HEADER MEMBRANE PROTEIN 14-MAR-17 5XAP TITLE CRYSTAL STRUCTURE OF SECDF IN I FORM (C2 SPACE GROUP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TRANSLOCASE SUBUNIT SECD; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 28-768; COMPND 5 SYNONYM: PROTEIN-EXPORT MEMBRANE PROTEIN SECF; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS STR. R1; SOURCE 3 ORGANISM_TAXID: 243230; SOURCE 4 STRAIN: R1; SOURCE 5 GENE: SECD, SECF, DR_1822; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS MEMBRANE PROTEIN, ALFA HELICAL, SEC TRANSLOCON EXPDTA X-RAY DIFFRACTION AUTHOR T.TSUKAZAKI,Y.TANAKA,A.FURUKWA REVDAT 7 22-NOV-23 5XAP 1 REMARK REVDAT 6 09-FEB-22 5XAP 1 REMARK REVDAT 5 11-NOV-20 5XAP 1 REMARK REVDAT 4 14-OCT-20 5XAP 1 SOURCE REVDAT 3 22-MAY-19 5XAP 1 TITLE REVDAT 2 04-OCT-17 5XAP 1 REMARK REVDAT 1 17-MAY-17 5XAP 0 JRNL AUTH A.FURUKAWA,K.YOSHIKAIE,T.MORI,H.MORI,Y.V.MORIMOTO,Y.SUGANO, JRNL AUTH 2 S.IWAKI,T.MINAMINO,Y.SUGITA,Y.TANAKA,T.TSUKAZAKI JRNL TITL TUNNEL FORMATION INFERRED FROM THE I-FORM STRUCTURES OF THE JRNL TITL 2 PROTON-DRIVEN PROTEIN SECRETION MOTOR SECDF JRNL REF CELL REP V. 19 895 2017 JRNL REFN ESSN 2211-1247 JRNL PMID 28467902 JRNL DOI 10.1016/J.CELREP.2017.04.030 REMARK 2 REMARK 2 RESOLUTION. 2.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 28635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2002 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.1438 - 6.2732 0.99 1998 156 0.1687 0.1946 REMARK 3 2 6.2732 - 4.9808 1.00 1952 144 0.2185 0.2480 REMARK 3 3 4.9808 - 4.3516 0.88 1707 129 0.1927 0.2643 REMARK 3 4 4.3516 - 3.9539 1.00 1966 148 0.1951 0.2575 REMARK 3 5 3.9539 - 3.6706 1.00 1900 143 0.1956 0.2414 REMARK 3 6 3.6706 - 3.4543 1.00 1968 144 0.2007 0.2662 REMARK 3 7 3.4543 - 3.2813 1.00 1926 160 0.2172 0.2699 REMARK 3 8 3.2813 - 3.1385 1.00 1926 129 0.2176 0.2892 REMARK 3 9 3.1385 - 3.0177 1.00 1924 144 0.2189 0.3049 REMARK 3 10 3.0177 - 2.9136 1.00 1936 150 0.2229 0.2856 REMARK 3 11 2.9136 - 2.8225 1.00 1916 149 0.2219 0.2980 REMARK 3 12 2.8225 - 2.7418 1.00 1931 137 0.2290 0.2819 REMARK 3 13 2.7418 - 2.6697 1.00 1892 144 0.2297 0.2804 REMARK 3 14 2.6697 - 2.6045 0.87 1691 125 0.2237 0.3209 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5771 REMARK 3 ANGLE : 1.046 7806 REMARK 3 CHIRALITY : 0.054 927 REMARK 3 PLANARITY : 0.006 983 REMARK 3 DIHEDRAL : 19.021 3445 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.2035 -23.4364 25.6404 REMARK 3 T TENSOR REMARK 3 T11: 0.3188 T22: 0.2626 REMARK 3 