HEADER OXIDOREDUCTASE 21-MAR-17 5XBS TITLE PEROXIREDOXIN FROM AEROPYRUM PERNIX (6M MUTANT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXIREDOXIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: THIOREDOXIN PEROXIDASE,APTPX; COMPND 5 EC: 1.11.1.15; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEROPYRUM PERNIX (STRAIN ATCC 700893 / DSM SOURCE 3 11879 / JCM 9820 / NBRC 100138 / K1); SOURCE 4 ORGANISM_TAXID: 272557; SOURCE 5 STRAIN: ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1; SOURCE 6 GENE: APE_2278; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DIMER, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.NAKAMURA,K.UEGAKI REVDAT 1 31-JAN-18 5XBS 0 JRNL AUTH T.NAKAMURA,M.OSHIMA,M.YASUDA,A.SHIMAMURA,J.MORITA,K.UEGAKI JRNL TITL ALTERATION OF MOLECULAR ASSEMBLY OF PEROXIREDOXINS FROM JRNL TITL 2 HYPERTHERMOPHILIC ARCHAEA JRNL REF J. BIOCHEM. V. 162 415 2017 JRNL REFN ISSN 1756-2651 JRNL PMID 28992240 JRNL DOI 10.1093/JB/MVX045 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 84.2 REMARK 3 NUMBER OF REFLECTIONS : 26722 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1433 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.51 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1674 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.4400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7771 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : 0.94000 REMARK 3 B33 (A**2) : -0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.17000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.225 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.645 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.864 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7981 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7618 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10844 ; 1.553 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 17476 ; 0.832 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 958 ; 7.294 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 384 ;34.745 ;22.005 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1322 ;19.401 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 94 ;19.565 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1175 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8879 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1889 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5XBS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1300003255. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28181 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.8 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CACODYLATE (PH 6.5), 0.2 REMARK 280 M MAGNESIUM ACETATE, AND 20% PEG8000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 85.39400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 248 REMARK 465 LEU A 249 REMARK 465 HIS A 250 REMARK 465 MET B 1 REMARK 465 GLU B 119 REMARK 465 SER B 120 REMARK 465 GLU B 244 REMARK 465 ALA B 245 REMARK 465 ARG B 246 REMARK 465 THR B 247 REMARK 465 HIS B 248 REMARK 465 LEU B 249 REMARK 465 