HEADER DNA BINDING PROTEIN 10-MAR-17 5X9Y TITLE CRYSTAL STRUCTURE OF THE ATPASE DOMAIN FROM BACTERIAL MISMATCH REPAIR TITLE 2 ENDONUCLEASE AQUIFEX AEOLICUS MUTL. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA MISMATCH REPAIR PROTEIN MUTL; COMPND 3 CHAIN: C, A, B; COMPND 4 FRAGMENT: UNP RESIDUES 9-315; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: RESIDUES 1-11, 41-43, 66-91, 187-190, 273-282, AND COMPND 7 302-308 OF CHAIN A-C ARE DISORDERED IN THE CRYSTAL STRUCTURE. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS (STRAIN VF5); SOURCE 3 ORGANISM_TAXID: 224324; SOURCE 4 STRAIN: VF5; SOURCE 5 GENE: MUTL, AQ_1578; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-11A KEYWDS MUTL, DNA MISMATCH REPAIR, ENDONUCLEASE, ATPASE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.FUKUI,T.YANO REVDAT 3 22-NOV-23 5X9Y 1 REMARK REVDAT 2 18-OCT-17 5X9Y 1 REMARK REVDAT 1 30-AUG-17 5X9Y 0 JRNL AUTH K.FUKUI,H.IINO,S.BABA,T.KUMASAKA,S.KURAMITSU,T.YANO JRNL TITL CRYSTAL STRUCTURE AND DNA-BINDING PROPERTY OF THE ATPASE JRNL TITL 2 DOMAIN OF BACTERIAL MISMATCH REPAIR ENDONUCLEASE MUTL FROM JRNL TITL 3 AQUIFEX AEOLICUS JRNL REF BIOCHIM. BIOPHYS. ACTA V.1865 1178 2017 JRNL REFN ISSN 0006-3002 JRNL PMID 28668638 JRNL DOI 10.1016/J.BBAPAP.2017.06.024 REMARK 2 REMARK 2 RESOLUTION. 3.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 20395 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.260 REMARK 3 R VALUE (WORKING SET) : 0.256 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.160 REMARK 3 FREE R VALUE TEST SET COUNT : 1869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0500 - 8.0802 0.99 1621 163 0.2454 0.3086 REMARK 3 2 8.0802 - 6.4198 0.99 1548 158 0.2766 0.2858 REMARK 3 3 6.4198 - 5.6101 0.98 1522 153 0.2589 0.3019 REMARK 3 4 5.6101 - 5.0980 0.98 1498 153 0.2601 0.2934 REMARK 3 5 5.0980 - 4.7331 0.97 1489 147 0.2215 0.2481 REMARK 3 6 4.7331 - 4.4543 0.95 1456 149 0.2254 0.2412 REMARK 3 7 4.4543 - 4.2314 0.97 1456 147 0.2283 0.2751 REMARK 3 8 4.2314 - 4.0473 0.93 1427 149 0.2556 0.3131 REMARK 3 9 4.0473 - 3.8916 0.91 1402 130 0.2739 0.3163 REMARK 3 10 3.8916 - 3.7574 0.88 1318 135 0.2928 0.3219 REMARK 3 11 3.7574 - 3.6400 0.87 1311 134 0.2881 0.3065 REMARK 3 12 3.6400 - 3.5360 0.87 1328 135 0.2915 0.3467 REMARK 3 13 3.5360 - 3.4430 0.77 1150 116 0.3147 0.3657 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6198 REMARK 3 ANGLE : 0.587 8284 REMARK 3 CHIRALITY : 0.043 945 REMARK 3 PLANARITY : 0.004 1044 REMARK 3 DIHEDRAL : 13.714 3143 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -18.7732 19.4752 18.9670 REMARK 3 T TENSOR REMARK 3 T11: 0.7284 T22: 0.7003 REMARK 3 T33: 0.8640 T12: -0.0223 REMARK 3 T13: -0.0326 T23: 0.0343 REMARK 3 L TENSOR REMARK 3 L11: 0.8389 L22: 0.6775 REMARK 3 L33: 2.4077 L12: 0.1452 REMARK 3 L13: 0.9528 L23: 0.4977 REMARK 3 S TENSOR REMARK 3 S11: 0.1430 S12: 0.1771 S13: 0.1464 REMARK 3 S21: -0.1079 S22: -0.2143 S23: 0.3116 REMARK 3 S31: 0.1354 S32: -0.3942 S33: 0.0677 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5X9Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1300003161. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21839 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.440 REMARK 200 RESOLUTION RANGE LOW (A) : 43.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 1.00800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.130 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1BKN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM BIS-TRIS 1.5 M SODIUM CHLORIDE REMARK 280 25% PEG3350, PH 5.50, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 63.46450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.38450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 72.62650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.38450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 63.46450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 72.62650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 63.46450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.62650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 88.38450 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 72.62650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 63.46450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 88.38450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY WAS EXPERIMENTALLY CONFIRMED BY REMARK 300 SAXS AND GEL FILTRATION ANALYSES. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 1 REMARK 465 GLU C 2 REMARK 465 VAL C 3 REMARK 465 ARG C 4 REMARK 465 LYS C 5 REMARK 465 VAL C 6 REMARK 465 ILE C 7 REMARK 465 ALA C 8 REMARK 465 ALA C 9 REMARK 465 GLY C 10 REMARK 465 GLU C 11 REMARK 465 GLY C 42 REMARK 465 GLY C 43 REMARK 465 LYS C 44 REMARK 465 GLN C 67 REMARK 465 GLY C 68 REMARK 465 ALA C 69 REMARK 465 THR C 70 REMARK 465 SER C 71 REMARK 465 LYS C 72 REMARK 465 ILE C 73 REMARK 465 GLU C 74 REMARK 465 THR C 75 REMARK 465 GLU C 76 REMARK 465 LYS C 77 REMARK 465 ASP C 78 REMARK 465 