T33: 0.2850 T12: 0.0473 REMARK 3 T13: -0.0578 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 3.3399 L22: 2.2180 REMARK 3 L33: 2.5668 L12: 2.7692 REMARK 3 L13: -3.0783 L23: -1.9399 REMARK 3 S TENSOR REMARK 3 S11: 0.2408 S12: -0.0949 S13: 0.1873 REMARK 3 S21: 0.1621 S22: -0.2231 S23: 0.1873 REMARK 3 S31: -0.0448 S32: 0.3827 S33: -0.0335 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 288 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9275 -19.8108 17.4617 REMARK 3 T TENSOR REMARK 3 T11: 0.3492 T22: 0.4061 REMARK 3 T33: 0.2168 T12: 0.0550 REMARK 3 T13: 0.0133 T23: -0.0403 REMARK 3 L TENSOR REMARK 3 L11: 7.5813 L22: 1.2695 REMARK 3 L33: -0.1025 L12: -2.3434 REMARK 3 L13: 0.9682 L23: -0.3978 REMARK 3 S TENSOR REMARK 3 S11: 0.0879 S12: -0.0944 S13: 0.0606 REMARK 3 S21: -0.0791 S22: -0.0453 S23: 0.0768 REMARK 3 S31: -0.0172 S32: 0.0717 S33: -0.0401 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 289 THROUGH 518 ) REMARK 3 ORIGIN FOR THE GROUP (A): -54.0098 -8.4741 18.6490 REMARK 3 T TENSOR REMARK 3 T11: 0.2267 T22: 0.1883 REMARK 3 T33: 0.2262 T12: 0.0088 REMARK 3 T13: -0.0065 T23: -0.0432 REMARK 3 L TENSOR REMARK 3 L11: 1.8217 L22: 1.0176 REMARK 3 L33: 1.1447 L12: -0.0971 REMARK 3 L13: -0.3889 L23: -0.2115 REMARK 3 S TENSOR REMARK 3 S11: 0.0310 S12: -0.1350 S13: -0.0849 REMARK 3 S21: -0.0416 S22: 0.0083 S23: 0.0099 REMARK 3 S31: 0.0422 S32: 0.0080 S33: -0.0261 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 519 THROUGH 562 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3968 8.9019 18.9005 REMARK 3 T TENSOR REMARK 3 T11: 0.4268 T22: 0.4282 REMARK 3 T33: 0.8135 T12: -0.0614 REMARK 3 T13: 0.0614 T23: -0.0692 REMARK 3 L TENSOR REMARK 3 L11: 5.9332 L22: 3.0830 REMARK 3 L33: 8.4220 L12: 0.0473 REMARK 3 L13: 2.7215 L23: 2.6967 REMARK 3 S TENSOR REMARK 3 S11: 0.2967 S12: -0.6864 S13: 1.2991 REMARK 3 S21: -0.0896 S22: 0.1477 S23: -0.5737 REMARK 3 S31: -0.8969 S32: -0.1412 S33: -0.2496 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 563 THROUGH 760 ) REMARK 3 ORIGIN FOR THE GROUP (A): -50.6313 -1.0374 7.4151 REMARK 3 T TENSOR REMARK 3 T11: 0.2633 T22: 0.1619 REMARK 3 T33: 0.2892 T12: -0.0137 REMARK 3 T13: 0.0576 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 3.5114 L22: 1.0963 REMARK 3 L33: 1.1493 L12: -0.4634 REMARK 3 L13: -0.4616 L23: -0.0471 REMARK 3 S TENSOR REMARK 3 S11: -0.0119 S12: 0.2952 S13: 0.4040 REMARK 3 S21: -0.0648 S22: 0.0248 S23: -0.0004 REMARK 3 S31: -0.0322 S32: -0.0779 S33: 0.0207 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XAP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1300003195. