HEADER ONCOPROTEIN 09-MAR-17 5X9S TITLE CRYSTAL STRUCTURE OF FULLY MODIFIED H-RAS-GPPNHP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-166; COMPND 5 SYNONYM: H-RAS-1,HA-RAS,TRANSFORMING PROTEIN P21,C-H-RAS,P21RAS; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ONCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.MATSUMOTO,H.KE,Y.MURASHIMA,H.TANIGUCHI-TAMURA,R.MIYAMOTO, AUTHOR 2 Y.YOSHIKAWA,T.KUMASAKA,E.MIZOHATA,H.EDAMATSU,T.KATAOKA REVDAT 3 22-NOV-23 5X9S 1 LINK REVDAT 2 27-SEP-17 5X9S 1 JRNL REVDAT 1 30-AUG-17 5X9S 0 JRNL AUTH H.KE,S.MATSUMOTO,Y.MURASHIMA,H.TANIGUCHI-TAMURA,R.MIYAMOTO, JRNL AUTH 2 Y.YOSHIKAWA,C.TSUDA,T.KUMASAKA,E.MIZOHATA,H.EDAMATSU, JRNL AUTH 3 T.KATAOKA JRNL TITL STRUCTURAL BASIS FOR INTRAMOLECULAR INTERACTION OF JRNL TITL 2 POST-TRANSLATIONALLY MODIFIED H-RASGTP PREPARED BY PROTEIN JRNL TITL 3 LIGATION JRNL REF FEBS LETT. V. 591 2470 2017 JRNL REFN ISSN 1873-3468 JRNL PMID 28730604 JRNL DOI 10.1002/1873-3468.12759 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 6878 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 331 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 491 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1980 REMARK 3 BIN FREE R VALUE SET COUNT : 25 REMARK 3 BIN FREE R VALUE : 0.2140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1301 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 29 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.460 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.267 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.161 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.049 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1355 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1252 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1841 ; 1.319 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2870 ; 0.900 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 165 ; 5.992 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 66 ;42.671 ;24.394 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 229 ;13.148 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;18.402 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 207 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1538 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 310 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 663 ; 1.041 ; 2.233 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 662 ; 1.040 ; 2.231 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 827 ; 1.808 ; 3.343 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 828 ; 1.808 ; 3.345 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 691 ; 1.144 ; 2.395 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 688 ; 1.146 ; 2.399 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1011 ; 1.966 ; 3.527 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1463 ; 3.340 ;25.427 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1456 ; 3.332 ;25.425 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5X9S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1300003094. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7216 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.15900 REMARK 200 FOR THE DATA SET : 21.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3K8Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CA ACETATE, 20%(W/V) PEG8000, REMARK 280 0.1M MES (PH6.0), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 44.23750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 25.54053 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 44.68233 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 44.23750 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 25.54053 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 44.68233 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 44.23750 