LEU C 79 REMARK 465 MET C 80 REMARK 465 ASN C 81 REMARK 465 ILE C 82 REMARK 465 SER C 83 REMARK 465 THR C 84 REMARK 465 TYR C 85 REMARK 465 GLY C 86 REMARK 465 PHE C 87 REMARK 465 ARG C 88 REMARK 465 GLY C 89 REMARK 465 GLU C 90 REMARK 465 ALA C 91 REMARK 465 LEU C 92 REMARK 465 GLU C 187 REMARK 465 THR C 188 REMARK 465 LEU C 189 REMARK 465 LYS C 190 REMARK 465 ASP C 273 REMARK 465 PHE C 274 REMARK 465 ASN C 275 REMARK 465 VAL C 276 REMARK 465 HIS C 277 REMARK 465 PRO C 278 REMARK 465 LYS C 279 REMARK 465 LYS C 280 REMARK 465 LYS C 281 REMARK 465 GLU C 282 REMARK 465 GLU C 302 REMARK 465 LYS C 303 REMARK 465 PRO C 304 REMARK 465 ILE C 305 REMARK 465 VAL C 306 REMARK 465 ASP C 307 REMARK 465 ILE C 308 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 VAL A 3 REMARK 465 ARG A 4 REMARK 465 LYS A 5 REMARK 465 VAL A 6 REMARK 465 ILE A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 GLY A 10 REMARK 465 GLU A 11 REMARK 465 GLY A 42 REMARK 465 GLY A 43 REMARK 465 LYS A 44 REMARK 465 GLN A 67 REMARK 465 GLY A 68 REMARK 465 ALA A 69 REMARK 465 THR A 70 REMARK 465 SER A 71 REMARK 465 LYS A 72 REMARK 465 ILE A 73 REMARK 465 GLU A 74 REMARK 465 THR A 75 REMARK 465 GLU A 76 REMARK 465 LYS A 77 REMARK 465 ASP A 78 REMARK 465 LEU A 79 REMARK 465 MET A 80 REMARK 465 ASN A 81 REMARK 465 ILE A 82 REMARK 465 SER A 83 REMARK 465 THR A 84 REMARK 465 TYR A 85 REMARK 465 GLY A 86 REMARK 465 PHE A 87 REMARK 465 ARG A 88 REMARK 465 GLY A 89 REMARK 465 GLU A 90 REMARK 465 ALA A 91 REMARK 465 LEU A 92 REMARK 465 GLU A 187 REMARK 465 THR A 188 REMARK 465 LEU A 189 REMARK 465 LYS A 190 REMARK 465 ASP A 273 REMARK 465 PHE A 274 REMARK 465 ASN A 275 REMARK 465 VAL A 276 REMARK 465 HIS A 277 REMARK 465 PRO A 278 REMARK 465 LYS A 279 REMARK 465 LYS A 280 REMARK 465 LYS A 281 REMARK 465 GLU A 282 REMARK 465 GLU A 302 REMARK 465 LYS A 303 REMARK 465 PRO A 304 REMARK 465 ILE A 305 REMARK 465 VAL A 306 REMARK 465 ASP A 307 REMARK 465 ILE A 308 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 VAL B 3 REMARK 465 ARG B 4 REMARK 465 LYS B 5 REMARK 465 VAL B 6 REMARK 465 ILE B 7 REMARK 465 ALA B 8 REMARK 465 ALA B 9 REMARK 465 GLY B 10 REMARK 465 GLU B 11 REMARK 465 GLY B 42 REMARK 465 GLY B 43 REMARK 465 LYS B 44 REMARK 465 GLN B 67 REMARK 465 GLY B 68 REMARK 465 ALA B 69 REMARK 465 THR B 70 REMARK 465 SER B 71 REMARK 465 LYS B 72 REMARK 465 ILE B 73 REMARK 465 GLU B 74 REMARK 465 THR B 75 REMARK 465 GLU B 76 REMARK 465 LYS B 77 REMARK 465 ASP B 78 REMARK 465 LEU B 79 