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : ?? REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28645 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.22300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.83300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3AQP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 41% PEG 200, 100MM NA-CITRATE, 100MM REMARK 280 NH4NO3, PH 5.9, LIPIDIC CUBIC PHASE, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 104.13250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.90350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 104.13250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.90350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 27 REMARK 465 SER A 28 REMARK 465 ALA A 761 REMARK 465 ALA A 762 REMARK 465 LYS A 763 REMARK 465 PRO A 764 REMARK 465 VAL A 765 REMARK 465 THR A 766 REMARK 465 ASN A 767 REMARK 465 SER A 768 REMARK 465 HIS A 769 REMARK 465 HIS A 770 REMARK 465 HIS A 771 REMARK 465 HIS A 772 REMARK 465 HIS A 773 REMARK 465 HIS A 774 REMARK 465 HIS A 775 REMARK 465 HIS A 776 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 520 NH2 ARG A 523 2.08 REMARK 500 NE2 GLN A 145 OG1 THR A 281 2.13 REMARK 500 NH2 ARG A 149 OD2 ASP A 236 2.13 REMARK 500 OD1 ASP A 365 O HOH A 901 2.13 REMARK 500 NH1 ARG A 543 OE1 GLN A 552 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 208 CB PHE A 208 CG -0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 760 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 51 62.24 39.08 REMARK 500 ALA A 148 52.46 70.16 REMARK 500 ASN A 227 -9.54 89.32 REMARK 500 ASN A 227 -9.13 89.32 REMARK 500 ASP A 235 51.81 39.07 REMARK 500 PHE A 249 -85.07 -130.17 REMARK 500 HIS A 465 39.39 -99.28 REMARK 500 ARG A 523 -71.79 -50.59 REMARK 500 THR A 535 -166.09 -128.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLC A 801 REMARK 610 OLC A 802 REMARK 610 OLC A 803 REMARK 610 OLC A 804 REMARK 610 OLC A 805 REMARK 610 OLC A 807 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 808 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5XAM RELATED DB: PDB REMARK 900 RELATED ID: 5XAN RELATED DB: PDB DBREF 5XAP A 28 768 UNP Q9RTE3 Q9RTE3_DEIRA 28 768 SEQADV 5XAP MET A 27 UNP Q9RTE3 EXPRESSION TAG SEQADV 5XAP CYS A 143 UNP Q9RTE3 ILE 143 ENGINEERED MUTATION SEQADV 5XAP CYS A 268 UNP Q9RTE3 LEU 268 ENGINEERED MUTATION SEQADV 