HEADER CELL ADHESION 15-MAR-17 5XAX TITLE PARALLEL HOMODIMER STRUCTURES OF THE EXTRACELLULAR DOMAINS OF THE TITLE 2 VOLTAGE-GATED SODIUM CHANNEL BETA4 SUBUNIT EXPLAIN ITS ROLE IN CELL- TITLE 3 CELL ADHESION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SODIUM CHANNEL SUBUNIT BETA-4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: EXTRACELLULA DOMAIN, UNP RESIDUES 30-160; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SCN4B, GM1471; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3)PLYSS AG KEYWDS IG, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR H.SHIMIZU,S.YOKOYAMA REVDAT 3 22-NOV-23 5XAX 1 REMARK REVDAT 2 30-AUG-17 5XAX 1 JRNL REVDAT 1 05-JUL-17 5XAX 0 JRNL AUTH H.SHIMIZU,A.TOSAKI,N.OHSAWA,Y.ISHIZUKA-KATSURA,S.SHOJI, JRNL AUTH 2 H.MIYAZAKI,F.OYAMA,T.TERADA,M.SHIROUZU,S.I.SEKINE,N.NUKINA, JRNL AUTH 3 S.YOKOYAMA JRNL TITL PARALLEL HOMODIMER STRUCTURES OF THE EXTRACELLULAR DOMAINS JRNL TITL 2 OF THE VOLTAGE-GATED SODIUM CHANNEL BETA 4 SUBUNIT EXPLAIN JRNL TITL 3 ITS ROLE IN CELL-CELL ADHESION JRNL REF J. BIOL. CHEM. V. 292 13428 2017 JRNL REFN ESSN 1083-351X JRNL PMID 28655765 JRNL DOI 10.1074/JBC.M117.786509 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 8526 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.252 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 853 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.1594 - 5.2693 0.98 1306 149 0.2329 0.2734 REMARK 3 2 5.2693 - 4.1846 1.00 1288 144 0.2064 0.2645 REMARK 3 3 4.1846 - 3.6562 1.00 1273 140 0.2629 0.3184 REMARK 3 4 3.6562 - 3.3222 1.00 1267 139 0.2788 0.3445 REMARK 3 5 3.3222 - 3.0843 1.00 1272 139 0.3086 0.3691 REMARK 3 6 3.0843 - 2.9025 1.00 1267 142 0.3460 0.3917 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1917 REMARK 3 ANGLE : 0.978 2590 REMARK 3 CHIRALITY : 0.053 305 REMARK 3 PLANARITY : 0.005 327 REMARK 3 DIHEDRAL : 7.537 1149 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XAX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1300003156. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8526 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 35.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 5AYQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.7M NA-MALONATE, 0.1M TRIS-HCL (PH REMARK 280 7.0), 0.5 % (V/V) TWEEN 20, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 65.77250 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 65.77250 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 65.77250 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 65.77250 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 65.77250 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 65.77250 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 65.77250 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 65.77250 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 65.77250 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 65.77250 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 65.77250 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 65.77250 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 65.77250 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 65.77250 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 65.77250 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 65.77250 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 65.77250 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 