REMARK 465 MET B 80 REMARK 465 ASN B 81 REMARK 465 ILE B 82 REMARK 465 SER B 83 REMARK 465 THR B 84 REMARK 465 TYR B 85 REMARK 465 GLY B 86 REMARK 465 PHE B 87 REMARK 465 ARG B 88 REMARK 465 GLY B 89 REMARK 465 GLU B 90 REMARK 465 ALA B 91 REMARK 465 LEU B 92 REMARK 465 GLU B 187 REMARK 465 THR B 188 REMARK 465 LEU B 189 REMARK 465 LYS B 190 REMARK 465 ASP B 273 REMARK 465 PHE B 274 REMARK 465 ASN B 275 REMARK 465 VAL B 276 REMARK 465 HIS B 277 REMARK 465 PRO B 278 REMARK 465 LYS B 279 REMARK 465 LYS B 280 REMARK 465 LYS B 281 REMARK 465 GLU B 282 REMARK 465 GLU B 302 REMARK 465 LYS B 303 REMARK 465 PRO B 304 REMARK 465 ILE B 305 REMARK 465 VAL B 306 REMARK 465 ASP B 307 REMARK 465 ILE B 308 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR C 233 O GLY C 256 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE C 13 -78.19 -114.98 REMARK 500 GLU C 14 -19.38 72.20 REMARK 500 SER C 96 -7.73 88.49 REMARK 500 GLU C 112 -75.05 -106.51 REMARK 500 ARG C 140 82.25 65.47 REMARK 500 ASP C 141 69.41 64.91 REMARK 500 VAL C 148 -13.03 62.72 REMARK 500 SER C 183 -65.53 -123.68 REMARK 500 GLU C 184 -62.56 -99.35 REMARK 500 LYS C 197 -58.92 -120.14 REMARK 500 GLU C 216 -134.56 54.74 REMARK 500 ASN C 227 -86.17 -128.65 REMARK 500 GLN C 228 28.74 42.76 REMARK 500 ARG C 229 -8.63 60.99 REMARK 500 ASN C 238 -130.82 44.57 REMARK 500 PRO C 269 62.10 -102.41 REMARK 500 MET C 271 -64.54 -100.95 REMARK 500 ILE A 13 -76.94 -114.54 REMARK 500 GLU A 14 -19.68 73.12 REMARK 500 SER A 96 -6.52 87.68 REMARK 500 GLU A 112 -73.89 -108.75 REMARK 500 ARG A 140 79.76 67.38 REMARK 500 ASP A 141 69.48 64.31 REMARK 500 VAL A 148 -16.64 66.49 REMARK 500 SER A 183 -65.92 -120.91 REMARK 500 GLU A 184 -62.20 -98.19 REMARK 500 LYS A 197 -58.06 -127.77 REMARK 500 ARG A 199 -18.75 -45.88 REMARK 500 GLU A 216 -132.92 55.04 REMARK 500 ARG A 226 -156.18 43.49 REMARK 500 LYS A 239 -5.32 67.29 REMARK 500 PRO A 269 61.44 -102.07 REMARK 500 MET A 271 -61.65 -101.47 REMARK 500 ILE B 13 -75.04 -118.87 REMARK 500 GLU B 14 -17.08 74.73 REMARK 500 SER B 96 -5.92 88.79 REMARK 500 ARG B 140 79.17 65.97 REMARK 500 ASP B 141 69.74 64.26 REMARK 500 VAL B 148 -15.03 65.81 REMARK 500 SER B 183 -67.05 -127.78 REMARK 500 GLU B 184 -62.41 -96.52 REMARK 500 GLU B 216 -130.61 60.56 REMARK 500 ASN B 227 -166.53 -123.58 REMARK 500 GLN B 228 84.45 66.76 REMARK 500 ASN B 238 -127.77 40.15 REMARK 500 THR B 259 70.51 64.30 REMARK 500 PRO B 269 60.97 -101.01 REMARK 500 ALA B 299 -119.23 55.