5XAP HIS A 769 UNP Q9RTE3 EXPRESSION TAG SEQADV 5XAP HIS A 770 UNP Q9RTE3 EXPRESSION TAG SEQADV 5XAP HIS A 771 UNP Q9RTE3 EXPRESSION TAG SEQADV 5XAP HIS A 772 UNP Q9RTE3 EXPRESSION TAG SEQADV 5XAP HIS A 773 UNP Q9RTE3 EXPRESSION TAG SEQADV 5XAP HIS A 774 UNP Q9RTE3 EXPRESSION TAG SEQADV 5XAP HIS A 775 UNP Q9RTE3 EXPRESSION TAG SEQADV 5XAP HIS A 776 UNP Q9RTE3 EXPRESSION TAG SEQRES 1 A 750 MET SER ARG PRO ASN PRO TRP THR ALA LEU LEU LEU LEU SEQRES 2 A 750 LEU THR LEU LEU GLY SER LEU LEU TYR ILE TRP ARG PRO SEQRES 3 A 750 TRP GLU HIS LYS ASN ASP PRO TRP SER LEU TRP ASN ASP SEQRES 4 A 750 GLN TYR GLN PHE MET THR LEU GLY LEU ASP LEU LYS GLY SEQRES 5 A 750 GLY LEU ARG ILE GLU LEU ALA PRO GLU SER GLY THR ALA SEQRES 6 A 750 THR ARG ASP GLU LEU ASP ARG VAL LYS THR VAL ILE GLU SEQRES 7 A 750 ASN ARG ILE ASN ALA LEU GLY VAL ALA GLU PRO THR VAL SEQRES 8 A 750 THR VAL SER GLY GLY LYS ARG VAL VAL VAL GLU ILE PRO SEQRES 9 A 750 GLY ALA THR PRO ALA VAL GLN ASP ARG ALA ARG SER CYS SEQRES 10 A 750 ILE GLN GLN THR ALA ARG LEU GLU PHE ARG ILE VAL ASN SEQRES 11 A 750 SER ASP ALA LYS PRO ASP PRO ALA VAL ARG GLU LYS ASN SEQRES 12 A 750 PRO ARG SER SER GLY TYR THR LEU ALA GLN LEU GLY PRO SEQRES 13 A 750 VAL VAL ALA THR GLY GLU THR ILE ALA ASP ALA THR SER SEQRES 14 A 750 GLY THR ASP GLN ARG SER GLY GLN TRP VAL VAL ASN PHE SEQRES 15 A 750 LYS THR THR ASP ALA GLY ALA LYS THR PHE GLY ASP PHE SEQRES 16 A 750 THR GLY LYS ASN VAL ASN ARG LEU MET ALA VAL VAL LEU SEQRES 17 A 750 ASP ASP GLN ILE GLN SER VAL ALA THR ILE ASN GLN ARG SEQRES 18 A 750 LEU PHE ARG ASP ILE GLN ILE SER GLY ASN PHE THR PRO SEQRES 19 A 750 GLU GLU ALA SER GLN LEU ALA CYS VAL LEU LYS SER GLY SEQRES 20 A 750 ALA LEU PRO ILE LYS ILE VAL THR ALA ALA GLU ARG SER SEQRES 21 A 750 ILE GLY PRO SER LEU GLY ALA ASP ALA ILE ARG SER GLY SEQRES 22 A 750 ALA ILE ALA ALA LEU VAL GLY ILE GLY LEU VAL PHE VAL SEQRES 23 A 750 MET LEU PHE ALA TYR TYR GLY LEU TRP PHE GLY LEU VAL SEQRES 24 A 750 GLY ALA LEU GLY LEU LEU PHE SER SER ILE ILE ILE LEU SEQRES 25 A 750 GLY ILE LEU GLY GLY PHE GLY ALA THR LEU THR LEU PRO SEQRES 26 A 750 GLY ILE ALA GLY LEU VAL LEU THR ILE GLY ALA ALA VAL SEQRES 27 A 750 ASP GLY ASN VAL ILE SER PHE GLU ARG ILE LYS GLU GLU SEQRES 28 A 750 LEU ALA ARG GLY LYS GLY ILE LYS ASN ALA ILE GLY ALA SEQRES 29 A 750 GLY TYR GLU HIS SER THR ALA ALA ILE LEU ASP VAL ASN SEQRES 30 A 750 ALA SER HIS LEU LEU SER ALA LEU ALA LEU TYR ASN TYR SEQRES 31 A 750 SER THR GLY ALA VAL LYS GLY PHE ALA VAL THR LEU ILE SEQRES 