HIS B 250 REMARK 465 MET C 1 REMARK 465 PRO C 2 REMARK 465 GLY C 3 REMARK 465 GLU C 119 REMARK 465 SER C 120 REMARK 465 THR C 247 REMARK 465 HIS C 248 REMARK 465 LEU C 249 REMARK 465 HIS C 250 REMARK 465 MET D 1 REMARK 465 PRO D 2 REMARK 465 GLY D 3 REMARK 465 HIS D 117 REMARK 465 ALA D 118 REMARK 465 GLU D 119 REMARK 465 SER D 120 REMARK 465 GLU D 244 REMARK 465 ALA D 245 REMARK 465 ARG D 246 REMARK 465 THR D 247 REMARK 465 HIS D 248 REMARK 465 LEU D 249 REMARK 465 HIS D 250 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU C 153 OH TYR D 143 1.97 REMARK 500 OE1 GLU C 53 NH1 ARG C 126 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 60 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 149 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG C 149 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 104 62.72 -164.64 REMARK 500 GLN A 106 -64.64 75.46 REMARK 500 GLU A 119 -68.39 109.18 REMARK 500 SER A 120 -45.79 160.48 REMARK 500 THR A 122 37.43 -96.80 REMARK 500 ASN A 177 54.66 -114.54 REMARK 500 GLU A 201 37.99 -84.94 REMARK 500 SER A 202 -27.00 -145.03 REMARK 500 ALA A 245 -13.19 -173.95 REMARK 500 PRO B 13 106.63 -47.10 REMARK 500 VAL B 76 40.35 -93.57 REMARK 500 SER B 78 170.29 -59.12 REMARK 500 PRO B 105 170.08 -49.92 REMARK 500 GLN B 106 -20.77 65.36 REMARK 500 HIS B 117 -36.53 -145.97 REMARK 500 HIS B 123 -61.61 82.50 REMARK 500 THR B 124 -149.86 -89.48 REMARK 500 VAL B 125 21.24 85.07 REMARK 500 ARG B 126 55.32 -95.34 REMARK 500 ALA B 173 114.92 -33.86 REMARK 500 ASP B 174 2.47 81.27 REMARK 500 ASN B 177 41.67 -109.93 REMARK 500 MET C 15 142.68 -172.54 REMARK 500 ASP C 20 1.27 -63.60 REMARK 500 GLN C 106 -19.28 69.31 REMARK 500 ARG C 126 24.27 -154.77 REMARK 500 LEU C 147 117.32 -162.47 REMARK 500 LEU C 161 -39.34 -37.22 REMARK 500 LYS C 168 54.34 34.16 REMARK 500 ASP C 174 16.95 58.93 REMARK 500 ASP C 209 171.88 169.35 REMARK 500 ALA C 245 41.52 -77.93 REMARK 500 ALA D 44 157.51 164.62 REMARK 500 ARG D 66 -33.93 -34.92 REMARK 500 VAL D 76 48.97 -89.68 REMARK 500 GLN D 106 -12.48 81.48 REMARK 500 THR D 122 37.98 -92.47 REMARK 500 VAL D 125 72.79 -1.18 REMARK 500 ARG D 126 16.54 -146.64 REMARK 500 ASP D 132 -178.30 -61.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 118 GLU A 119 32.27 REMARK 500 THR B 122 HIS B 123 60.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5XBQ RELATED DB: PDB REMARK 900 RELATED ID: 5XBR RELATED DB: PDB DBREF 5XBS A 1 250 UNP Q9Y9L0 TDXH_AERPE 1 250 DBREF 5XBS B 1 250 UNP Q9Y9L0 TDXH_AERPE 1 250 DBREF 5XBS C 1 250 UNP Q9Y9L0 TDXH_AERPE 1 250 DBREF 5XBS D 1 250 UNP Q9Y9L0 TDXH_AERPE 1 250 SEQADV 5XBS ARG A 23 UNP Q9Y9L0 VAL 23 ENGINEERED MUTATION SEQADV 5XBS GLU A 80 UNP Q9Y9L0 PHE 80 ENGINEERED MUTATION SEQADV 5XBS ASP A 81 UNP Q9Y9L0 SER 81 ENGINEERED MUTATION SEQADV 5XBS SER A 83 UNP Q9Y9L0 ILE 83 ENGINEERED MUTATION SEQADV 5XBS ALA A 84 UNP Q9Y9L0 LYS 84 ENGINEERED MUTATION SEQADV 5XBS SER A 210 UNP Q9Y9L0 TRP 210 ENGINEERED MUTATION SEQADV 5XBS ARG B 23 UNP Q9Y9L0 VAL 23 ENGINEERED MUTATION SEQADV 5XBS GLU B 80 UNP Q9Y9L0 PHE 80 ENGINEERED MUTATION SEQADV 5XBS ASP B 81 