HEADER MOTOR PROTEIN, PROTEIN TRANSPORT/STRUCTU17-MAR-17 5XBF TITLE CRYSTAL STRUCTURE OF MYO7B C-TERMINAL MYTH4-FERM IN COMPLEX WITH USH1C TITLE 2 PDZ3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCONVENTIONAL MYOSIN-VIIB; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1601-2116; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HARMONIN; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 428-552; COMPND 10 SYNONYM: ANTIGEN NY-CO-38/NY-CO-37,AUTOIMMUNE ENTEROPATHY-RELATED COMPND 11 ANTIGEN AIE-75,PROTEIN PDZ-73,RENAL CARCINOMA ANTIGEN NY-REN-3,USHER COMPND 12 SYNDROME TYPE-1C PROTEIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MYO7B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: USH1C, AIE75; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN COMPLEX, MOLECULAR MOTOR, MOTOR PROTEIN, PROTEIN TRANSPORT- KEYWDS 2 STRUCTURAL PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.LI,Y.HE,W.L.WECK,Q.LU,M.J.TYSKA,M.ZHANG REVDAT 3 27-MAR-24 5XBF 1 REMARK REVDAT 2 06-DEC-17 5XBF 1 JRNL REVDAT 1 17-MAY-17 5XBF 0 JRNL AUTH J.LI,Y.HE,M.L.WECK,Q.LU,M.J.TYSKA,M.ZHANG JRNL TITL STRUCTURE OF MYO7B/USH1C COMPLEX SUGGESTS A GENERAL PDZ JRNL TITL 2 DOMAIN BINDING MODE BY MYTH4-FERM MYOSINS. JRNL REF PROC. NATL. ACAD. SCI. V. 114 E3776 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28439001 JRNL DOI 10.1073/PNAS.1702251114 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 63626 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 3147 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.2998 - 5.0434 0.97 2825 149 0.1716 0.1861 REMARK 3 2 5.0434 - 4.0049 0.98 2789 148 0.1513 0.1634 REMARK 3 3 4.0049 - 3.4991 0.97 2707 141 0.1711 0.1849 REMARK 3 4 3.4991 - 3.1794 0.98 2761 143 0.1931 0.2282 REMARK 3 5 3.1794 - 2.9517 0.99 2765 142 0.1934 0.2189 REMARK 3 6 2.9517 - 2.7777 0.99 2760 139 0.1935 0.1958 REMARK 3 7 2.7777 - 2.6387 0.99 2706 157 0.1912 0.2278 REMARK 3 8 2.6387 - 2.5238 0.99 2752 144 0.1926 0.2196 REMARK 3 9 2.5238 - 2.4267 1.00 2769 141 0.1945 0.2265 REMARK 3 10 2.4267 - 2.3430 0.99 2708 158 0.1952 0.2272 REMARK 3 11 2.3430 - 2.2697 0.99 2750 152 0.1948 0.2364 REMARK 3 12 2.2697 - 2.2049 0.99 2751 149 0.1948 0.2296 REMARK 3 13 2.2049 - 2.1468 1.00 2742 136 0.1943 0.2241 REMARK 3 14 2.1468 - 2.0944 1.00 2765 133 0.1901 0.2161 REMARK 3 15 2.0944 - 2.0468 1.00 2748 137 0.1981 0.2453 REMARK 3 16 2.0468 - 2.0033 1.00 2764 138 0.2080 0.2218 REMARK 3 17 2.0033 - 1.9632 1.00 2738 147 0.2144 0.2715 REMARK 3 18 1.9632 - 1.9262 1.00 2736 146 0.2234 0.2543 REMARK 3 19 1.9262 - 1.8918 1.00 2727 