32 A 750 ILE GLY VAL ILE ALA SER THR PHE SER ASN LEU VAL PHE SEQRES 33 A 750 ALA LYS TRP PHE MET GLN TRP LEU ALA GLN ARG ARG PRO SEQRES 34 A 750 ASN MET SER ALA PRO GLN TRP ILE LYS HIS THR HIS PHE SEQRES 35 A 750 ASP PHE MET LYS PRO ALA LYS VAL ILE THR THR LEU SER SEQRES 36 A 750 VAL LEU LEU ALA LEU ALA GLY ALA ALA LEU VAL ALA THR SEQRES 37 A 750 ARG GLY LEU ASN TYR GLY VAL ASP PHE ALA PRO GLY THR SEQRES 38 A 750 THR LEU THR ALA ARG VAL ASP ARG GLN VAL THR THR GLU SEQRES 39 A 750 GLN LEU ARG ASN SER VAL ILE GLY ALA GLY VAL SER LYS SEQRES 40 A 750 VAL THR GLY GLN SER ALA THR ILE GLN ARG ASP THR THR SEQRES 41 A 750 PRO GLY GLN GLN GLY GLN ASN PHE THR VAL LYS VAL PRO SEQRES 42 A 750 GLU LEU ASN ASP ALA GLU VAL LYS GLN ILE GLY ALA ALA SEQRES 43 A 750 ILE GLY LYS LEU PRO GLN GLY GLN VAL LEU ALA SER GLU SEQRES 44 A 750 THR VAL GLY PRO ALA VAL GLY LYS GLU LEU THR GLN LYS SEQRES 45 A 750 THR ILE TYR ALA VAL LEU LEU GLY LEU GLY LEU ILE LEU SEQRES 46 A 750 VAL TYR VAL GLY PHE ARG PHE ASP PHE ILE MET GLY LEU SEQRES 47 A 750 GLY SER ILE ILE ALA ALA ILE HIS ASP VAL ALA ILE ALA SEQRES 48 A 750 MET GLY LEU PHE SER LEU LEU GLY LEU GLU PHE THR VAL SEQRES 49 A 750 ALA SER VAL ALA ALA LEU LEU THR LEU ILE GLY TYR SER SEQRES 50 A 750 LEU ASN ASP SER ILE ILE VAL SER ASP ARG ILE ARG GLU SEQRES 51 A 750 ASN MET LYS THR MET ARG GLY HIS SER TYR ARG GLU ILE SEQRES 52 A 750 VAL ASN ALA ALA ILE ASN GLN THR LEU SER ARG THR VAL SEQRES 53 A 750 MET THR SER VAL SER THR MET LEU PRO LEU ILE SER LEU SEQRES 54 A 750 LEU ILE PHE GLY GLY PRO VAL LEU ARG ASP PHE SER LEU SEQRES 55 A 750 ILE LEU LEU VAL GLY ILE LEU VAL GLY THR TYR SER SER SEQRES 56 A 750 ILE TYR ILE VAL ALA PRO LEU VAL VAL TYR PHE GLU GLU SEQRES 57 A 750 TRP ARG ASP LYS ASN ARG ALA ALA LYS PRO VAL THR ASN SEQRES 58 A 750 SER HIS HIS HIS HIS HIS HIS HIS HIS HET OLC A 801 20 HET OLC A 802 20 HET OLC A 803 20 HET OLC A 804 8 HET OLC A 805 17 HET OLC A 806 25 HET OLC A 807 15 HET PEG A 808 7 HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 2 OLC 7(C21 H40 O4) FORMUL 9 PEG C4 H10 O3 FORMUL 10 HOH *52(H2 O) HELIX 1 AA1 ASN A 31 ARG A 51 1 21 HELIX 2 AA2 PRO A 52 LYS A 56 5 5 HELIX 3 AA3 GLY A 73 GLY A 78 1 6 HELIX 4 AA4 THR A 92 LEU A 110 1 19 HELIX 5 AA5 THR A 133 GLN A 146 1 14 HELIX 6 AA6 ASP A 162 ASN A 169 1 8 HELIX 7 AA7 THR A 176 LEU A 180 5 5 HELIX 8 AA8 THR A 211 GLY A 223 1 13 HELIX 9 AA9 THR A 259 GLY A 273 1 15 HELIX 10 AB1 GLY A 288 PHE A 344 1 57 HELIX 11 AB2 THR A 349 ALA A 363 1 15 HELIX 12 AB3 VAL A 