UNP Q9Y9L0 SER 81 ENGINEERED MUTATION SEQADV 5XBS SER B 83 UNP Q9Y9L0 ILE 83 ENGINEERED MUTATION SEQADV 5XBS ALA B 84 UNP Q9Y9L0 LYS 84 ENGINEERED MUTATION SEQADV 5XBS SER B 210 UNP Q9Y9L0 TRP 210 ENGINEERED MUTATION SEQADV 5XBS ARG C 23 UNP Q9Y9L0 VAL 23 ENGINEERED MUTATION SEQADV 5XBS GLU C 80 UNP Q9Y9L0 PHE 80 ENGINEERED MUTATION SEQADV 5XBS ASP C 81 UNP Q9Y9L0 SER 81 ENGINEERED MUTATION SEQADV 5XBS SER C 83 UNP Q9Y9L0 ILE 83 ENGINEERED MUTATION SEQADV 5XBS ALA C 84 UNP Q9Y9L0 LYS 84 ENGINEERED MUTATION SEQADV 5XBS SER C 210 UNP Q9Y9L0 TRP 210 ENGINEERED MUTATION SEQADV 5XBS ARG D 23 UNP Q9Y9L0 VAL 23 ENGINEERED MUTATION SEQADV 5XBS GLU D 80 UNP Q9Y9L0 PHE 80 ENGINEERED MUTATION SEQADV 5XBS ASP D 81 UNP Q9Y9L0 SER 81 ENGINEERED MUTATION SEQADV 5XBS SER D 83 UNP Q9Y9L0 ILE 83 ENGINEERED MUTATION SEQADV 5XBS ALA D 84 UNP Q9Y9L0 LYS 84 ENGINEERED MUTATION SEQADV 5XBS SER D 210 UNP Q9Y9L0 TRP 210 ENGINEERED MUTATION SEQRES 1 A 250 MET PRO GLY SER ILE PRO LEU ILE GLY GLU ARG PHE PRO SEQRES 2 A 250 GLU MET GLU VAL THR THR ASP HIS GLY ARG ILE LYS LEU SEQRES 3 A 250 PRO ASP HIS TYR VAL SER GLN GLY LYS TRP PHE VAL LEU SEQRES 4 A 250 PHE SER HIS PRO ALA ASP PHE THR PRO VAL CYS THR THR SEQRES 5 A 250 GLU PHE VAL SER PHE ALA ARG ARG TYR GLU ASP PHE GLN SEQRES 6 A 250 ARG LEU GLY VAL ASP LEU ILE GLY LEU SER VAL ASP SER SEQRES 7 A 250 VAL GLU ASP HIS SER ALA TRP LYS GLU TRP ILE GLU ARG SEQRES 8 A 250 HIS ILE GLY VAL ARG ILE PRO PHE PRO ILE ILE ALA ASP SEQRES 9 A 250 PRO GLN GLY THR VAL ALA ARG ARG LEU GLY LEU LEU HIS SEQRES 10 A 250 ALA GLU SER ALA THR HIS THR VAL ARG GLY VAL PHE ILE SEQRES 11 A 250 VAL ASP ALA ARG GLY VAL ILE ARG THR MET LEU TYR TYR SEQRES 12 A 250 PRO MET GLU LEU GLY ARG LEU VAL ASP GLU ILE LEU ARG SEQRES 13 A 250 ILE VAL LYS ALA LEU LYS LEU GLY ASP SER LEU LYS ARG SEQRES 14 A 250 ALA VAL PRO ALA ASP TRP PRO ASN ASN GLU ILE ILE GLY SEQRES 15 A 250 GLU GLY LEU ILE VAL PRO PRO PRO THR THR GLU ASP GLN SEQRES 16 A 250 ALA ARG ALA ARG MET GLU SER GLY GLN TYR ARG CYS LEU SEQRES 17 A 250 ASP SER TRP PHE CYS TRP ASP THR PRO ALA SER ARG ASP SEQRES 18 A 250 ASP VAL GLU GLU ALA ARG ARG TYR LEU ARG ARG ALA ALA SEQRES 19 A 250 GLU LYS PRO ALA LYS LEU LEU TYR GLU GLU ALA ARG THR SEQRES 20 A 250 HIS LEU HIS SEQRES 1 B 250 MET PRO GLY SER ILE PRO LEU ILE GLY GLU ARG PHE PRO SEQRES 2 B 250 GLU MET GLU VAL THR THR ASP HIS GLY ARG ILE LYS LEU SEQRES 3 B 250 PRO ASP HIS TYR VAL SER GLN GLY LYS TRP PHE VAL LEU SEQRES 4 B 250 PHE SER HIS PRO ALA ASP PHE THR PRO VAL CYS THR THR SEQRES 5 B 250 GLU PHE VAL SER PHE ALA ARG ARG TYR GLU ASP PHE GLN SEQRES 6 B 250 ARG LEU GLY VAL ASP LEU ILE GLY LEU SER VAL ASP SER SEQRES 7 B 250 VAL GLU ASP HIS SER ALA TRP LYS GLU TRP ILE GLU ARG SEQRES 8 B 250 HIS ILE GLY VAL ARG ILE PRO PHE PRO ILE ILE ALA ASP SEQRES 9 B 250 PRO GLN GLY THR VAL ALA ARG ARG LEU GLY LEU LEU HIS SEQRES 10 B 250 ALA GLU SER ALA THR HIS THR VAL ARG GLY VAL PHE ILE SEQRES 11 B 250 VAL ASP ALA ARG GLY VAL ILE ARG THR MET LEU TYR TYR SEQRES 12 B 250 PRO MET GLU LEU GLY ARG LEU VAL ASP GLU ILE LEU ARG SEQRES 13 B 250 ILE VAL LYS ALA LEU LYS LEU