133 0.2232 0.2604 REMARK 3 20 1.8918 - 1.8597 1.00 2788 129 0.2384 0.2805 REMARK 3 21 1.8597 - 1.8297 1.00 2748 126 0.2560 0.2764 REMARK 3 22 1.8297 - 1.8016 0.98 2680 159 0.2716 0.3025 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4764 REMARK 3 ANGLE : 0.997 6486 REMARK 3 CHIRALITY : 0.066 729 REMARK 3 PLANARITY : 0.006 826 REMARK 3 DIHEDRAL : 5.772 3875 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1607 THROUGH 1678 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.3257 4.6425 -9.1260 REMARK 3 T TENSOR REMARK 3 T11: 0.6360 T22: 0.7015 REMARK 3 T33: 0.4229 T12: 0.0004 REMARK 3 T13: 0.2475 T23: -0.1496 REMARK 3 L TENSOR REMARK 3 L11: 2.0921 L22: 1.4180 REMARK 3 L33: 2.4448 L12: 0.8232 REMARK 3 L13: -0.6545 L23: -1.0945 REMARK 3 S TENSOR REMARK 3 S11: 0.1746 S12: 0.1539 S13: -0.0926 REMARK 3 S21: -0.5414 S22: 0.1050 S23: -0.6143 REMARK 3 S31: -0.1100 S32: 1.0473 S33: -0.1204 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1679 THROUGH 1903 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0868 8.7721 10.5675 REMARK 3 T TENSOR REMARK 3 T11: 0.3310 T22: 0.2385 REMARK 3 T33: 0.2359 T12: -0.0323 REMARK 3 T13: -0.0013 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 0.5699 L22: 0.9140 REMARK 3 L33: 4.5760 L12: -0.4984 REMARK 3 L13: -0.8760 L23: 0.9932 REMARK 3 S TENSOR REMARK 3 S11: 0.0901 S12: 0.1119 S13: 0.0543 REMARK 3 S21: -0.1773 S22: 0.0782 S23: -0.1585 REMARK 3 S31: 0.0978 S32: 0.3109 S33: -0.1580 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1904 THROUGH 2100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4256 11.3202 47.0130 REMARK 3 T TENSOR REMARK 3 T11: 0.2151 T22: 0.1431 REMARK 3 T33: 0.2203 T12: -0.0369 REMARK 3 T13: -0.0337 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 2.3318 L22: 0.5583 REMARK 3 L33: 1.2645 L12: 0.0376 REMARK 3 L13: -0.6722 L23: -0.0854 REMARK 3 S TENSOR REMARK 3 S11: 0.0280 S12: -0.0927 S13: 0.0191 REMARK 3 S21: 0.0264 S22: 0.0070 S23: -0.0345 REMARK 3 S31: -0.1557 S32: 0.0626 S33: -0.0269 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 432 THROUGH 444 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.2345 -14.2788 48.1266 REMARK 3 T TENSOR REMARK 3 T11: 0.5128 T22: 0.4007 REMARK 3 T33: 0.5490 T12: -0.0398 REMARK 3 T13: -0.0513 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 6.6849 L22: 5.0597 REMARK 3 L33: 7.7330 L12: -0.7087 REMARK 3 L13: 1.4599 L23: -0.3607 REMARK 3 S TENSOR REMARK 3 S11: 0.0047 S12: -0.2672 S13: -1.0624 REMARK 3 S21: 0.0561 S22: 0.0704 S23: -0.3587 REMARK 3 S31: 1.3819 S32: -0.0909 S33: -0.0735 