HEADER TRANSPORT PROTEIN 14-MAR-17 5XAS TITLE STRUCTURAL INSIGHTS INTO THE ELEVATOR-LIKE MECHANISM OF THE TITLE 2 SODIUM/CITRATE SYMPORTER CITS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CITRATE-SODIUM SYMPORTER; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 13-446; COMPND 5 SYNONYM: CITRATE CARRIER PROTEIN,CITRATE TRANSPORTER; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: CITS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CITS, CITRATE TRANSPORTER, SODIUM/CITRATE SYMPORTER, 2-HCT, TRANSPORT KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.S.JIN,J.W.KIM,S.KIM,S.KIM,H.LEE,J.-O.LEE REVDAT 3 22-NOV-23 5XAS 1 HETSYN REVDAT 2 29-JUL-20 5XAS 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 14-JUN-17 5XAS 0 JRNL AUTH J.W.KIM,S.KIM,S.KIM,H.LEE,J.O.LEE,M.S.JIN JRNL TITL STRUCTURAL INSIGHTS INTO THE ELEVATOR-LIKE MECHANISM OF THE JRNL TITL 2 SODIUM/CITRATE SYMPORTER CITS JRNL REF SCI REP V. 7 2548 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28566738 JRNL DOI 10.1038/S41598-017-02794-X REMARK 2 REMARK 2 RESOLUTION. 3.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 82.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 15446 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 849 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 863 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.4150 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.4040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6104 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 148.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.99000 REMARK 3 B22 (A**2) : -10.13000 REMARK 3 B33 (A**2) : 10.72000 REMARK 3 B12 (A**2) : 4.12000 REMARK 3 B13 (A**2) : 0.75000 REMARK 3 B23 (A**2) : 1.26000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.668 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.703 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 117.268 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.910 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.846 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6272 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6386 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8514 ; 1.756 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14598 ; 1.468 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 812 ; 4.363 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 191 ;35.696 ;22.775 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1033 ;13.787 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;14.110 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1042 ; 0.174 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6919 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1387 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3260 ; 4.876 ;11.094 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3259 ; 4.875 ;11.092 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4068 ; 8.023 ;16.632 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4069 ; 8.022 ;16.633 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3012 ; 4.314 ;11.506 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3010 ; 4.303 ;11.502 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4446 ; 7.363 ;17.104 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 29096 ;14.935 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 29097 ;14.935 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 22 446 B 22 446 45086 0.16 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 446 REMARK 3 ORIGIN FOR THE GROUP (A): -37.9281 -51.8611 30.5575 REMARK 3 T TENSOR REMARK 3 T11: 0.1098 T22: 0.2325 REMARK 3 T33: 0.0942 T12: -0.0737 REMARK 3 T13: 0.0649 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 2.5044 L22: 4.8015 REMARK 3 L33: 1.9408 L12: -0.1161 REMARK 3 L13: 0.4976 L23: -1.5614 REMARK 3 S TENSOR REMARK 3 S11: 0.0261 S12: 0.5823 S13: 0.3050 REMARK 3 S21: -0.4229 S22: 0.0035 S23: -0.0419 REMARK 3 S31: -0.0754 S32: 0.2317 S33: -0.0297 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 16 B 446 REMARK 3 ORIGIN FOR THE GROUP (A): -39.4026 -82.0529 56.5269 REMARK 3 T TENSOR REMARK 3 T11: 0.3067 T22: 0.3441 REMARK 3 T33: 0.2250 T12: -0.1114 REMARK 3 T13: -0.0104 T23: 0.0785 REMARK 3 L TENSOR REMARK 3 L11: 1.3728 L22: 4.2422 REMARK 3 L33: 2.2653 L12: -0.0918 REMARK 3 L13: -0.6717 L23: -0.8649 REMARK 3 S TENSOR REMARK 3 S11: 0.0123 S12: -0.5090 S13: -0.4200 REMARK 3 S21: 0.6528 S22: -0.0180 S23: 0.0640 REMARK 3 S31: 0.2440 S32: 0.0571 S33: 0.0057 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5XAS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1300003203. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16295 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.470 REMARK 200 RESOLUTION RANGE LOW (A) : 82.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5A1S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES PH 6.0-6.5, 100-200 MM REMARK 280 NACL, 32-36% PEG400, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 LYS A 13 REMARK 465 GLY A 14 REMARK 465 VAL A 15 REMARK 465 SER A 16 REMARK 465 ASP A 17 REMARK 465 LEU A 18 REMARK 465 LEU A 19 REMARK 465 GLY A 20 REMARK 465 PHE A 21 REMARK 465 ARG A 248 REMARK 465 LYS A 249 REMARK 465 ALA A 250 REMARK 465 SER A 251 REMARK 465 PHE A 252 REMARK 465 LYS A 253 REMARK 465 VAL A 254 REMARK 465 GLU A 255 REMARK 465 GLU A 256 REMARK 465 ASP A 257 REMARK 465 GLU A 258 REMARK 465 LYS A 259 REMARK 465 THR A 260 REMARK 465 GLY A 261 REMARK 465 GLN A 262 REMARK 465 ILE A 263 REMARK 465 PRO A 447 REMARK 465 ARG A 448 REMARK 465 GLY B 11 REMARK 465 SER B 12 REMARK 465 LYS B 13 REMARK 465 GLY B 14 REMARK 465 VAL B 15 REMARK 465 TRP B 239 REMARK 465 LEU B 240 REMARK 465 SER B 241 REMARK 465 GLY B 242 REMARK 465 GLU B 243 REMARK 465 GLY B 244 REMARK 465 GLU B 245 REMARK 465 LEU B 246 REMARK 465 VAL B 247 REMARK 465 ARG B 248 REMARK 465 LYS B 249 REMARK 465 ALA B 250 REMARK 465 SER B 251 REMARK 465 PHE B 252 REMARK 465 LYS B 253 REMARK 465 VAL B 254 REMARK 465 GLU B 255 REMARK 465 GLU B 256 REMARK 465 ASP B 257 REMARK 465 GLU B 258 REMARK 465 LYS B 259 REMARK 465 THR B 260 REMARK 465 GLY B 261 REMARK 465 GLN B 262 REMARK 465 PRO B 447 REMARK 465 ARG B 448 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 144 OG SER B 426 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 