65.77250 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 65.77250 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 65.77250 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 65.77250 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 65.77250 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 65.77250 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 65.77250 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 65.77250 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 65.77250 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 65.77250 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 65.77250 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 65.77250 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 65.77250 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 65.77250 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 65.77250 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 65.77250 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 65.77250 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 65.77250 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 65.77250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 26 REMARK 465 PRO A 27 REMARK 465 LEU A 28 REMARK 465 GLY A 29 REMARK 465 THR A 107 REMARK 465 LYS A 108 REMARK 465 GLU A 109 REMARK 465 LYS A 110 REMARK 465 PRO A 136 REMARK 465 LYS A 137 REMARK 465 GLU A 138 REMARK 465 LYS A 139 REMARK 465 GLU A 156 REMARK 465 LYS A 157 REMARK 465 VAL A 158 REMARK 465 ASP A 159 REMARK 465 ASN A 160 REMARK 465 HIS A 161 REMARK 465 HIS A 162 REMARK 465 HIS A 163 REMARK 465 HIS A 164 REMARK 465 HIS A 165 REMARK 465 GLY B 26 REMARK 465 PRO B 27 REMARK 465 LEU B 28 REMARK 465 GLY B 29 REMARK 465 GLY B 105 REMARK 465 SER B 106 REMARK 465 THR B 107 REMARK 465 LYS B 108 REMARK 465 GLU B 109 REMARK 465 LYS B 110 REMARK 465 PRO B 136 REMARK 465 LYS B 137 REMARK 465 GLU B 138 REMARK 465 LYS B 139 REMARK 465 ASP B 140 REMARK 465 LEU B 141 REMARK 465 ASN B 142 REMARK 465 HIS B 163 REMARK 465 HIS B 164 REMARK 465 HIS B 165 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 96 O ILE A 101 2.15 REMARK 500 OD1 ASN A 113 OG SER A 115 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 62 -163.29 -78.89 REMARK 500 LEU A 79 -63.60 -97.11 REMARK 500 ARG A 94 -60.01 -103.55 REMARK 500 ASN A 142 60.12 37.53 REMARK 500 ASN B 86 -174.94 -176.85 REMARK 500 ASP B 98 -84.67 -43.38 REMARK 500 ASP B 99 -11.47 -146.17 REMARK 500 ASP B 159 -70.55 -42.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 97 ASP B 98 -132.33 REMARK 500 VAL B 158 ASP B 159 -140.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5XAW RELATED DB: PDB DBREF 5XAX A 30 160 UNP Q7M729 SCN4B_MOUSE 30 160 DBREF 5XAX B 30 160 UNP Q7M729 SCN4B_MOUSE 30 160 SEQADV 5XAX GLY A 26 UNP Q7M729 EXPRESSION TAG SEQADV 5XAX PRO A 27 UNP Q7M729 EXPRESSION TAG SEQADV 5XAX LEU A 28 UNP Q7M729 EXPRESSION TAG SEQADV 5XAX GLY A 29 UNP Q7M729 EXPRESSION TAG SEQADV 5XAX HIS A 161 UNP Q7M729 EXPRESSION TAG SEQADV 5XAX HIS A 162 UNP Q7M729 EXPRESSION TAG SEQADV 5XAX HIS A 163 UNP Q7M729 EXPRESSION TAG SEQADV 5XAX HIS A 164 UNP Q7M729 EXPRESSION TAG SEQADV 5XAX HIS A 165 UNP Q7M729 EXPRESSION TAG SEQADV 5XAX GLY B 26 UNP Q7M729 EXPRESSION TAG SEQADV 5XAX PRO B 27 UNP Q7M729 EXPRESSION TAG SEQADV 5XAX LEU B 28 UNP Q7M729 EXPRESSION TAG SEQADV 5XAX GLY B 29 UNP Q7M729 EXPRESSION TAG SEQADV 5XAX HIS B 161 