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 445 THROUGH 465 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.8136 -10.1767 40.5446 REMARK 3 T TENSOR REMARK 3 T11: 0.4302 T22: 0.4251 REMARK 3 T33: 0.3243 T12: -0.1619 REMARK 3 T13: 0.0386 T23: -0.0790 REMARK 3 L TENSOR REMARK 3 L11: 2.2377 L22: 1.0577 REMARK 3 L33: 5.2298 L12: -1.4924 REMARK 3 L13: 0.2042 L23: -0.5816 REMARK 3 S TENSOR REMARK 3 S11: -0.4693 S12: 0.2448 S13: -0.4137 REMARK 3 S21: -0.5439 S22: 0.2400 S23: -0.0694 REMARK 3 S31: 0.1953 S32: -0.2705 S33: 0.2834 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 466 THROUGH 484 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.8063 2.2906 37.4175 REMARK 3 T TENSOR REMARK 3 T11: 0.2129 T22: 0.3118 REMARK 3 T33: 0.2344 T12: -0.1024 REMARK 3 T13: -0.0060 T23: 0.0467 REMARK 3 L TENSOR REMARK 3 L11: 6.2324 L22: 4.8616 REMARK 3 L33: 5.7900 L12: -4.0978 REMARK 3 L13: -0.7457 L23: 3.5669 REMARK 3 S TENSOR REMARK 3 S11: 0.0869 S12: 0.2869 S13: 0.2799 REMARK 3 S21: -0.2081 S22: -0.0366 S23: -0.3298 REMARK 3 S31: -0.0363 S32: -0.2943 S33: -0.0032 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 485 THROUGH 527 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.5711 -5.0284 34.5998 REMARK 3 T TENSOR REMARK 3 T11: 0.3360 T22: 0.4467 REMARK 3 T33: 0.3359 T12: -0.1310 REMARK 3 T13: 0.0800 T23: -0.0903 REMARK 3 L TENSOR REMARK 3 L11: 1.4632 L22: 2.4269 REMARK 3 L33: 2.2206 L12: 0.8867 REMARK 3 L13: 0.8446 L23: 0.0475 REMARK 3 S TENSOR REMARK 3 S11: -0.5310 S12: 0.7409 S13: -0.5327 REMARK 3 S21: -0.6559 S22: 0.2984 S23: -0.3649 REMARK 3 S31: 0.4977 S32: 0.0100 S33: 0.1113 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 528 THROUGH 538 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.9688 -12.0016 34.4512 REMARK 3 T TENSOR REMARK 3 T11: 0.4944 T22: 0.6564 REMARK 3 T33: 0.4113 T12: -0.0485 REMARK 3 T13: 0.1849 T23: -0.1712 REMARK 3 L TENSOR REMARK 3 L11: 1.5270 L22: 3.7776 REMARK 3 L33: 4.2715 L12: -2.3403 REMARK 3 L13: 1.1388 L23: -0.9250 REMARK 3 S TENSOR REMARK 3 S11: -0.0858 S12: 0.8948 S13: -0.3615 REMARK 3 S21: -1.1930 S22: -0.1847 S23: -0.7397 REMARK 3 S31: 0.3013 S32: 0.6726 S33: 0.3130 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 539 THROUGH 552 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5967 -0.1182 43.0710 REMARK 3 T TENSOR REMARK 3 T11: 0.2241 T22: 0.2359 REMARK 3 T33: 0.3044 T12: -0.0455 REMARK 3 T13: -0.0075 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 6.5418 L22: 8.1035 REMARK 3 L33: 1.4089 L12: -6.7063 REMARK 3 L13: 2.4965 L23: -3.1601 REMARK 3 S TENSOR REMARK 3 S11: 0.1230 S12: -0.1360 S13: -0.3470 REMARK 3 S21: -0.1608 S22: -0.0146 S23: 0.2844 REMARK 3 S31: -0.0028 S32: 0.0322 S33: -0.1635 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XBF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1300002585. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63640 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.49200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% TACSIMATE, PH 7.0 AND 20% V/W PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 299K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.26850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1601 REMARK 465 GLU A 1602 REMARK 465 PRO A 1603 REMARK 465 PRO A 1604 REMARK 465 LYS A 1605 REMARK 465 GLU A 1606 REMARK 465 GLU A 1623 REMARK 465 LYS A 1624 REMARK 465 ASP A 1625 REMARK 465 MET A 1626 REMARK 465 VAL A 1627 REMARK 465 SER A 1628 REMARK 465 MET A 1629 REMARK 465 ALA A 1630 REMARK 465 VAL A 1631 REMARK 465 LEU A 1632 REMARK 465 PRO A 1633 REMARK 465 LEU A 1634 REMARK 465 ALA A 1635 REMARK 465 ARG A 1636 REMARK 465 ALA A 1637 REMARK 465 ARG A 1638 REMARK 465 GLY A 1639 REMARK 465 PRO A 1875 REMARK 465 GLN A 1876 REMARK 465 LYS A 1877 REMARK 465 GLU A 1878 REMARK 465 GLY A 1879 REMARK 465 ALA A 1880 REMARK 465 PRO A 1881 REMARK 465 LEU A 2071 REMARK 465 GLY A 2072 REMARK 465 ARG A 2073 REMARK 465 ALA A 2101 REMARK 465 MET A 2102 REMARK 465 ASN A 2103 REMARK 465 LYS A 2104 REMARK 465 GLN A 2105 REMARK 465 ARG A 2106 REMARK 465 GLY A 2107 REMARK 465 SER A 2108 REMARK 465 LYS A 2109 REMARK 465 ALA A 2110 REMARK 465 PRO A 2111 REMARK 465 ALA A 2112 REMARK 465 LEU A 2113 REMARK 465 ALA A 2114 REMARK 465 SER A 2115 REMARK 465 THR A 2116 REMARK 465 GLN B 428 REMARK 465 ASP B 429 REMARK 465 PHE B 430 REMARK 465 ARG B 431 REMARK 465 GLU B 486 REMARK 465 ARG B 487 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A1607 CG CD CE NZ REMARK 470 GLU A1613 CG CD OE1 OE2 REMARK 470 GLU A1647 CG CD OE1 OE2 REMARK 470 ARG A1650 NE CZ NH1 NH2 REMARK 470 LYS A1655 CG CD CE NZ REMARK 470 ARG A1684 CG CD NE CZ NH1 NH2 REMARK 470 GLN A1685 CG CD OE1 NE2 REMARK 470 LYS A1745 CG CD CE NZ REMARK 470 LYS A1753 CG CD CE NZ REMARK 470 ARG A1759 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1776 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1849 CE NZ REMARK 470 LYS A1871 CG CD CE NZ REMARK 470 LYS A1872 CG CD CE NZ REMARK 470 ASN A1873 CG OD1 ND2 REMARK 470 LYS A1874 CG CD CE NZ REMARK 470 ASN A1897 CG OD1 ND2 REMARK 470 LYS A1902 CG CD CE NZ REMARK 470 LYS A1955 CE NZ REMARK 470 ARG A1958 