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 25.54053 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 44.68233 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 44.23750 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 25.54053 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.68233 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 44.23750 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 25.54053 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 44.68233 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 44.23750 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 25.54053 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.68233 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.08107 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 89.36467 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 51.08107 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 89.36467 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 51.08107 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 89.36467 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 51.08107 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 89.36467 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 51.08107 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 89.36467 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 51.08107 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 89.36467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 204 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 PRO A -4 REMARK 465 LEU A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 ASP A 0 REMARK 465 LEU A 167 REMARK 465 PRO A 168 REMARK 465 LYS A 169 REMARK 465 THR A 170 REMARK 465 GLY A 171 REMARK 465 ASN A 172 REMARK 465 PRO A 173 REMARK 465 PRO A 174 REMARK 465 ASP A 175 REMARK 465 GLU A 176 REMARK 465 SER A 177 REMARK 465 GLY A 178 REMARK 465 PRO A 179 REMARK 465 GLY A 180 REMARK 465 SER A 181 REMARK 465 MET A 182 REMARK 465 SER A 183 REMARK 465 SER A 184 REMARK 465 LYS A 185 REMARK 465 CYS A 186 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 62 CG CD OE1 OE2 REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 MET A 67 CG SD CE REMARK 470 GLN A 70 CG CD OE1 NE2 REMARK 470 ARG A 128 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 135 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 36 -84.70 -92.72 REMARK 500 SER A 65 37.55 -90.97 REMARK 500 LYS A 117 33.84 74.78 REMARK 500 ARG A 149 -3.11 78.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 83.5 REMARK 620 3 GNP A 205 O2B 83.2 166.6 REMARK 620 4 GNP A 205 O1G 174.6 92.6 100.8 REMARK 620 5 HOH A 308 O 89.2 93.4 85.1 94.8 REMARK 620 6 HOH A 310 O 87.6 93.7 87.0 88.9 171.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 28 O REMARK 620 2 ASP A 30 OD1 96.0 REMARK 620 3 GLU A 31 OE1 93.4 83.9 REMARK 620 4 ASP A 33 OD1 81.7 81.2 12.4 REMARK 620 5 ASP A 33 OD2 78.6 87.8 14.9 7.0 REMARK 620 6 HOH A 320 O 176.1 86.6 83.9 95.9 98.5 REMARK 620 7 HOH A 327 O 86.1 87.6 171.4 162.4 163.6 96.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 316 O REMARK 620 2 HOH A 316 O 103.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP A 205 DBREF 5X9S A 1 166 UNP P01112 RASH_HUMAN 1 166 SEQADV 5X9S GLY A -5 UNP P01112 EXPRESSION TAG SEQADV 5X9S PRO A -4 UNP P01112 EXPRESSION TAG SEQADV 5X9S LEU A -3 UNP P01112 EXPRESSION TAG SEQADV 5X9S GLY A -2 UNP P01112 EXPRESSION TAG SEQADV 5X9S SER A -1 UNP P01112 EXPRESSION TAG SEQADV 5X9S ASP A 0 UNP P01112 EXPRESSION TAG SEQADV 5X9S LEU A 167 UNP P01112 EXPRESSION TAG SEQADV 5X9S PRO A 168 UNP P01112 EXPRESSION TAG SEQADV 5X9S LYS A 169 UNP P01112 EXPRESSION TAG SEQADV 5X9S THR A 170 UNP P01112 EXPRESSION TAG SEQADV 5X9S GLY A 171 UNP P01112 EXPRESSION TAG SEQADV 5X9S ASN A 172 UNP P01112 EXPRESSION TAG SEQADV 5X9S PRO A 173 UNP P01112 EXPRESSION TAG SEQADV 5X9S PRO A 