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER C 94 ILE C 95 145.06 REMARK 500 ILE C 95 SER C 96 -101.51 REMARK 500 SER C 96 SER C 97 137.40 REMARK 500 SER C 97 VAL C 98 139.47 REMARK 500 VAL C 98 SER C 99 47.86 REMARK 500 VAL C 148 ARG C 149 142.80 REMARK 500 GLU C 184 GLY C 185 138.48 REMARK 500 ILE C 237 ASN C 238 -139.22 REMARK 500 PHE C 270 MET C 271 -117.50 REMARK 500 LYS C 287 GLU C 288 -144.56 REMARK 500 ILE A 39 VAL A 40 149.96 REMARK 500 LYS A 50 ASP A 51 -149.72 REMARK 500 SER A 94 ILE A 95 144.91 REMARK 500 ILE A 95 SER A 96 -104.10 REMARK 500 SER A 96 SER A 97 134.00 REMARK 500 SER A 97 VAL A 98 143.25 REMARK 500 VAL A 98 SER A 99 53.02 REMARK 500 VAL A 139 ARG A 140 148.01 REMARK 500 PHE A 223 VAL A 224 -149.29 REMARK 500 VAL A 224 SER A 225 -122.85 REMARK 500 ASN A 227 GLN A 228 -133.27 REMARK 500 TYR A 257 LYS A 258 146.08 REMARK 500 PHE A 270 MET A 271 -114.22 REMARK 500 LYS A 287 GLU A 288 -148.89 REMARK 500 ILE B 39 VAL B 40 148.05 REMARK 500 SER B 94 ILE B 95 146.38 REMARK 500 ILE B 95 SER B 96 -99.59 REMARK 500 SER B 96 SER B 97 135.41 REMARK 500 SER B 97 VAL B 98 139.32 REMARK 500 VAL B 98 SER B 99 46.34 REMARK 500 LYS B 111 GLU B 112 -147.02 REMARK 500 VAL B 139 ARG B 140 149.43 REMARK 500 VAL B 148 ARG B 149 140.81 REMARK 500 ILE B 237 ASN B 238 -144.26 REMARK 500 LYS B 258 THR B 259 137.59 REMARK 500 PHE B 270 MET B 271 -144.80 REMARK 500 MET B 271 VAL B 272 -137.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG C 401 DBREF 5X9Y C 2 308 UNP O67518 MUTL_AQUAE 9 315 DBREF 5X9Y A 2 308 UNP O67518 MUTL_AQUAE 9 315 DBREF 5X9Y B 2 308 UNP O67518 MUTL_AQUAE 9 315 SEQADV 5X9Y MET C 1 UNP O67518 INITIATING METHIONINE SEQADV 5X9Y MET A 1 UNP O67518 INITIATING METHIONINE SEQADV 5X9Y MET B 1 UNP O67518 INITIATING METHIONINE SEQRES 1 C 308 MET GLU VAL ARG LYS VAL ILE ALA ALA GLY GLU VAL ILE SEQRES 2 C 308 GLU SER PRO VAL ASP VAL VAL LYS GLU LEU VAL GLU ASN SEQRES 3 C 308 SER LEU ASP ALA LYS ALA THR LYS VAL GLU VAL GLU ILE SEQRES 4 C 308 VAL LYS GLY GLY LYS ARG LEU ILE ARG VAL LYS ASP ASN SEQRES 5 C 308 GLY THR GLY ILE HIS PRO GLU ASP VAL GLU LYS VAL VAL SEQRES 6 C 308 LEU GLN GLY ALA THR SER LYS ILE GLU THR GLU LYS ASP SEQRES 7 C 308 LEU MET ASN ILE SER THR TYR GLY PHE ARG GLY GLU ALA SEQRES 8 C 308 LEU TYR SER ILE SER SER VAL SER LYS PHE LYS LEU ARG SEQRES 9 C 308 SER ARG PHE PHE GLN GLU LYS GLU GLY LYS GLU ILE GLU SEQRES 10 C 308 VAL GLU ALA GLY ASN ILE LEU GLY THR ARG ARG VAL GLY SEQRES 11 C 308 MET PRO VAL GLY THR GLU VAL GLU VAL