLU ASN ASP VAL VAL LYS GLY ASN SEQRES 2 D 177 PHE ASP ILE SER LYS ILE SER GLY ASP TRP TYR SER ILE SEQRES 3 D 177 LEU LEU ALA SER ASP ILE LYS GLU LYS ILE GLU GLU ASN SEQRES 4 D 177 GLY SER MET ARG VAL PHE VAL LYS ASP ILE GLU VAL LEU SEQRES 5 D 177 SER ASN SER SER LEU ILE PHE THR MET HIS THR LYS VAL SEQRES 6 D 177 ASN GLY LYS CYS THR LYS ILE SER LEU ILE CYS ASN LYS SEQRES 7 D 177 THR GLU LYS ASP GLY GLU TYR ASP VAL VAL HIS ASP GLY SEQRES 8 D 177 TYR ASN LEU PHE ARG ILE ILE GLU THR ALA TYR GLU ASP SEQRES 9 D 177 TYR ILE ILE PHE HIS LEU ASN ASN VAL ASN GLN GLU GLN SEQRES 10 D 177 GLU PHE GLN LEU MET GLU LEU TYR GLY ARG LYS PRO ASP SEQRES 11 D 177 VAL SER PRO LYS VAL LYS GLU LYS PHE VAL ARG TYR CYS SEQRES 12 D 177 GLN GLY MET GLU ILE PRO LYS GLU ASN ILE LEU ASP LEU SEQRES 13 D 177 THR GLN VAL ASP ARG CYS LEU GLN ALA ARG GLN SER GLU SEQRES 14 D 177 ALA ALA GLN VAL SER SER ALA GLU HET PEG A 201 7 HET PEG B 201 7 HET PEG C 201 7 HET PEG D 201 7 HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 5 PEG 4(C4 H10 O3) FORMUL 9 HOH *75(H2 O) HELIX 1 AA1 ASP A 13 SER A 18 5 6 HELIX 2 AA2 ILE A 30 GLU A 35 5 6 HELIX 3 AA3 SER A 130 MET A 144 1 15 HELIX 4 AA4 PRO A 147 GLU A 149 5 3 HELIX 5 AA5 CYS A 160 ARG A 164 5 5 HELIX 6 AA6 ASP B 13 SER B 18 5 6 HELIX 7 AA7 ILE B 30 ILE B 34 5 5 HELIX 8 AA8 SER B 130 MET B 144 1 15 HELIX 9 AA9 PRO B 147 GLU B 149 5 3 HELIX 10 AB1 ASP C 13 ILE C 17 5 5 HELIX 11 AB2 ILE C 30 ILE C 34 5 5 HELIX 12 AB3 SER C 130 MET C 144 1 15 HELIX 13 AB4 PRO C 147 GLU C 149 5 3 HELIX 14 AB5 THR C 155 VAL C 157 5 3 HELIX 15 AB6 ASP D 13 SER D 18 1 6 HELIX 16 AB7 ILE D 30 ILE D 34 5 5 HELIX 17 AB8 SER D 130 MET D 144 1 15 HELIX 18 AB9 PRO D 147 GLU D 149 5 3 SHEET 1 AA110 GLY A 19 ASP A 20 0 SHEET 2 AA110 PHE A 43 VAL A 49 -1 O ILE A 47 N GLY A 19 SHEET 3 AA110 LEU A 55 VAL A 63 -1 O HIS A 60 N PHE A 43 SHEET 4 AA110 LYS A 66 LYS A 76 -1 O THR A 68 N THR A 61 SHEET 5 AA110 TYR A 83 VAL A 86 -1 O ASP A 84 N ASN A 75 SHEET 6 AA110 TYR A 90 ALA A 99 -1 O PHE A 93 N TYR A 83 SHEET 7 AA110 TYR A 103 VAL A 111 -1 O VAL A 111 N TYR A 90 SHEET 8 AA110 PHE A 117 GLY A 124 -1 O PHE A 117 N ASN A 110 SHEET 9 AA110 TYR A 22 SER A 28 -1 N TYR A 22 O GLY A 124 SHEET 10 AA110 ILE A 151 ASP A 153 -1 O LEU A 152 N LEU A 26 SHEET 1 AA210 GLY B 19 