HEADER TRANSFERASE 14-MAR-17 5XAL TITLE Y99F MUTANT OF THERMUS THERMOPHILUS HB8 THYMIDYLATE KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DTMP KINASE; COMPND 5 EC: 2.7.4.9; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS (STRAIN HB8 / ATCC 27634 / SOURCE 3 DSM 579); SOURCE 4 ORGANISM_TAXID: 300852; SOURCE 5 STRAIN: HB8 / ATCC 27634 / DSM 579; SOURCE 6 GENE: TMK, TTHA1607; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS NUCLEOTIDE MONOPHOSPHATE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.K.CHAUDHARY,J.JEYAKANTHAN,K.SEKAR REVDAT 4 27-MAR-24 5XAL 1 LINK REVDAT 3 21-NOV-18 5XAL 1 JRNL REVDAT 2 18-APR-18 5XAL 1 JRNL REVDAT 1 14-MAR-18 5XAL 0 JRNL AUTH S.K.CHAUDHARY,J.JEYAKANTHAN,K.SEKAR JRNL TITL STRUCTURAL AND FUNCTIONAL ROLES OF DYNAMICALLY CORRELATED JRNL TITL 2 RESIDUES IN THYMIDYLATE KINASE. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 74 341 2018 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 29652261 JRNL DOI 10.1107/S2059798318002267 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 28705 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1486 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.84 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2064 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 132 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2847 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 171 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.45000 REMARK 3 B22 (A**2) : -0.94000 REMARK 3 B33 (A**2) : 0.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.177 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.163 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.129 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.402 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2920 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2914 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3950 ; 1.689 ; 2.015 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6689 ; 0.994 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 366 ; 5.354 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;33.563 ;21.111 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 495 ;14.632 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;16.830 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 449 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3213 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 636 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1463 ; 1.423 ; 1.894 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1464 ; 1.423 ; 1.895 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1822 ; 2.319 ; 2.822 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1823 ; 2.319 ; 2.825 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1457 ; 1.707 ; 2.120 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1454 ; 1.675 ; 2.120 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2127 ; 2.708 ; 3.097 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3146 ; 4.305 ;22.214 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3143 ; 4.308 ;22.196 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5XAL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1300003193. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.7293 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30239 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 47.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MAGNESIUM FORMATE DEHYDRATE, 20% REMARK 280 PEG 3350, MICROBATCH, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.43950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.75450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.78000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.75450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.43950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.78000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 140 REMARK 465 VAL A 141 REMARK 465 ARG A 142 REMARK 465 ARG A 143 REMARK 465 PRO A 144 REMARK 465 ASP A 145 REMARK 465 