ARG ASP LEU PHE SEQRES 12 C 308 PHE ASN LEU PRO VAL ARG ARG LYS PHE LEU LYS LYS GLU SEQRES 13 C 308 ASP THR GLU ARG ARG LYS VAL LEU GLU LEU ILE LYS GLU SEQRES 14 C 308 TYR ALA LEU THR ASN PRO GLU VAL GLU PHE THR LEU PHE SEQRES 15 C 308 SER GLU GLY ARG GLU THR LEU LYS LEU LYS LYS SER SER SEQRES 16 C 308 LEU LYS GLU ARG VAL GLU GLU VAL PHE GLN THR LYS THR SEQRES 17 C 308 GLU GLU LEU TYR ALA GLU ARG GLU GLY ILE THR LEU ARG SEQRES 18 C 308 ALA PHE VAL SER ARG ASN GLN ARG GLN GLY LYS TYR TYR SEQRES 19 C 308 VAL PHE ILE ASN LYS ARG PRO ILE GLN ASN LYS ASN LEU SEQRES 20 C 308 LYS GLU PHE LEU ARG LYS VAL PHE GLY TYR LYS THR LEU SEQRES 21 C 308 VAL VAL LEU TYR ALA GLU LEU PRO PRO PHE MET VAL ASP SEQRES 22 C 308 PHE ASN VAL HIS PRO LYS LYS LYS GLU VAL ASN ILE LEU SEQRES 23 C 308 LYS GLU ARG LYS PHE LEU GLU LEU VAL ARG GLU LEU ALA SEQRES 24 C 308 GLY LYS GLU LYS PRO ILE VAL ASP ILE SEQRES 1 A 308 MET GLU VAL ARG LYS VAL ILE ALA ALA GLY GLU VAL ILE SEQRES 2 A 308 GLU SER PRO VAL ASP VAL VAL LYS GLU LEU VAL GLU ASN SEQRES 3 A 308 SER LEU ASP ALA LYS ALA THR LYS VAL GLU VAL GLU ILE SEQRES 4 A 308 VAL LYS GLY GLY LYS ARG LEU ILE ARG VAL LYS ASP ASN SEQRES 5 A 308 GLY THR GLY ILE HIS PRO GLU ASP VAL GLU LYS VAL VAL SEQRES 6 A 308 LEU GLN GLY ALA THR SER LYS ILE GLU THR GLU LYS ASP SEQRES 7 A 308 LEU MET ASN ILE SER THR TYR GLY PHE ARG GLY GLU ALA SEQRES 8 A 308 LEU TYR SER ILE SER SER VAL SER LYS PHE LYS LEU ARG SEQRES 9 A 308 SER ARG PHE PHE GLN GLU LYS GLU GLY LYS GLU ILE GLU SEQRES 10 A 308 VAL GLU ALA GLY ASN ILE LEU GLY THR ARG ARG VAL GLY SEQRES 11 A 308 MET PRO VAL GLY THR GLU VAL GLU VAL ARG ASP LEU PHE SEQRES 12 A 308 PHE ASN LEU PRO VAL ARG ARG LYS PHE LEU LYS LYS GLU SEQRES 13 A 308 ASP THR GLU ARG ARG LYS VAL LEU GLU LEU ILE LYS GLU SEQRES 14 A 308 TYR ALA LEU THR ASN PRO GLU VAL GLU PHE THR LEU PHE SEQRES 15 A 308 SER GLU GLY ARG GLU THR LEU LYS LEU LYS LYS SER SER SEQRES 16 A 308 LEU LYS GLU ARG VAL GLU GLU VAL PHE GLN THR LYS THR SEQRES 17 A 308 GLU GLU LEU TYR ALA GLU ARG GLU GLY ILE THR LEU ARG SEQRES 18 A 308 ALA PHE VAL SER ARG ASN GLN ARG GLN GLY LYS TYR TYR SEQRES 19 A 308 VAL PHE ILE ASN LYS ARG PRO ILE GLN ASN LYS ASN LEU SEQRES 20 A 308 LYS GLU PHE LEU ARG LYS VAL PHE GLY TYR LYS THR LEU SEQRES 21 A 308 VAL VAL LEU TYR ALA GLU LEU PRO PRO PHE MET VAL ASP SEQRES 22 A 308 PHE ASN VAL HIS PRO LYS LYS LYS GLU VAL ASN ILE LEU SEQRES 23 A 308 LYS GLU ARG LYS PHE LEU GLU LEU VAL ARG GLU LEU ALA SEQRES 24 A 308 GLY LYS GLU LYS PRO ILE VAL