171 CB - CG - OD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 49 44.88 -83.94 REMARK 500 TYR A 78 -134.59 55.95 REMARK 500 LEU A 137 -72.03 -50.93 REMARK 500 TYR A 177 -75.86 -117.58 REMARK 500 ILE A 289 -64.07 -97.06 REMARK 500 THR A 349 80.70 -150.37 REMARK 500 ASN A 415 16.31 57.90 REMARK 500 ARG A 416 44.47 -109.22 REMARK 500 ARG A 428 -60.47 -102.21 REMARK 500 PHE B 21 126.87 -30.53 REMARK 500 THR B 49 42.64 -83.31 REMARK 500 ASP B 50 -166.67 -125.88 REMARK 500 ASP B 112 -63.01 -107.87 REMARK 500 TYR B 177 -73.27 -117.94 REMARK 500 ASN B 186 -72.63 -84.83 REMARK 500 HIS B 237 78.30 -115.97 REMARK 500 ILE B 358 39.38 -93.47 REMARK 500 ASN B 415 68.55 -68.33 REMARK 500 ARG B 428 -61.27 -101.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 181 O REMARK 620 2 GLY A 183 O 109.3 REMARK 620 3 MET A 399 O 70.9 93.2 REMARK 620 4 ASN A 401 O 118.2 131.7 94.1 REMARK 620 5 HOH A 601 O 118.9 57.6 53.2 90.5 REMARK 620 6 HOH A 602 O 92.3 85.5 161.8 100.3 136.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE B 181 O REMARK 620 2 GLY B 183 O 95.2 REMARK 620 3 MET B 399 O 75.8 100.6 REMARK 620 4 ASN B 401 O 123.4 133.1 113.0 REMARK 620 5 HOH B 601 O 139.2 82.9 64.7 83.1 REMARK 620 6 HOH B 602 O 69.1 93.1 143.3 79.3 151.6 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5X9R RELATED DB: PDB REMARK 900 RELATED ID: 5XAR RELATED DB: PDB REMARK 900 RELATED ID: 5XAT RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHOR REPLACED THE 7-PPATEK-12 AMINO ACID REGION OF KPCITS WITH A REMARK 999 THROMBIN RECOGNITION SEQUENCE (LVPRGS) DBREF 5XAS A 13 446 UNP P31602 CITN_KLEPN 13 446 DBREF 5XAS B 13 446 UNP P31602 CITN_KLEPN 13 446 SEQADV 5XAS GLY A 11 UNP P31602 EXPRESSION TAG SEQADV 5XAS SER A 12 UNP P31602 EXPRESSION TAG SEQADV 5XAS PRO A 447 UNP P31602 EXPRESSION TAG SEQADV 5XAS ARG A 448 UNP P31602 EXPRESSION TAG SEQADV 5XAS GLY B 11 UNP P31602 EXPRESSION TAG SEQADV 5XAS SER B 12 UNP P31602 EXPRESSION TAG SEQADV 5XAS PRO B 447 UNP P31602 EXPRESSION TAG SEQADV 5XAS ARG B 448 UNP P31602 EXPRESSION TAG SEQRES 1 A 438 GLY SER LYS GLY VAL SER ASP LEU LEU GLY PHE LYS ILE SEQRES 2 A 438 PHE GLY MET PRO LEU PRO LEU TYR ALA PHE ALA LEU ILE SEQRES 3 A 438 THR LEU LEU LEU SER HIS PHE TYR ASN ALA LEU PRO THR SEQRES 4 A 438 ASP ILE VAL GLY GLY PHE ALA ILE MET PHE ILE ILE GLY SEQRES 5 A 438 ALA ILE PHE GLY GLU ILE GLY LYS ARG LEU PRO ILE PHE SEQRES 6 A 438 ASN LYS TYR ILE GLY GLY ALA PRO VAL MET ILE PHE LEU SEQRES 7 A 438 VAL ALA ALA TYR PHE VAL TYR ALA GLY ILE PHE THR GLN SEQRES 8 A 438 LYS GLU ILE ASP ALA ILE SER ASN VAL MET ASP LYS SER SEQRES 9 A 438 ASN PHE LEU ASN LEU PHE ILE ALA VAL LEU ILE THR GLY SEQRES 10 A 438 ALA ILE LEU SER VAL ASN ARG ARG LEU LEU LEU LYS SER SEQRES 11 A 438 LEU LEU GLY TYR ILE PRO THR ILE LEU MET GLY ILE VAL SEQRES 12 A 438 GLY ALA SER ILE PHE GLY ILE ALA ILE GLY LEU VAL PHE SEQRES 13 A 438 GLY ILE PRO VAL ASP ARG ILE MET MET LEU TYR VAL LEU SEQRES 14 A 438 PRO ILE MET GLY GLY GLY ASN GLY ALA GLY ALA VAL PRO SEQRES 15 A 438 LEU SER GLU ILE TYR HIS SER VAL THR GLY ARG SER ARG SEQRES 16 A 438 GLU GLU TYR TYR SER THR ALA ILE ALA ILE LEU THR ILE SEQRES 17 A 