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1986 CG CD CE NZ REMARK 470 ARG A2003 NE CZ NH1 NH2 REMARK 470 ARG A2076 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 432 CG CD CE NZ REMARK 470 TYR B 433 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 446 CG CD OE1 OE2 REMARK 470 MET B 449 CG SD CE REMARK 470 ARG B 457 NE CZ NH1 NH2 REMARK 470 LYS B 459 CG CD CE NZ REMARK 470 LYS B 460 CG CD CE NZ REMARK 470 GLU B 461 CG CD OE1 OE2 REMARK 470 GLU B 491 CG CD OE1 OE2 REMARK 470 ARG B 492 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 508 CG CD CE NZ REMARK 470 ASP B 531 CG OD1 OD2 REMARK 470 TRP B 532 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 532 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2394 O HOH A 2442 2.13 REMARK 500 OD1 ASP A 1868 O HOH A 2301 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A1926 CB CYS A1926 SG -0.136 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1944 -110.97 54.14 REMARK 500 TYR B 433 -4.03 -140.32 REMARK 500 GLU B 544 48.25 -97.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 2201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 2202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLT A 2203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 2204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 601 DBREF 5XBF A 1601 2116 UNP Q6PIF6 MYO7B_HUMAN 1601 2116 DBREF 5XBF B 428 552 UNP Q9Y6N9 USH1C_HUMAN 428 552 SEQRES 1 A 516 GLU GLU PRO PRO LYS GLU LYS LEU HIS THR LEU GLU GLU SEQRES 2 A 516 PHE SER TYR GLU PHE PHE ARG ALA PRO GLU LYS ASP MET SEQRES 3 A 516 VAL SER MET ALA VAL LEU PRO LEU ALA ARG ALA ARG GLY SEQRES 4 A 516 HIS LEU TRP ALA TYR SER CYS GLU PRO LEU ARG GLN PRO SEQRES 5 A 516 LEU LEU LYS ARG VAL HIS ALA ASN VAL ASP LEU TRP ASP SEQRES 6 A 516 ILE ALA CYS GLN ILE PHE VAL ALA ILE LEU ARG TYR MET SEQRES 7 A 516 GLY ASP TYR PRO SER ARG GLN ALA TRP PRO THR LEU GLU SEQRES 8 A 516 LEU THR ASP GLN ILE PHE THR LEU ALA LEU GLN HIS PRO SEQRES 9 A 516 ALA LEU GLN ASP GLU VAL TYR CYS GLN ILE LEU LYS GLN SEQRES 10 A 516 LEU THR HIS ASN SER ASN ARG HIS SER GLU GLU ARG GLY SEQRES 11 A 516 TRP GLN LEU LEU TRP LEU CYS THR GLY LEU PHE PRO PRO SEQRES 12 A 516 SER LYS GLY LEU LEU PRO HIS ALA GLN LYS PHE ILE ASP SEQRES 13 A 516 THR ARG ARG GLY LYS LEU LEU ALA PRO ASP CYS SER ARG SEQRES 14 A 516 ARG ILE GLN LYS VAL LEU ARG THR GLY PRO ARG LYS GLN SEQRES 15 A 516 PRO PRO HIS GLN VAL GLU VAL GLU ALA ALA GLU GLN ASN SEQRES 16 A 516 VAL SER ARG ILE CYS HIS LYS ILE TYR PHE PRO ASN ASP SEQRES 17 A 516 THR SER GLU MET LEU GLU VAL VAL ALA