ASP ILE SEQRES 1 B 308 MET GLU VAL ARG LYS VAL ILE ALA ALA GLY GLU VAL ILE SEQRES 2 B 308 GLU SER PRO VAL ASP VAL VAL LYS GLU LEU VAL GLU ASN SEQRES 3 B 308 SER LEU ASP ALA LYS ALA THR LYS VAL GLU VAL GLU ILE SEQRES 4 B 308 VAL LYS GLY GLY LYS ARG LEU ILE ARG VAL LYS ASP ASN SEQRES 5 B 308 GLY THR GLY ILE HIS PRO GLU ASP VAL GLU LYS VAL VAL SEQRES 6 B 308 LEU GLN GLY ALA THR SER LYS ILE GLU THR GLU LYS ASP SEQRES 7 B 308 LEU MET ASN ILE SER THR TYR GLY PHE ARG GLY GLU ALA SEQRES 8 B 308 LEU TYR SER ILE SER SER VAL SER LYS PHE LYS LEU ARG SEQRES 9 B 308 SER ARG PHE PHE GLN GLU LYS GLU GLY LYS GLU ILE GLU SEQRES 10 B 308 VAL GLU ALA GLY ASN ILE LEU GLY THR ARG ARG VAL GLY SEQRES 11 B 308 MET PRO VAL GLY THR GLU VAL GLU VAL ARG ASP LEU PHE SEQRES 12 B 308 PHE ASN LEU PRO VAL ARG ARG LYS PHE LEU LYS LYS GLU SEQRES 13 B 308 ASP THR GLU ARG ARG LYS VAL LEU GLU LEU ILE LYS GLU SEQRES 14 B 308 TYR ALA LEU THR ASN PRO GLU VAL GLU PHE THR LEU PHE SEQRES 15 B 308 SER GLU GLY ARG GLU THR LEU LYS LEU LYS LYS SER SER SEQRES 16 B 308 LEU LYS GLU ARG VAL GLU GLU VAL PHE GLN THR LYS THR SEQRES 17 B 308 GLU GLU LEU TYR ALA GLU ARG GLU GLY ILE THR LEU ARG SEQRES 18 B 308 ALA PHE VAL SER ARG ASN GLN ARG GLN GLY LYS TYR TYR SEQRES 19 B 308 VAL PHE ILE ASN LYS ARG PRO ILE GLN ASN LYS ASN LEU SEQRES 20 B 308 LYS GLU PHE LEU ARG LYS VAL PHE GLY TYR LYS THR LEU SEQRES 21 B 308 VAL VAL LEU TYR ALA GLU LEU PRO PRO PHE MET VAL ASP SEQRES 22 B 308 PHE ASN VAL HIS PRO LYS LYS LYS GLU VAL ASN ILE LEU SEQRES 23 B 308 LYS GLU ARG LYS PHE LEU GLU LEU VAL ARG GLU LEU ALA SEQRES 24 B 308 GLY LYS GLU LYS PRO ILE VAL ASP ILE HET PEG C 401 7 HET PEG B 401 7 HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 4 PEG 2(C4 H10 O3) FORMUL 6 HOH *19(H2 O) HELIX 1 AA1 SER C 15 ALA C 30 1 16 HELIX 2 AA2 HIS C 57 GLU C 59 5 3 HELIX 3 AA3 ASP C 60 LEU C 66 1 7 HELIX 4 AA4 LYS C 155 ASN C 174 1 20 HELIX 5 AA5 ARG C 199 PHE C 204 1 6 HELIX 6 AA6 ASN C 244 PHE C 255 1 12 HELIX 7 AA7 LYS C 287 ALA C 299 1 13 HELIX 8 AA8 SER A 15 ALA A 30 1 16 HELIX 9 AA9 HIS A 57 GLU A 59 5 3 HELIX 10 AB1 ASP A 60 LEU A 66 1 7 HELIX 11 AB2 LYS A 155 ASN A 174 1 20 HELIX 12 AB3 ARG A 199 PHE A 204 1 6 HELIX 13 AB4 ASN A 244 PHE A 255 1 12 HELIX 14 AB5 LYS A 287 GLY A 300 1 14 HELIX 15 AB6 SER B 15 ALA B 30 1 16 HELIX 16 AB7 HIS B 57 LEU B 66 1 10 HELIX 17 AB8 LYS B 155 ASN B 174 1 20 HELIX 18 AB9 ARG B 199 PHE B 204 1 6 HELIX 19 AC1 ASN B 244 PHE B 255 1 12 HELIX 20 AC2 LYS B 287 LEU B 298 1 12 SHEET 1 AA1 8 