ARG A 146 REMARK 465 LEU A 147 REMARK 465 GLU A 148 REMARK 465 GLY A 149 REMARK 465 LEU A 150 REMARK 465 PRO A 198 REMARK 465 MET B 1 REMARK 465 ALA B 136 REMARK 465 ALA B 137 REMARK 465 LEU B 138 REMARK 465 ARG B 139 REMARK 465 ARG B 140 REMARK 465 VAL B 141 REMARK 465 ARG B 142 REMARK 465 ARG B 143 REMARK 465 PRO B 144 REMARK 465 ASP B 145 REMARK 465 ARG B 146 REMARK 465 LEU B 147 REMARK 465 GLU B 148 REMARK 465 GLY B 149 REMARK 465 LEU B 150 REMARK 465 PRO B 198 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 ARG A 120 CZ NH1 NH2 REMARK 470 GLU B 117 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 167 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 167 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 22 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 48 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 69 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 156 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 91 143.32 76.82 REMARK 500 TYR A 92 -153.40 -157.48 REMARK 500 ARG B 91 133.08 86.26 REMARK 500 TYR B 92 -145.90 -142.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 7 OG1 REMARK 620 2 GLU A 9 OE2 113.4 REMARK 620 3 ASP A 94 OD2 120.7 107.8 REMARK 620 4 HOH A 377 O 127.4 112.4 65.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 62 OH REMARK 620 2 SER A 66 OG 80.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 315 O REMARK 620 2 HOH A 325 O 111.4 REMARK 620 3 PRO B 109 O 103.6 89.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 7 OG1 REMARK 620 2 GLU B 9 OE2 119.9 REMARK 620 3 ASP B 94 OD2 125.3 103.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 205 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 39 OE1 REMARK 620 2 TYR B 92 O 90.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 62 OH REMARK 620 2 SER B 66 OG 76.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 204 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 131 OD1 REMARK 620 2 ARG B 159 O 106.9 REMARK 620 3 HOH B 319 O 88.9 142.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 206 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 165 O REMARK 620 2 GLU B 169 OE2 117.5 REMARK 620 3 HOH B 328 O 117.6 117.7 REMARK 620 4 HOH B 343 O 127.8 69.9 96.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 207 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5XAK RELATED DB: PDB DBREF 5XAL A 1 198 UNP Q5SHX3 KTHY_THET8 1 198 DBREF 5XAL B 1 198 UNP Q5SHX3 KTHY_THET8 1 198 SEQADV 5XAL PHE A 99 UNP Q5SHX3 TYR 99 ENGINEERED MUTATION SEQADV 5XAL PHE B 99 UNP Q5SHX3 TYR 99 ENGINEERED MUTATION SEQRES 1 A 198 MET PRO GLY LEU PHE LEU THR LEU GLU GLY LEU ASP GLY SEQRES 2 A 198 SER GLY LYS THR THR GLN ALA ARG ARG LEU ALA ALA PHE SEQRES 3 A 198 LEU GLU ALA GLN GLY ARG PRO VAL LEU LEU THR ARG GLU SEQRES 4 A 198 PRO GLY GLY GLY LEU PRO GLU VAL ARG SER LEU LEU LEU SEQRES 5 A 198 THR GLN GLU LEU SER PRO GLU ALA GLU TYR LEU LEU PHE SEQRES 6 A 198 SER ALA ASP ARG ALA GLU HIS VAL ARG LYS VAL ILE LEU SEQRES 7 A 198 PRO GLY LEU ALA ALA GLY LYS VAL VAL ILE SER ASP ARG SEQRES 8 A 198 TYR LEU ASP SER SER LEU ALA PHE GLN GLY TYR GLY ARG SEQRES 9 A 198 GLY LEU PRO LEU PRO TRP LEU ARG GLU VAL ALA ARG GLU SEQRES 10 A 198 ALA THR ARG GLY LEU LYS PRO ARG LEU THR PHE LEU LEU SEQRES 11 A 198 ASP LEU PRO PRO GLU ALA ALA LEU ARG ARG VAL ARG ARG SEQRES 12 A 198 PRO ASP ARG LEU GLU GLY LEU GLY LEU GLU PHE PHE ARG SEQRES 13 A 198 ARG VAL ARG GLU GLY TYR LEU ALA LEU ALA ARG ALA GLU SEQRES 14 A 198 PRO GLY ARG PHE VAL VAL LEU ASP ALA THR LEU PRO GLU SEQRES 15 A 198 GLU GLU ILE ALA ARG ALA ILE GLN ALA HIS LEU ARG PRO SEQRES 16 A 198 LEU LEU PRO SEQRES 1 B 198 MET PRO GLY LEU PHE LEU THR LEU GLU GLY LEU ASP GLY SEQRES 2 B 198 SER GLY LYS THR THR GLN ALA ARG ARG LEU ALA ALA PHE SEQRES 3 B 198 LEU GLU ALA GLN GLY ARG PRO VAL LEU LEU THR ARG GLU SEQRES 4 B 198 PRO GLY GLY GLY LEU PRO GLU VAL ARG SER LEU LEU LEU SEQRES 5 B 198 THR GLN GLU LEU SER PRO GLU ALA GLU TYR LEU LEU PHE SEQRES 6 B 198 SER ALA ASP ARG ALA GLU HIS VAL ARG LYS VAL ILE LEU SEQRES 7 B 198 PRO GLY LEU