364 ARG A 380 1 17 HELIX 13 AB4 GLY A 383 TYR A 416 1 34 HELIX 14 AB5 THR A 418 ARG A 454 1 37 HELIX 15 AB6 PRO A 473 ARG A 495 1 23 HELIX 16 AB7 THR A 518 GLY A 528 1 11 HELIX 17 AB8 ASN A 562 LEU A 576 1 15 HELIX 18 AB9 GLY A 588 PHE A 618 1 31 HELIX 19 AC1 ASP A 619 GLY A 645 1 27 HELIX 20 AC2 THR A 649 MET A 681 1 33 HELIX 21 AC3 SER A 685 THR A 697 1 13 HELIX 22 AC4 THR A 697 GLY A 719 1 23 HELIX 23 AC5 GLY A 720 ILE A 744 1 25 HELIX 24 AC6 ILE A 744 ARG A 760 1 17 SHEET 1 AA1 2 TRP A 63 ASN A 64 0 SHEET 2 AA1 2 TYR A 67 GLN A 68 -1 O TYR A 67 N ASN A 64 SHEET 1 AA2 2 THR A 71 LEU A 72 0 SHEET 2 AA2 2 THR A 347 LEU A 348 1 O LEU A 348 N THR A 71 SHEET 1 AA3 8 THR A 116 SER A 120 0 SHEET 2 AA3 8 ARG A 124 PRO A 130 -1 O VAL A 126 N THR A 118 SHEET 3 AA3 8 GLY A 79 PRO A 86 -1 N LEU A 84 O VAL A 125 SHEET 4 AA3 8 ILE A 279 ILE A 287 -1 O ARG A 285 N ARG A 81 SHEET 5 AA3 8 GLN A 580 VAL A 587 -1 O SER A 584 N SER A 286 SHEET 6 AA3 8 GLY A 506 VAL A 513 -1 N ARG A 512 O GLN A 580 SHEET 7 AA3 8 GLN A 552 VAL A 558 -1 O GLN A 552 N VAL A 513 SHEET 8 AA3 8 THR A 540 ARG A 543 -1 N GLN A 542 O THR A 555 SHEET 1 AA4 4 ALA A 185 THR A 186 0 SHEET 2 AA4 4 LEU A 150 ILE A 154 -1 N PHE A 152 O ALA A 185 SHEET 3 AA4 4 LEU A 229 LEU A 234 -1 O VAL A 233 N GLU A 151 SHEET 4 AA4 4 GLN A 237 THR A 243 -1 O ALA A 242 N MET A 230 SHEET 1 AA5 3 ILE A 190 THR A 197 0 SHEET 2 AA5 3 TRP A 204 THR A 210 -1 O VAL A 205 N GLY A 196 SHEET 3 AA5 3 ASP A 251 PHE A 258 -1 O ILE A 252 N PHE A 208 SHEET 1 AA6 2 ASN A 498 TYR A 499 0 SHEET 2 AA6 2 GLU A 647 PHE A 648 1 O PHE A 648 N ASN A 498 SSBOND 1 CYS A 143 CYS A 268 1555 1555 2.05 SITE 1 AC1 7 PRO A 32 ALA A 35 VAL A 305 ILE A 335 SITE 2 AC1 7 PHE A 442 TRP A 445 PHE A 718 SITE 1 AC2 6 LEU A 47 TRP A 53 PHE A 315 ALA A 316 SITE 2 AC2 6 GLY A 319 PRO A 460 SITE 1 AC3 4 PHE A 468 ASP A 469 PRO A 473 TYR A 743 SITE 1 AC4 4 ASN A 415 LYS A 475 THR A 479 TYR A 751 SITE 1 AC5 7 TYR A 416 LYS A 472 VAL A 476 TYR A 601 SITE 2 AC5 7 LEU A 604 LEU A 605 GLY A 608 SITE 1 AC6 9 LEU A 40 THR A 41 SER A 45 TYR A 48 SITE 2 AC6 9 GLY A 339 GLY A 343 PHE A 344 GLY A 345 SITE 3 AC6 9 ASN A 759 SITE 1 AC7 8 TRP A 63 ILE A 296 ALA A 303 SER A 334 SITE 2 AC7 8 ILE A 337 ILE A 353 LEU A 356 ILE A 360 SITE 1 AC8 1 TYR A 317 CRYST1 208.265 69.807 66.169 90.00 94.86 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004802 0.000000 0.000408 0.00000 SCALE2 0.000000 0.014325 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015167 0.00000