ASN THR ARG VAL SEQRES 18 A 516 ARG ASP VAL CYS ASP SER ILE ALA THR ARG LEU GLN LEU SEQRES 19 A 516 ALA SER TRP GLU GLY CYS SER LEU PHE ILE LYS ILE SER SEQRES 20 A 516 ASP LYS VAL ILE SER GLN LYS GLU GLY ASP PHE PHE PHE SEQRES 21 A 516 ASP SER LEU ARG GLU VAL SER ASP TRP VAL LYS LYS ASN SEQRES 22 A 516 LYS PRO GLN LYS GLU GLY ALA PRO VAL THR LEU PRO TYR SEQRES 23 A 516 GLN VAL TYR PHE MET ARG LYS LEU TRP LEU ASN ILE SER SEQRES 24 A 516 PRO GLY LYS ASP VAL ASN ALA ASP THR ILE LEU HIS TYR SEQRES 25 A 516 HIS GLN GLU LEU PRO LYS TYR LEU ARG GLY PHE HIS LYS SEQRES 26 A 516 CYS SER ARG GLU ASP ALA ILE HIS LEU ALA GLY LEU ILE SEQRES 27 A 516 TYR LYS ALA GLN PHE ASN ASN ASP ARG SER GLN LEU ALA SEQRES 28 A 516 SER VAL PRO LYS ILE LEU ARG GLU LEU VAL PRO GLU ASN SEQRES 29 A 516 LEU THR ARG LEU MET SER SER GLU GLU TRP LYS LYS SER SEQRES 30 A 516 ILE LEU LEU ALA TYR ASP LYS HIS LYS ASP LYS THR VAL SEQRES 31 A 516 GLU GLU ALA LYS VAL ALA PHE LEU LYS TRP ILE CYS ARG SEQRES 32 A 516 TRP PRO THR PHE GLY SER ALA PHE PHE GLU VAL LYS GLN SEQRES 33 A 516 THR SER GLU PRO SER TYR PRO ASP VAL ILE LEU ILE ALA SEQRES 34 A 516 ILE ASN ARG HIS GLY VAL LEU LEU ILE HIS PRO LYS THR SEQRES 35 A 516 LYS ASP LEU LEU THR THR TYR PRO PHE THR LYS ILE SER SEQRES 36 A 516 SER TRP SER SER GLY SER THR TYR PHE HIS MET ALA LEU SEQRES 37 A 516 GLY SER LEU GLY ARG GLY SER ARG LEU LEU CYS GLU THR SEQRES 38 A 516 SER LEU GLY TYR LYS MET ASP ASP LEU LEU THR SER TYR SEQRES 39 A 516 VAL GLN GLN LEU LEU SER ALA MET ASN LYS GLN ARG GLY SEQRES 40 A 516 SER LYS ALA PRO ALA LEU ALA SER THR SEQRES 1 B 125 GLN ASP PHE ARG LYS TYR GLU GLU GLY PHE ASP PRO TYR SEQRES 2 B 125 SER MET PHE THR PRO GLU GLN ILE MET GLY LYS ASP VAL SEQRES 3 B 125 ARG LEU LEU ARG ILE LYS LYS GLU GLY SER LEU ASP LEU SEQRES 4 B 125 ALA LEU GLU GLY GLY VAL ASP SER PRO ILE GLY LYS VAL SEQRES 5 B 125 VAL VAL SER ALA VAL TYR GLU ARG GLY ALA ALA GLU ARG SEQRES 6 B 125 HIS GLY GLY ILE VAL LYS GLY ASP GLU ILE MET ALA ILE SEQRES 7 B 125 ASN GLY LYS ILE VAL THR ASP TYR THR LEU ALA GLU ALA SEQRES 8 B 125 GLU ALA ALA LEU GLN LYS ALA TRP ASN GLN GLY GLY ASP SEQRES 9 B 125 TRP ILE ASP LEU VAL VAL ALA VAL CYS PRO PRO LYS GLU SEQRES 10 B 125 TYR ASP ASP GLU LEU THR PHE PHE HET GOL A2201 6 HET GOL A2202 6 HET MLT A2203 9 HET ACT A2204 4 HET GOL B 601 6 HETNAM GOL GLYCEROL HETNAM MLT D-MALATE HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN MLT (2R)-2-HYDROXYBUTANEDIOIC ACID; 2-HYDROXY-SUCCINIC ACID FORMUL 3 GOL 3(C3 H8 O3) FORMUL 5 MLT C4 H6 O5 FORMUL 6 ACT C2 H3 O2 1- FORMUL 8 HOH *265(H2 O) HELIX 1 AA1 LEU