438 ALA ASN ILE PHE ALA ILE VAL PHE ALA ALA VAL LEU ASP SEQRES 18 A 438 ILE ILE GLY LYS LYS HIS THR TRP LEU SER GLY GLU GLY SEQRES 19 A 438 GLU LEU VAL ARG LYS ALA SER PHE LYS VAL GLU GLU ASP SEQRES 20 A 438 GLU LYS THR GLY GLN ILE THR HIS ARG GLU THR ALA VAL SEQRES 21 A 438 GLY LEU VAL LEU SER THR THR CYS PHE LEU LEU ALA TYR SEQRES 22 A 438 VAL VAL ALA LYS LYS ILE LEU PRO SER ILE GLY GLY VAL SEQRES 23 A 438 ALA ILE HIS TYR PHE ALA TRP MET VAL LEU ILE VAL ALA SEQRES 24 A 438 ALA LEU ASN ALA SER GLY LEU CYS SER PRO GLU ILE LYS SEQRES 25 A 438 ALA GLY ALA LYS ARG LEU SER ASP PHE PHE SER LYS GLN SEQRES 26 A 438 LEU LEU TRP VAL LEU MET VAL GLY VAL GLY VAL CYS TYR SEQRES 27 A 438 THR ASP LEU GLN GLU ILE ILE ASN ALA ILE THR PHE ALA SEQRES 28 A 438 ASN VAL VAL ILE ALA ALA ILE ILE VAL ILE GLY ALA VAL SEQRES 29 A 438 LEU GLY ALA ALA ILE GLY GLY TRP LEU MET GLY PHE PHE SEQRES 30 A 438 PRO ILE GLU SER ALA ILE THR ALA GLY LEU CYS MET ALA SEQRES 31 A 438 ASN ARG GLY GLY SER GLY ASP LEU GLU VAL LEU SER ALA SEQRES 32 A 438 CYS ASN ARG MET ASN LEU ILE SER TYR ALA GLN ILE SER SEQRES 33 A 438 SER ARG LEU GLY GLY GLY ILE VAL LEU VAL ILE ALA SER SEQRES 34 A 438 ILE VAL PHE GLY MET MET ILE PRO ARG SEQRES 1 B 438 GLY SER LYS GLY VAL SER ASP LEU LEU GLY PHE LYS ILE SEQRES 2 B 438 PHE GLY MET PRO LEU PRO LEU TYR ALA PHE ALA LEU ILE SEQRES 3 B 438 THR LEU LEU LEU SER HIS PHE TYR ASN ALA LEU PRO THR SEQRES 4 B 438 ASP ILE VAL GLY GLY PHE ALA ILE MET PHE ILE ILE GLY SEQRES 5 B 438 ALA ILE PHE GLY GLU ILE GLY LYS ARG LEU PRO ILE PHE SEQRES 6 B 438 ASN LYS TYR ILE GLY GLY ALA PRO VAL MET ILE PHE LEU SEQRES 7 B 438 VAL ALA ALA TYR PHE VAL TYR ALA GLY ILE PHE THR GLN SEQRES 8 B 438 LYS GLU ILE ASP ALA ILE SER ASN VAL MET ASP LYS SER SEQRES 9 B 438 ASN PHE LEU ASN LEU PHE ILE ALA VAL LEU ILE THR GLY SEQRES 10 B 438 ALA ILE LEU SER VAL ASN ARG ARG LEU LEU LEU LYS SER SEQRES 11 B 438 LEU LEU GLY TYR ILE PRO THR ILE LEU MET GLY ILE VAL SEQRES 12 B 438 GLY ALA SER ILE PHE GLY ILE ALA ILE GLY LEU VAL PHE SEQRES 13 B 438 GLY ILE PRO VAL ASP ARG ILE MET MET LEU TYR VAL LEU SEQRES 14 B 438 PRO ILE MET GLY GLY GLY ASN GLY ALA GLY ALA VAL PRO SEQRES 15 B 438 LEU SER GLU ILE TYR HIS SER VAL THR GLY ARG SER ARG SEQRES 16 B 438 GLU GLU TYR TYR SER THR ALA ILE ALA ILE LEU THR ILE SEQRES 17 B 438 ALA ASN ILE PHE ALA ILE VAL PHE ALA ALA VAL LEU ASP SEQRES 18 B 438 ILE ILE GLY LYS LYS HIS THR TRP LEU SER GLY GLU GLY SEQRES 19 B 438 GLU LEU VAL ARG LYS ALA SER PHE LYS VAL GLU GLU ASP SEQRES 20 B 438 GLU LYS THR GLY GLN ILE THR HIS ARG GLU THR ALA VAL SEQRES 21 B 438 GLY LEU VAL LEU SER THR THR CYS PHE LEU LEU ALA TYR SEQRES 22 B 438 VAL VAL ALA LYS LYS ILE LEU PRO SER ILE GLY GLY VAL SEQRES 23 B 438 ALA ILE HIS TYR PHE ALA TRP MET VAL LEU ILE VAL ALA SEQRES 24 B 438 ALA LEU ASN ALA SER GLY LEU CYS SER PRO GLU ILE LYS SEQRES 25 B 438 ALA GLY ALA LYS ARG LEU SER ASP PHE PHE SER LYS GLN SEQRES 26 B 438 LEU LEU TRP VAL LEU MET VAL GLY VAL GLY VAL CYS TYR SEQRES 27 B 438 THR ASP LEU GLN GLU ILE ILE ASN ALA ILE THR PHE ALA SEQRES 28 B 438 ASN VAL VAL ILE ALA ALA ILE ILE VAL ILE GLY ALA VAL SEQRES 29 B 438 LEU GLY ALA ALA ILE GLY GLY TRP LEU MET GLY PHE