ALA ALA GLY LYS VAL VAL ILE SER ASP ARG SEQRES 8 B 198 TYR LEU ASP SER SER LEU ALA PHE GLN GLY TYR GLY ARG SEQRES 9 B 198 GLY LEU PRO LEU PRO TRP LEU ARG GLU VAL ALA ARG GLU SEQRES 10 B 198 ALA THR ARG GLY LEU LYS PRO ARG LEU THR PHE LEU LEU SEQRES 11 B 198 ASP LEU PRO PRO GLU ALA ALA LEU ARG ARG VAL ARG ARG SEQRES 12 B 198 PRO ASP ARG LEU GLU GLY LEU GLY LEU GLU PHE PHE ARG SEQRES 13 B 198 ARG VAL ARG GLU GLY TYR LEU ALA LEU ALA ARG ALA GLU SEQRES 14 B 198 PRO GLY ARG PHE VAL VAL LEU ASP ALA THR LEU PRO GLU SEQRES 15 B 198 GLU GLU ILE ALA ARG ALA ILE GLN ALA HIS LEU ARG PRO SEQRES 16 B 198 LEU LEU PRO HET MG A 201 1 HET MG A 202 1 HET FMT A 203 3 HET MG B 201 1 HET MG B 202 1 HET MG B 203 1 HET MG B 204 1 HET MG B 205 1 HET MG B 206 1 HET FMT B 207 3 HETNAM MG MAGNESIUM ION HETNAM FMT FORMIC ACID FORMUL 3 MG 8(MG 2+) FORMUL 5 FMT 2(C H2 O2) FORMUL 13 HOH *171(H2 O) HELIX 1 AA1 GLY A 15 GLN A 30 1 16 HELIX 2 AA2 LEU A 44 THR A 53 1 10 HELIX 3 AA3 SER A 57 VAL A 76 1 20 HELIX 4 AA4 VAL A 76 ALA A 83 1 8 HELIX 5 AA5 TYR A 92 GLN A 100 1 9 HELIX 6 AA6 PRO A 107 THR A 119 1 13 HELIX 7 AA7 PRO A 133 ALA A 137 5 5 HELIX 8 AA8 LEU A 152 GLU A 169 1 18 HELIX 9 AA9 PRO A 181 ARG A 194 1 14 HELIX 10 AB1 PRO A 195 LEU A 197 5 3 HELIX 11 AB2 GLY B 15 ALA B 29 1 15 HELIX 12 AB3 GLU B 46 LEU B 52 1 7 HELIX 13 AB4 SER B 57 VAL B 76 1 20 HELIX 14 AB5 VAL B 76 ALA B 83 1 8 HELIX 15 AB6 TYR B 92 GLN B 100 1 9 HELIX 16 AB7 PRO B 107 GLU B 117 1 11 HELIX 17 AB8 LEU B 152 GLU B 169 1 18 HELIX 18 AB9 PRO B 181 ARG B 194 1 14 HELIX 19 AC1 PRO B 195 LEU B 197 5 3 SHEET 1 AA1 5 VAL A 34 ARG A 38 0 SHEET 2 AA1 5 VAL A 86 ASP A 90 1 O ILE A 88 N THR A 37 SHEET 3 AA1 5 LEU A 4 GLU A 9 1 N LEU A 6 O VAL A 87 SHEET 4 AA1 5 LEU A 126 ASP A 131 1 O PHE A 128 N THR A 7 SHEET 5 AA1 5 PHE A 173 ASP A 177 1 O VAL A 174 N LEU A 129 SHEET 1 AA2 5 VAL B 34 ARG B 38 0 SHEET 2 AA2 5 VAL B 86 ASP B 90 1 O VAL B 86 N LEU B 35 SHEET 3 AA2 5 LEU B 4 GLY B 10 1 N LEU B 6 O VAL B 87 SHEET 4 AA2 5 LEU B 126 ASP B 131 1 O PHE B 128 N THR B 7 SHEET 5 AA2 5 PHE B 173 ASP B 177 1 O LEU B 176 N ASP B 131 LINK OG1 THR A 7 MG MG A 202 1555 1555 2.70 LINK OE2 GLU A 9 MG MG A 202 1555 1555 2.70 LINK OH TYR A 62 MG MG A 201 1555 1555 2.77 LINK OG SER A 66 MG MG A 201 1555 1555 2.93 LINK OD2 ASP A 94 MG MG A 202 1555 1555 2.68 LINK MG MG A 202 O HOH A 377 1555 1555 2.82 LINK O HOH A 315 MG MG B 201 1565 1555 2.90 LINK O HOH A 325 MG MG B 201 3554 1555 2.63 LINK OG1 THR B 7 MG MG B 203 1555 1555 2.55 LINK OE2 GLU B 9 MG MG B 203 1555 1555 2.78 LINK OE1 GLU B 39 MG MG B 205 1555 1555 2.68 LINK OH TYR B 62 MG MG B 202 1555 1555 2.87 LINK OG ASER B 66 MG MG B 202 1555 1555 2.74 LINK O TYR B 92 MG MG B 205 1555 1555 2.73 LINK OD2 ASP B 94 MG MG B 203 1555 1555 2.62 LINK O PRO B 109 MG MG B 201 1555 1555 2.71 LINK OD1 ASP B 131 MG MG B 204 1555 1555 2.83 LINK O ARG B 159 MG MG B 204 1555 1555 2.93 LINK O LEU B 165 MG MG B 206 1555 1555 2.69 LINK OE2 GLU B 169 MG MG B 206 1555 1555 2.47 LINK MG MG B 204 O HOH B 319 1555 1555 2.90 LINK MG MG B 206 O HOH B 328 1555 1555 2.58 LINK MG MG B 206 O HOH B 343 1555 1555 2.83 CISPEP 1 GLU A 39 PRO A 40 0 -10.10 CISPEP 2 GLU B 39 PRO B 40 0 0.61 SITE 1 AC1 5 TYR A 62 SER A 66 ARG A 69 LEU A 93 SITE 2 AC1 5 ALA A 115 SITE 1 AC2 6 THR A 7 GLU A 9 TYR A 92 ASP A 94 SITE 2 AC2 6 THR A 127 HOH A 377 SITE 1 AC3 6 GLY A 13 SER A 14 GLY A 15 LYS A 16 SITE 2 AC3 6 ARG A 139 HOH A 366 SITE 1 AC4 3 HOH A 315 HOH A 325 PRO B 109 SITE 1 AC5 3 TYR B 62 SER B 66 ARG B 69 SITE 1 AC6 5 THR B 7 GLU B 9 TYR B 92 ASP B 94 SITE 2 AC6 5 THR B 127 SITE 1 AC7 4 ASP B 131 ARG B 159 TYR B 162 HOH B 319 SITE 1 AC8 5 GLU B 39 ARG B 69 ARG B 91 TYR B 92 SITE 2 AC8 5 SER B 95 SITE 1 AC9 5 LEU B 165 ALA B 168 GLU B 169 HOH B 328 SITE 2 AC9 5 HOH B 343 SITE 1 AD1 5 ASP B 12 GLY B 13 GLY B 15 LYS B 16 SITE 2 AD1 5 THR B 17 CRYST1 46.879 47.560 151.509 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021331 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021026 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006600 0.00000