UNP Q7M729 EXPRESSION TAG SEQADV 5XAX HIS B 162 UNP Q7M729 EXPRESSION TAG SEQADV 5XAX HIS B 163 UNP Q7M729 EXPRESSION TAG SEQADV 5XAX HIS B 164 UNP Q7M729 EXPRESSION TAG SEQADV 5XAX HIS B 165 UNP Q7M729 EXPRESSION TAG SEQRES 1 A 140 GLY PRO LEU GLY SER LEU GLU VAL SER VAL GLY LYS ALA SEQRES 2 A 140 THR THR ILE TYR ALA ILE ASN GLY SER SER ILE LEU LEU SEQRES 3 A 140 PRO CYS THR PHE SER SER CYS TYR GLY PHE GLU ASN LEU SEQRES 4 A 140 TYR PHE LYS TRP SER TYR ASN ASN SER GLU THR SER ARG SEQRES 5 A 140 ILE LEU ILE ASP GLY ILE VAL LYS ASN ASP LYS SER ASP SEQRES 6 A 140 PRO LYS VAL ARG VAL LYS ASP ASP ASP ARG ILE THR LEU SEQRES 7 A 140 GLU GLY SER THR LYS GLU LYS THR ASN ASN ILE SER ILE SEQRES 8 A 140 LEU LEU SER ASP LEU GLU PHE SER ASP THR GLY ARG TYR SEQRES 9 A 140 THR CYS PHE VAL ARG ASN PRO LYS GLU LYS ASP LEU ASN SEQRES 10 A 140 ASN SER ALA THR ILE PHE LEU GLN VAL VAL ASP LYS LEU SEQRES 11 A 140 GLU LYS VAL ASP ASN HIS HIS HIS HIS HIS SEQRES 1 B 140 GLY PRO LEU GLY SER LEU GLU VAL SER VAL GLY LYS ALA SEQRES 2 B 140 THR THR ILE TYR ALA ILE ASN GLY SER SER ILE LEU LEU SEQRES 3 B 140 PRO CYS THR PHE SER SER CYS TYR GLY PHE GLU ASN LEU SEQRES 4 B 140 TYR PHE LYS TRP SER TYR ASN ASN SER GLU THR SER ARG SEQRES 5 B 140 ILE LEU ILE ASP GLY ILE VAL LYS ASN ASP LYS SER ASP SEQRES 6 B 140 PRO LYS VAL ARG VAL LYS ASP ASP ASP ARG ILE THR LEU SEQRES 7 B 140 GLU GLY SER THR LYS GLU LYS THR ASN ASN ILE SER ILE SEQRES 8 B 140 LEU LEU SER ASP LEU GLU PHE SER ASP THR GLY ARG TYR SEQRES 9 B 140 THR CYS PHE VAL ARG ASN PRO LYS GLU LYS ASP LEU ASN SEQRES 10 B 140 ASN SER ALA THR ILE PHE LEU GLN VAL VAL ASP LYS LEU SEQRES 11 B 140 GLU LYS VAL ASP ASN HIS HIS HIS HIS HIS HET GOL A 201 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 HELIX 1 AA1 GLU A 122 THR A 126 5 5 HELIX 2 AA2 GLU B 122 THR B 126 5 5 SHEET 1 AA1 3 GLU A 32 SER A 34 0 SHEET 2 AA1 3 THR B 54 SER B 56 -1 O THR B 54 N SER A 34 SHEET 3 AA1 3 ASN B 112 ASN B 113 -1 O ASN B 112 N PHE B 55 SHEET 1 AA2 6 ALA A 38 ILE A 44 0 SHEET 2 AA2 6 ASN A 143 VAL A 152 1 O VAL A 152 N ALA A 43 SHEET 3 AA2 6 GLY A 127 ARG A 134 -1 N TYR A 129 O ILE A 147 SHEET 4 AA2 6 LEU A 64 ASN A 71 -1 N SER A 69 O THR A 130 SHEET 5 AA2 6 SER A 76 VAL A 84 -1 O LEU A 79 N TRP A 68 SHEET 6 AA2 6 PRO A 91 LYS A 96 -1 O LYS A 92 N ILE A 83 SHEET 1 AA3 3 ILE A 49 LEU A 51 0 SHEET 2 AA3 3 ILE A 116 LEU A 118 -1 O LEU A 118 N ILE A 49 SHEET 3 AA3 3 ILE A 101 LEU A 103 -1 N THR A 102 O LEU A 117 SHEET 1 AA4 3 ASN A 112 ASN A 113 0 SHEET 2 AA4 3 THR A 54 SER A 56 -1 N PHE A 55 O ASN A 112 SHEET 3 AA4 3 GLU B 32 SER B 34 -1 O GLU B 32 N SER A 56 SHEET 1 AA5 6 ALA B 38 ILE B 44 0 SHEET 2 AA5 6 SER B 144 VAL B 152 1 O VAL B 152 N ALA B 43 SHEET 3 AA5 6 GLY B 127 VAL B 133 -1 N TYR B 129 O ILE B 147 SHEET 4 AA5 6 LEU B 64 ASN B 71 -1 N ASN B 71 O ARG B 128 SHEET 5 AA5 6 SER B 76 VAL B 84 -1 O ARG B 77 N TYR B 70 SHEET 6 AA5 6 LYS B 92 VAL B 93 -1 O LYS B 92 N ILE B 83 SHEET 1 AA6 3 ILE B 49 LEU B 51 0 SHEET 2 AA6 3 ILE B 116 LEU B 118 -1 O LEU B 118 N ILE B 49 SHEET 3 AA6 3 THR B 102 LEU B 103 -1 N THR B 102 O LEU B 117 SSBOND 1 CYS A 58 CYS B 58 1555 1555 2.02 SITE 1 AC1 4 TYR A 42 VAL A 152 ASP A 153 LYS B 154 CRYST1 131.545 131.545 131.545 90.00 90.00 90.00 I 2 3 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007602 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007602 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007602 0.00000