HEADER OXIDOREDUCTASE 06-MAR-17 5X9D TITLE CRYSTAL STRUCTURE OF HOMOSERINE DEHYDROGENASE IN COMPLEX WITH L- TITLE 2 CYSTEINE AND NAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMOSERINE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS TOKODAII (STRAIN DSM 16993 / JCM SOURCE 3 10545 / NBRC 100140 / 7); SOURCE 4 ORGANISM_TAXID: 273063; SOURCE 5 STRAIN: DSM 16993 / JCM 10545 / NBRC 100140 / 7; SOURCE 6 GENE: HOM, ST1519, STK_15190; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET101 KEYWDS OXIDOREDUCTASE, COMPLEX, INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR M.GOTO,K.OGATA,R.KANEKO,K.YOSHIMUNE REVDAT 2 22-NOV-23 5X9D 1 REMARK REVDAT 1 02-MAY-18 5X9D 0 JRNL AUTH K.OGATA,Y.YAJIMA,S.NAKAMURA,R.KANEKO,M.GOTO,T.OHSHIMA, JRNL AUTH 2 K.YOSHIMUNE JRNL TITL INHIBITION OF HOMOSERINE DEHYDROGENASE BY FORMATION OF A JRNL TITL 2 CYSTEINE-NAD COVALENT COMPLEX JRNL REF SCI REP V. 8 5749 2018 JRNL REFN ESSN 2045-2322 JRNL PMID 29636528 JRNL DOI 10.1038/S41598-018-24063-1 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17691 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 931 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1301 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2286 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 126 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.57000 REMARK 3 B22 (A**2) : 0.57000 REMARK 3 B33 (A**2) : -1.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.228 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.191 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.150 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.914 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2386 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3238 ; 1.452 ; 2.013 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 299 ; 5.978 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;40.077 ;25.053 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 397 ;15.579 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;14.994 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 385 ; 0.147 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1746 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5X9D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1300003136. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18629 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 75.074 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.93200 REMARK 200 R SYM FOR SHELL (I) : 0.93200 REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4YDR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, DI-AMMONIUM TARTRATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 53.08550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 53.08550 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.43700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 53.08550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 14.21850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 53.08550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.65550 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 53.08550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.08550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.43700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 53.08550 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 42.65550 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 53.08550 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 14.21850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 677 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 227 REMARK 465 ASP A 254 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 62 CG CD OE1 OE2 REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 LYS A 167 CG CD CE NZ REMARK 470 LYS A 176 CG CD CE NZ REMARK 470 LYS A 219 CG CD CE NZ REMARK 470 ARG A 225 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 229 CG CD CE NZ REMARK 470 LYS A 242 CG CD CE NZ REMARK 470 LYS A 247 CG CD CE NZ REMARK 470 GLN A 253 CG CD OE1 NE2 REMARK 470 ASN A 259 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 8 44.20 -146.97 REMARK 500 LEU A 43 42.93 -96.84 REMARK 500 ALA A 108 42.62 -141.11 REMARK 500 PHE A 125 26.81 -149.05 REMARK 500 SER A 131 -102.59 49.13 REMARK 500 SER A 135 -71.56 -139.92 REMARK 500 LEU A 142 57.51 -117.91 REMARK 500 LYS A 229 -44.07 65.92 REMARK 500 LYS A 242 -64.01 -94.