A 1611 PHE A 1619 1 9 HELIX 2 AA2 LEU A 1654 ALA A 1659 1 6 HELIX 3 AA3 ASN A 1660 ASP A 1662 5 3 HELIX 4 AA4 LEU A 1663 MET A 1678 1 16 HELIX 5 AA5 PRO A 1688 HIS A 1703 1 16 HELIX 6 AA6 PRO A 1704 LEU A 1718 1 15 HELIX 7 AA7 ASN A 1723 GLY A 1739 1 17 HELIX 8 AA8 LEU A 1747 THR A 1757 1 11 HELIX 9 AA9 LEU A 1763 GLY A 1778 1 16 HELIX 10 AB1 HIS A 1785 GLN A 1794 1 10 HELIX 11 AB2 ARG A 1820 GLN A 1833 1 14 HELIX 12 AB3 PHE A 1858 LYS A 1874 1 17 HELIX 13 AB4 ASP A 1903 LEU A 1910 1 8 HELIX 14 AB5 LEU A 1910 ARG A 1921 1 12 HELIX 15 AB6 SER A 1927 ASN A 1944 1 18 HELIX 16 AB7 ASP A 1946 ALA A 1951 5 6 HELIX 17 AB8 SER A 1952 LEU A 1957 1 6 HELIX 18 AB9 ARG A 1958 LEU A 1960 5 3 HELIX 19 AC1 LEU A 1965 MET A 1969 5 5 HELIX 20 AC2 SER A 1970 ASP A 1983 1 14 HELIX 21 AC3 LYS A 1984 LYS A 1986 5 3 HELIX 22 AC4 THR A 1989 CYS A 2002 1 14 HELIX 23 AC5 PRO A 2050 THR A 2052 5 3 HELIX 24 AC6 LEU A 2083 SER A 2100 1 18 HELIX 25 AC7 ASP B 438 MET B 442 5 5 HELIX 26 AC8 THR B 444 MET B 449 1 6 HELIX 27 AC9 TYR B 485 TYR B 485 1 1 HELIX 28 AD1 ALA B 489 GLY B 494 1 6 HELIX 29 AD2 THR B 514 GLN B 528 1 15 SHEET 1 AA1 2 ILE A1799 PHE A1805 0 SHEET 2 AA1 2 THR A1809 VAL A1815 -1 O LEU A1813 N HIS A1801 SHEET 1 AA2 3 LYS A1849 SER A1852 0 SHEET 2 AA2 3 CYS A1840 ILE A1846 -1 N ILE A1844 O ILE A1851 SHEET 3 AA2 3 TYR A1886 ARG A1892 -1 O GLN A1887 N LYS A1845 SHEET 1 AA3 7 LEU A2045 TYR A2049 0 SHEET 2 AA3 7 GLY A2034 ILE A2038 -1 N VAL A2035 O TYR A2049 SHEET 3 AA3 7 VAL A2025 ASN A2031 -1 N LEU A2027 O ILE A2038 SHEET 4 AA3 7 ALA A2010 GLN A2016 -1 N PHE A2012 O ILE A2028 SHEET 5 AA3 7 SER A2075 GLU A2080 -1 O GLU A2080 N LYS A2015 SHEET 6 AA3 7 TYR A2063 LEU A2068 -1 N LEU A2068 O SER A2075 SHEET 7 AA3 7 ILE A2054 SER A2059 -1 N SER A2056 O ALA A2067 SHEET 1 AA4 4 VAL B 453 LYS B 459 0 SHEET 2 AA4 4 TRP B 532 ALA B 538 -1 O ILE B 533 N ILE B 458 SHEET 3 AA4 4 GLU B 501 ILE B 505 -1 N MET B 503 O VAL B 536 SHEET 4 AA4 4 LYS B 508 ILE B 509 -1 O LYS B 508 N ILE B 505 SHEET 1 AA5 2 LEU B 466 GLY B 470 0 SHEET 2 AA5 2 VAL B 479 VAL B 484 -1 O SER B 482 N ALA B 467 SITE 1 AC1 3 PRO A1806 LYS A1845 TYR A1889 SITE 1 AC2 5 PHE A1805 ASN A1807 THR A1809 GLU A1811 SITE 2 AC2 5 LEU A1832 SITE 1 AC3 3 TRP A2057 HOH A2306 HIS B 493 SITE 1 AC4 3 PRO A2020 TYR A2022 ASP A2024 SITE 1 AC5 4 TYR B 513 GLU B 517 HOH B 712 HOH B 713 CRYST1 69.634 42.537 118.390 90.00 97.51 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014361 0.000000 0.001892 0.00000 SCALE2 0.000000 0.023509 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008520 0.00000