174 UNP P01112 EXPRESSION TAG SEQADV 5X9S ASP A 175 UNP P01112 EXPRESSION TAG SEQADV 5X9S GLU A 176 UNP P01112 EXPRESSION TAG SEQADV 5X9S SER A 177 UNP P01112 EXPRESSION TAG SEQADV 5X9S GLY A 178 UNP P01112 EXPRESSION TAG SEQADV 5X9S PRO A 179 UNP P01112 EXPRESSION TAG SEQADV 5X9S GLY A 180 UNP P01112 EXPRESSION TAG SEQADV 5X9S SER A 181 UNP P01112 EXPRESSION TAG SEQADV 5X9S MET A 182 UNP P01112 EXPRESSION TAG SEQADV 5X9S SER A 183 UNP P01112 EXPRESSION TAG SEQADV 5X9S SER A 184 UNP P01112 EXPRESSION TAG SEQADV 5X9S LYS A 185 UNP P01112 EXPRESSION TAG SEQADV 5X9S CYS A 186 UNP P01112 EXPRESSION TAG SEQRES 1 A 192 GLY PRO LEU GLY SER ASP MET THR GLU TYR LYS LEU VAL SEQRES 2 A 192 VAL VAL GLY ALA GLY GLY VAL GLY LYS SER ALA LEU THR SEQRES 3 A 192 ILE GLN LEU ILE GLN ASN HIS PHE VAL ASP GLU TYR ASP SEQRES 4 A 192 PRO THR ILE GLU ASP SER TYR ARG LYS GLN VAL VAL ILE SEQRES 5 A 192 ASP GLY GLU THR CYS LEU LEU ASP ILE LEU ASP THR ALA SEQRES 6 A 192 GLY GLN GLU GLU TYR SER ALA MET ARG ASP GLN TYR MET SEQRES 7 A 192 ARG THR GLY GLU GLY PHE LEU CYS VAL PHE ALA ILE ASN SEQRES 8 A 192 ASN THR LYS SER PHE GLU ASP ILE HIS GLN TYR ARG GLU SEQRES 9 A 192 GLN ILE LYS ARG VAL LYS ASP SER ASP ASP VAL PRO MET SEQRES 10 A 192 VAL LEU VAL GLY ASN LYS CYS ASP LEU ALA ALA ARG THR SEQRES 11 A 192 VAL GLU SER ARG GLN ALA GLN ASP LEU ALA ARG SER TYR SEQRES 12 A 192 GLY ILE PRO TYR ILE GLU THR SER ALA LYS THR ARG GLN SEQRES 13 A 192 GLY VAL GLU ASP ALA PHE TYR THR LEU VAL ARG GLU ILE SEQRES 14 A 192 ARG GLN HIS LEU PRO LYS THR GLY ASN PRO PRO ASP GLU SEQRES 15 A 192 SER GLY PRO GLY SER MET SER SER LYS CYS HET MG A 201 1 HET CA A 202 1 HET CA A 203 1 HET CA A 204 1 HET GNP A 205 32 HETNAM MG MAGNESIUM ION HETNAM CA CALCIUM ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER FORMUL 2 MG MG 2+ FORMUL 3 CA 3(CA 2+) FORMUL 6 GNP C10 H17 N6 O13 P3 FORMUL 7 HOH *29(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 MET A 67 ARG A 73 1 7 HELIX 3 AA3 ASN A 86 ASP A 105 1 20 HELIX 4 AA4 GLU A 126 GLY A 138 1 13 HELIX 5 AA5 GLY A 151 HIS A 166 1 16 SHEET 1 AA1 6 GLU A 37 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 THR A 58 -1 O ASP A 57 N ASP A 38 SHEET 3 AA1 6 THR A 2 GLY A 10 1 N LEU A 6 O LEU A 56 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 7 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 TYR A 141 GLU A 143 1 O ILE A 142 N LEU A 113 LINK OG SER A 17 MG MG A 201 1555 1555 2.04 LINK O PHE A 28 CA CA A 202 1555 1555 2.29 LINK OD1 ASP A 30 CA CA A 202 1555 1555 2.44 LINK OE1 GLU A 31 CA CA A 202 1555 18444 2.34 LINK OD1 ASP A 33 CA CA A 202 1555 18444 2.43 LINK OD2 ASP A 33 CA CA A 202 1555 18444 2.66 LINK OG1 THR A 35 MG MG A 201 1555 1555 1.97 LINK MG MG A 201 O2B GNP A 205 1555 1555 1.99 LINK MG MG A 201 O1G GNP A 205 1555 1555 2.01 LINK MG MG A 201 O HOH A 308 1555 1555 1.95 LINK MG MG A 201 O HOH A 310 1555 1555 1.86 LINK CA CA A 202 O HOH A 320 1555 18444 2.39 LINK CA CA A 202 O HOH A 327 1555 18444 2.52 LINK CA CA A 203 O HOH A 314 1555 2555 2.36 LINK CA CA A 204 O HOH A 316 1555 1555 2.56 LINK CA CA A 204 O HOH A 316 1555 3555 2.51 SITE 1 AC1 5 SER A 17 THR A 35 GNP A 205 HOH A 308 SITE 2 AC1 5 HOH A 310 SITE 1 AC2 6 PHE A 28 ASP A 30 GLU A 31 ASP A 33 SITE 2 AC2 6 HOH A 320 HOH A 327 SITE 1 AC3 1 HOH A 314 SITE 1 AC4 1 HOH A 316 SITE 1 AC5 28 GLY A 12 GLY A 13 VAL A 14 GLY A 15 SITE 2 AC5 28 LYS A 16 SER A 17 ALA A 18 PHE A 28 SITE 3 AC5 28 VAL A 29 ASP A 30 GLU A 31 TYR A 32 SITE 4 AC5 28 PRO A 34 THR A 35 GLY A 60 GLN A 61 SITE 5 AC5 28 ASN A 116 LYS A 117 ASP A 119 LEU A 120 SITE 6 AC5 28 SER A 145 ALA A 146 LYS A 147 MG A 201 SITE 7 AC5 28 HOH A 308 HOH A 310 HOH A 311 HOH A 323 CRYST1 88.475 88.475 134.047 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011303 0.006526 0.000000 0.00000 SCALE2 0.000000 0.013051 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007460 0.00000