PHE SEQRES 30 B 438 PRO ILE GLU SER ALA ILE THR ALA GLY LEU CYS MET ALA SEQRES 31 B 438 ASN ARG GLY GLY SER GLY ASP LEU GLU VAL LEU SER ALA SEQRES 32 B 438 CYS ASN ARG MET ASN LEU ILE SER TYR ALA GLN ILE SER SEQRES 33 B 438 SER ARG LEU GLY GLY GLY ILE VAL LEU VAL ILE ALA SER SEQRES 34 B 438 ILE VAL PHE GLY MET MET ILE PRO ARG HET NA A 501 1 HET FLC A 502 13 HET BOG A 503 20 HET NA B 501 1 HET FLC B 502 13 HETNAM NA SODIUM ION HETNAM FLC CITRATE ANION HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETSYN BOG BETA-OCTYLGLUCOSIDE; OCTYL BETA-D-GLUCOSIDE; OCTYL D- HETSYN 2 BOG GLUCOSIDE; OCTYL GLUCOSIDE FORMUL 3 NA 2(NA 1+) FORMUL 4 FLC 2(C6 H5 O7 3-) FORMUL 5 BOG C14 H28 O6 FORMUL 8 HOH *4(H2 O) HELIX 1 AA1 PRO A 27 TYR A 44 1 18 HELIX 2 AA2 ASP A 50 LEU A 72 1 23 HELIX 3 AA3 LYS A 77 GLY A 81 5 5 HELIX 4 AA4 ALA A 82 ALA A 96 1 15 HELIX 5 AA5 THR A 100 ASP A 112 1 13 HELIX 6 AA6 ASN A 115 VAL A 132 1 18 HELIX 7 AA7 LEU A 136 PHE A 166 1 31 HELIX 8 AA8 PRO A 169 TYR A 177 1 9 HELIX 9 AA9 TYR A 177 GLY A 183 1 7 HELIX 10 AB1 GLY A 184 GLY A 189 1 6 HELIX 11 AB2 GLY A 189 THR A 201 1 13 HELIX 12 AB3 SER A 204 HIS A 237 1 34 HELIX 13 AB4 HIS A 265 ILE A 289 1 25 HELIX 14 AB5 HIS A 299 GLY A 315 1 17 HELIX 15 AB6 SER A 318 GLN A 335 1 18 HELIX 16 AB7 LEU A 336 TYR A 348 1 13 HELIX 17 AB8 ASP A 350 ASN A 356 1 7 HELIX 18 AB9 THR A 359 GLY A 385 1 27 HELIX 19 AC1 PHE A 387 ALA A 395 1 9 HELIX 20 AC2 GLY A 396 ASN A 401 1 6 HELIX 21 AC3 ARG A 402 CYS A 414 1 13 HELIX 22 AC4 ARG A 416 ASN A 418 5 3 HELIX 23 AC5 LEU A 419 ILE A 446 1 28 HELIX 24 AC6 ASP B 17 PHE B 21 1 5 HELIX 25 AC7 PRO B 27 TYR B 44 1 18 HELIX 26 AC8 ASP B 50 LEU B 72 1 23 HELIX 27 AC9 LEU B 72 GLY B 80 1 9 HELIX 28 AD1 GLY B 80 ALA B 96 1 17 HELIX 29 AD2 THR B 100 ASP B 112 1 13 HELIX 30 AD3 ASN B 115 SER B 131 1 17 HELIX 31 AD4 ASN B 133 PHE B 166 1 34 HELIX 32 AD5 PRO B 169 TYR B 177 1 9 HELIX 33 AD6 TYR B 177 GLY B 183 1 7 HELIX 34 AD7 GLY B 189 THR B 201 1 13 HELIX 35 AD8 SER B 204 HIS B 237 1 34 HELIX 36 AD9 THR B 264 LYS B 288 1 25 HELIX 37 AE1 HIS B 299 GLY B 315 1 17 HELIX 38 AE2 SER B 318 GLN B 335 1 18 HELIX 39 AE3 LEU B 336 TYR B 348 1 13 HELIX 40 AE4 ASP B 350 ASN B 356 1 7 HELIX 41 AE5 ALA B 361 GLY B 385 1 25 HELIX 42 AE6 PHE B 387 ALA B 395 1 9 HELIX 43 AE7 GLY B 396 ASN B 401 1 6 HELIX 44 AE8 ARG B 402 CYS B 414 1 13 HELIX 45 AE9 ARG B 416 ASN B 418 5 3 HELIX 46 AF1 LEU B 419 ILE B 446 1 28 LINK O ILE A 181 NA NA A 501 1555 1555 2.42 LINK O GLY A 183 NA NA A 501 1555 1555 2.01 LINK O MET A 399 NA NA A 501 1555 1555 2.81 LINK O ASN A 401 NA NA A 501 1555 1555 2.40 LINK NA NA A 501 O HOH A 601 1555 1555 2.97 LINK NA NA A 501 O HOH A 602 1555 1555 2.90 LINK O ILE B 181 NA NA B 501 1555 1555 2.59 LINK O GLY B 183 NA NA B 501 1555 1555 2.22 LINK O MET B 399 NA NA B 501 1555 1555 2.40 LINK O ASN B 401 NA NA B 501 1555 1555 2.15 LINK NA NA B 501 O HOH B 601 1555 1555 2.19 LINK NA NA B 501 O HOH B 602 1555 1555 2.20 CRYST1 51.705 83.340 81.060 97.14 100.16 94.59 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019340 0.001553 0.003722 0.00000 SCALE2 0.000000 0.012038 0.001716 0.00000 SCALE3 0.000000 0.000000 0.012660 0.00000