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 80F A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TLA A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YDR RELATED DB: PDB REMARK 900 RELATED ID: 5AVO RELATED DB: PDB DBREF 5X9D A 1 304 UNP F9VNG5 F9VNG5_SULTO 1 304 SEQRES 1 A 304 MET LYS LEU LEU LEU PHE GLY TYR GLY ASN VAL GLY LYS SEQRES 2 A 304 ALA PHE ARG LYS LEU LEU HIS GLU LYS ARG SER PRO GLU SEQRES 3 A 304 LEU ASN ASP VAL ILE ILE GLY GLY ILE VAL THR ARG ARG SEQRES 4 A 304 GLY ILE MET LEU GLN ASP LYS GLU ASP PHE THR PRO ASP SEQRES 5 A 304 LEU GLU GLY ASP VAL PHE LYS ALA PHE GLU LYS ILE LYS SEQRES 6 A 304 PRO ASP ILE ILE VAL ASP VAL SER SER ALA ASN TYR ASN SEQRES 7 A 304 ASN GLY GLU PRO SER LEU SER LEU TYR LYS GLU ALA ILE SEQRES 8 A 304 LYS ASP GLY VAL ASN ILE ILE THR THR ASN LYS ALA PRO SEQRES 9 A 304 LEU ALA LEU ALA PHE ASN GLU ILE PHE SER LEU ALA ARG SEQRES 10 A 304 SER LYS GLY VAL LYS ILE GLY PHE GLN GLY THR VAL MET SEQRES 11 A 304 SER GLY THR PRO SER ILE ASN LEU TYR ARG VAL LEU PRO SEQRES 12 A 304 GLY SER ARG VAL ILE LYS ILE ARG GLY ILE LEU ASN GLY SEQRES 13 A 304 THR THR ASN PHE ILE LEU THR LEU MET ASN LYS GLY VAL SEQRES 14 A 304 SER PHE GLU GLU ALA LEU LYS GLU ALA GLN ARG ARG GLY SEQRES 15 A 304 TYR ALA GLU GLU ASP PRO THR LEU ASP ILE ASN GLY PHE SEQRES 16 A 304 ASP ALA ALA ALA LYS ILE THR ILE LEU ALA ASN PHE MET SEQRES 17 A 304 ILE GLY ASN SER VAL THR ILE LYS ASP VAL LYS PHE GLU SEQRES 18 A 304 GLY ILE ASN ARG ASP LEU PRO LYS ASN GLU LYS ILE LYS SEQRES 19 A 304 LEU ILE ALA TYR ALA ASP GLU LYS GLU VAL TRP VAL LYS SEQRES 20 A 304 PRO LEU PRO ILE SER GLN ASP ASP PRO LEU TYR ASN VAL SEQRES 21 A 304 ASP GLY VAL GLU ASN ALA LEU GLU ILE THR THR ASP ILE SEQRES 22 A 304 GLN SER ILE LEU ILE ARG GLY PRO GLY ALA GLY PRO VAL SEQRES 23 A 304 ASN ALA ALA TYR GLY ALA LEU SER ASP LEU ILE LEU LEU SEQRES 24 A 304 LYS ARG ASP CYS LEU HET 80F A 501 51 HET TLA A 502 10 HETNAM 80F (2R)-3-[[(4S)-3-AMINOCARBONYL-1-[(2R,3R,4S,5R)-5- HETNAM 2 80F [[[[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4- HETNAM 3 80F BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL- HETNAM 4 80F PHOSPHORYL]OXY-OXIDANYL-PHOSPHORYL]OXYMETHYL]-3,4- HETNAM 5 80F BIS(OXIDANYL)OXOLAN-2-YL]-4H-PYRIDIN-4-YL]SULFANYL]-2- HETNAM 6 80F AZANYL-PROPANOIC ACID HETNAM TLA L(+)-TARTARIC ACID FORMUL 2 80F C24 H34 N8 O16 P2 S FORMUL 3 TLA C4 H6 O6 FORMUL 4 HOH *126(H2 O) HELIX 1 AA1 GLY A 9 LYS A 22 1 14 HELIX 2 AA2 ASP A 56 LYS A 65 1 10 HELIX 3 AA3 PRO A 82 ASP A 93 1 12 HELIX 4 AA4 LYS A 102 GLY A 120 1 19 HELIX 5 AA5 PHE A 125 VAL A 129 5 5 HELIX 6 AA6 SER A 135 VAL A 141 1 7 HELIX 7 AA7 ASN A 155 ASN A 166 1 12 HELIX 8 AA8 SER A 170 GLY A 182 1 13 HELIX 9 AA9 PRO A 188 ASN A 193 1 6 HELIX 10 AB1 GLY A 194 MET A 208 1 15 HELIX 11 AB2 THR A 214 VAL A 218 5 5 HELIX 12 AB3 GLY A 284 ARG A 301 1 18 SHEET 1 AA1 6 GLY A 40 MET A 42 0 SHEET 2 AA1 6 ILE A 31 THR A 37 -1 N ILE A 35 O MET A 42 SHEET 3 AA1 6 LYS A 2 PHE A 6 1 N LEU A 3 O ILE A 31 SHEET 4 AA1 6 ILE A 68 ASP A 71 1 O VAL A 70 N LEU A 4 SHEET 5 AA1 6 ASN A 96 THR A 99 1 O ILE A 98 N ASP A 71 SHEET 6 AA1 6 ILE A 123 GLY A 124 1 O GLY A 124 N ILE A 97 SHEET 1 AA2 6 LYS A 219 PHE A 220 0 SHEET 2 AA2 6 VAL A 244 PRO A 250 1 O VAL A 246 N LYS A 219 SHEET 3 AA2 6 ILE A 233 ASP A 240 -1 N TYR A 238 O TRP A 245 SHEET 4 AA2 6 VAL A 147 ILE A 153 -1 N ILE A 150 O ALA A 239 SHEET 5 AA2 6 GLU A 264 THR A 271 -1 O GLU A 268 N ARG A 151 SHEET 6 AA2 6 SER A 275 PRO A 281 -1 O GLY A 280 N ASN A 265 SSBOND 1 CYS A 303 CYS A 303 1555 6555 2.04 CISPEP 1 SER A 24 PRO A 25 0 1.74 CISPEP 2 GLU A 81 PRO A 82 0 1.48 SITE 1 AC1 45 PHE A 6 GLY A 7 TYR A 8 GLY A 9 SITE 2 AC1 45 ASN A 10 VAL A 11 THR A 37 ARG A 38 SITE 3 AC1 45 VAL A 72 SER A 73 SER A 74 PRO A 82 SITE 4 AC1 45 THR A 100 ASN A 101 LYS A 102 GLY A 127 SITE 5 AC1 45 SER A 131 ASN A 155 GLY A 156 THR A 157 SITE 6 AC1 45 GLY A 182 TYR A 183 ALA A 184 GLU A 185 SITE 7 AC1 45 GLU A 186 ASP A 191 ASP A 196 LYS A 200 SITE 8 AC1 45 ALA A 283 GLY A 284 PRO A 285 ALA A 288 SITE 9 AC1 45 TLA A 502 HOH A 601 HOH A 602 HOH A 604 SITE 10 AC1 45 HOH A 615 HOH A 637 HOH A 642 HOH A 643 SITE 11 AC1 45 HOH A 644 HOH A 662 HOH A 669 HOH A 690 SITE 12 AC1 45 HOH A 697 SITE 1 AC2 10 HIS A 20 ARG A 23 THR A 37 ARG A 38 SITE 2 AC2 10 ARG A 39 80F A 501 HOH A 604 HOH A 609 SITE 3 AC2 10 HOH A 628 HOH A 651 CRYST1 106.171 106.171 56.874 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009419 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009419 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017583 0.00000