ASP B 20 0 SHEET 2 AA210 PHE B 43 VAL B 49 -1 O ILE B 47 N GLY B 19 SHEET 3 AA210 LEU B 55 VAL B 63 -1 O THR B 58 N ASP B 46 SHEET 4 AA210 LYS B 66 LYS B 76 -1 O CYS B 74 N LEU B 55 SHEET 5 AA210 GLU B 82 VAL B 86 -1 O ASP B 84 N ASN B 75 SHEET 6 AA210 TYR B 90 ALA B 99 -1 O PHE B 93 N TYR B 83 SHEET 7 AA210 TYR B 103 VAL B 111 -1 O ILE B 105 N ILE B 96 SHEET 8 AA210 GLU B 116 GLY B 124 -1 O PHE B 117 N ASN B 110 SHEET 9 AA210 TYR B 22 SER B 28 -1 N ALA B 27 O MET B 120 SHEET 10 AA210 ILE B 151 ASP B 153 -1 O LEU B 152 N LEU B 26 SHEET 1 AA310 GLY C 19 ASP C 20 0 SHEET 2 AA310 PHE C 43 SER C 51 -1 O ILE C 47 N GLY C 19 SHEET 3 AA310 SER C 54 VAL C 63 -1 O HIS C 60 N PHE C 43 SHEET 4 AA310 LYS C 66 LYS C 76 -1 O CYS C 74 N LEU C 55 SHEET 5 AA310 TYR C 83 VAL C 86 -1 O ASP C 84 N ASN C 75 SHEET 6 AA310 TYR C 90 ALA C 99 -1 O PHE C 93 N TYR C 83 SHEET 7 AA310 TYR C 103 VAL C 111 -1 O ILE C 105 N ILE C 96 SHEET 8 AA310 PHE C 117 GLY C 124 -1 O PHE C 117 N ASN C 110 SHEET 9 AA310 TYR C 22 SER C 28 -1 N ALA C 27 O MET C 120 SHEET 10 AA310 ILE C 151 ASP C 153 -1 O LEU C 152 N LEU C 26 SHEET 1 AA410 GLY D 19 ASP D 20 0 SHEET 2 AA410 PHE D 43 VAL D 49 -1 O ILE D 47 N GLY D 19 SHEET 3 AA410 SER D 54 VAL D 63 -1 O THR D 58 N LYS D 45 SHEET 4 AA410 LYS D 66 LYS D 76 -1 O CYS D 74 N LEU D 55 SHEET 5 AA410 GLU D 82 VAL D 86 -1 O ASP D 84 N ASN D 75 SHEET 6 AA410 TYR D 90 ALA D 99 -1 O PHE D 93 N TYR D 83 SHEET 7 AA410 TYR D 103 VAL D 111 -1 O ILE D 105 N ILE D 96 SHEET 8 AA410 PHE D 117 GLY D 124 -1 O PHE D 117 N ASN D 110 SHEET 9 AA410 TYR D 22 SER D 28 -1 N ALA D 27 O MET D 120 SHEET 10 AA410 ILE D 151 ASP D 153 -1 O LEU D 152 N LEU D 26 SSBOND 1 CYS A 67 CYS A 160 1555 1555 2.08 SSBOND 2 CYS B 67 CYS B 160 1555 1555 2.07 SSBOND 3 CYS C 67 CYS C 160 1555 1555 2.14 SSBOND 4 CYS D 67 CYS D 160 1555 1555 2.07 SITE 1 AC1 5 MET A 40 VAL A 42 PHE A 57 LEU A 108 SITE 2 AC1 5 GLU A 121 SITE 1 AC2 3 MET B 40 VAL B 42 GLU B 121 SITE 1 AC3 4 MET C 40 VAL C 42 PHE C 57 GLU C 121 SITE 1 AC4 4 MET D 40 VAL D 42 GLU D 121 TYR D 123 CRYST1 96.604 96.604 85.601 90.00 90.00 90.00 P 41 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010352 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010352 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011682 0.00000