ASN C 122 ARG C 128 0 SHEET 2 AA1 8 LYS C 114 GLU C 119 -1 N GLU C 119 O ASN C 122 SHEET 3 AA1 8 LYS C 102 ARG C 106 -1 N LEU C 103 O ILE C 116 SHEET 4 AA1 8 GLY C 134 GLU C 138 -1 O GLU C 138 N LYS C 102 SHEET 5 AA1 8 LEU C 46 ASP C 51 -1 N ASP C 51 O THR C 135 SHEET 6 AA1 8 LYS C 34 VAL C 40 -1 N GLU C 36 O LYS C 50 SHEET 7 AA1 8 GLU C 178 PHE C 182 1 O THR C 180 N VAL C 37 SHEET 8 AA1 8 LYS C 192 LYS C 193 -1 O LYS C 193 N PHE C 179 SHEET 1 AA2 5 GLU C 209 ARG C 215 0 SHEET 2 AA2 5 ILE C 218 SER C 225 -1 O VAL C 224 N GLU C 209 SHEET 3 AA2 5 LEU C 260 GLU C 266 -1 O TYR C 264 N ARG C 221 SHEET 4 AA2 5 LYS C 232 ILE C 237 1 N PHE C 236 O LEU C 263 SHEET 5 AA2 5 ARG C 240 ILE C 242 -1 O ILE C 242 N VAL C 235 SHEET 1 AA3 8 ASN A 122 ARG A 128 0 SHEET 2 AA3 8 LYS A 114 GLU A 119 -1 N GLU A 115 O ARG A 127 SHEET 3 AA3 8 LYS A 102 ARG A 106 -1 N LEU A 103 O ILE A 116 SHEET 4 AA3 8 GLY A 134 GLU A 138 -1 O GLU A 138 N LYS A 102 SHEET 5 AA3 8 LEU A 46 ASP A 51 -1 N ASP A 51 O THR A 135 SHEET 6 AA3 8 LYS A 34 VAL A 40 -1 N GLU A 36 O LYS A 50 SHEET 7 AA3 8 GLU A 178 PHE A 182 1 O THR A 180 N VAL A 37 SHEET 8 AA3 8 LYS A 192 LYS A 193 -1 O LYS A 193 N PHE A 179 SHEET 1 AA4 5 GLU A 210 ARG A 215 0 SHEET 2 AA4 5 ILE A 218 PHE A 223 -1 O ALA A 222 N LEU A 211 SHEET 3 AA4 5 VAL A 261 GLU A 266 -1 O TYR A 264 N ARG A 221 SHEET 4 AA4 5 TYR A 233 ILE A 237 1 N PHE A 236 O LEU A 263 SHEET 5 AA4 5 ARG A 240 PRO A 241 -1 O ARG A 240 N ILE A 237 SHEET 1 AA5 8 ASN B 122 ARG B 128 0 SHEET 2 AA5 8 LYS B 114 GLU B 119 -1 N GLU B 115 O ARG B 127 SHEET 3 AA5 8 LYS B 102 ARG B 106 -1 N SER B 105 O LYS B 114 SHEET 4 AA5 8 GLY B 134 GLU B 138 -1 O GLU B 138 N LYS B 102 SHEET 5 AA5 8 LEU B 46 ASP B 51 -1 N ASP B 51 O THR B 135 SHEET 6 AA5 8 LYS B 34 VAL B 40 -1 N GLU B 36 O LYS B 50 SHEET 7 AA5 8 GLU B 178 PHE B 182 1 O THR B 180 N VAL B 37 SHEET 8 AA5 8 LYS B 192 LYS B 193 -1 O LYS B 193 N PHE B 179 SHEET 1 AA6 5 GLU B 209 ARG B 215 0 SHEET 2 AA6 5 ILE B 218 VAL B 224 -1 O ALA B 222 N LEU B 211 SHEET 3 AA6 5 VAL B 262 GLU B 266 -1 O TYR B 264 N ARG B 221 SHEET 4 AA6 5 TYR B 234 ILE B 237 1 N PHE B 236 O ALA B 265 SHEET 5 AA6 5 ARG B 240 ILE B 242 -1 O ILE B 242 N VAL B 235 CISPEP 1 ARG A 229 GLN A 230 0 -0.07 SITE 1 AC1 1 GLN C 243 CRYST1 126.929 145.253 176.769 90.00 90.00 90.00 I 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007878 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006885 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005657 0.00000