GLY ASP SER LEU LYS ARG SEQRES 14 B 250 ALA VAL PRO ALA ASP TRP PRO ASN ASN GLU ILE ILE GLY SEQRES 15 B 250 GLU GLY LEU ILE VAL PRO PRO PRO THR THR GLU ASP GLN SEQRES 16 B 250 ALA ARG ALA ARG MET GLU SER GLY GLN TYR ARG CYS LEU SEQRES 17 B 250 ASP SER TRP PHE CYS TRP ASP THR PRO ALA SER ARG ASP SEQRES 18 B 250 ASP VAL GLU GLU ALA ARG ARG TYR LEU ARG ARG ALA ALA SEQRES 19 B 250 GLU LYS PRO ALA LYS LEU LEU TYR GLU GLU ALA ARG THR SEQRES 20 B 250 HIS LEU HIS SEQRES 1 C 250 MET PRO GLY SER ILE PRO LEU ILE GLY GLU ARG PHE PRO SEQRES 2 C 250 GLU MET GLU VAL THR THR ASP HIS GLY ARG ILE LYS LEU SEQRES 3 C 250 PRO ASP HIS TYR VAL SER GLN GLY LYS TRP PHE VAL LEU SEQRES 4 C 250 PHE SER HIS PRO ALA ASP PHE THR PRO VAL CYS THR THR SEQRES 5 C 250 GLU PHE VAL SER PHE ALA ARG ARG TYR GLU ASP PHE GLN SEQRES 6 C 250 ARG LEU GLY VAL ASP LEU ILE GLY LEU SER VAL ASP SER SEQRES 7 C 250 VAL GLU ASP HIS SER ALA TRP LYS GLU TRP ILE GLU ARG SEQRES 8 C 250 HIS ILE GLY VAL ARG ILE PRO PHE PRO ILE ILE ALA ASP SEQRES 9 C 250 PRO GLN GLY THR VAL ALA ARG ARG LEU GLY LEU LEU HIS SEQRES 10 C 250 ALA GLU SER ALA THR HIS THR VAL ARG GLY VAL PHE ILE SEQRES 11 C 250 VAL ASP ALA ARG GLY VAL ILE ARG THR MET LEU TYR TYR SEQRES 12 C 250 PRO MET GLU LEU GLY ARG LEU VAL ASP GLU ILE LEU ARG SEQRES 13 C 250 ILE VAL LYS ALA LEU LYS LEU GLY ASP SER LEU LYS ARG SEQRES 14 C 250 ALA VAL PRO ALA ASP TRP PRO ASN ASN GLU ILE ILE GLY SEQRES 15 C 250 GLU GLY LEU ILE VAL PRO PRO PRO THR THR GLU ASP GLN SEQRES 16 C 250 ALA ARG ALA ARG MET GLU SER GLY GLN TYR ARG CYS LEU SEQRES 17 C 250 ASP SER TRP PHE CYS TRP ASP THR PRO ALA SER ARG ASP SEQRES 18 C 250 ASP VAL GLU GLU ALA ARG ARG TYR LEU ARG ARG ALA ALA SEQRES 19 C 250 GLU LYS PRO ALA LYS LEU LEU TYR GLU GLU ALA ARG THR SEQRES 20 C 250 HIS LEU HIS SEQRES 1 D 250 MET PRO GLY SER ILE PRO LEU ILE GLY GLU ARG PHE PRO SEQRES 2 D 250 GLU MET GLU VAL THR THR ASP HIS GLY ARG ILE LYS LEU SEQRES 3 D 250 PRO ASP HIS TYR VAL SER GLN GLY LYS TRP PHE VAL LEU SEQRES 4 D 250 PHE SER HIS PRO ALA ASP PHE THR PRO VAL CYS THR THR SEQRES 5 D 250 GLU PHE VAL SER PHE ALA ARG ARG TYR GLU ASP PHE GLN SEQRES 6 D 250 ARG LEU GLY VAL ASP LEU ILE GLY LEU SER VAL ASP SER SEQRES 7 D 250 VAL GLU ASP HIS SER ALA TRP LYS GLU TRP ILE GLU ARG SEQRES 8 D 250 HIS ILE GLY VAL ARG ILE PRO PHE PRO ILE ILE ALA ASP SEQRES 9 D 250 PRO GLN GLY THR VAL ALA ARG ARG LEU GLY LEU LEU HIS SEQRES 10 D 250 ALA GLU SER ALA THR HIS THR VAL ARG GLY VAL PHE ILE SEQRES 11 D 250 VAL ASP ALA ARG GLY VAL ILE ARG THR MET LEU TYR TYR SEQRES 12 D 250 PRO MET GLU LEU GLY ARG LEU VAL ASP GLU ILE LEU ARG SEQRES 13 D 250 ILE VAL LYS ALA LEU LYS LEU GLY ASP SER LEU LYS ARG SEQRES 14 D 250 ALA VAL PRO ALA ASP TRP PRO ASN ASN GLU ILE ILE GLY SEQRES 15 D 250 GLU GLY LEU ILE VAL PRO PRO PRO THR THR GLU ASP GLN SEQRES 16 D 250 ALA ARG ALA ARG MET GLU SER GLY GLN TYR ARG CYS LEU SEQRES 17 D 250 ASP SER TRP PHE CYS TRP ASP THR PRO ALA SER ARG ASP SEQRES 18 D 250 ASP VAL GLU GLU ALA ARG ARG TYR LEU ARG ARG ALA ALA SEQRES 19 D 250 GLU LYS PRO ALA LYS LEU LEU TYR GLU GLU ALA ARG THR SEQRES 20 D 250 HIS LEU HIS FORMUL 5 HOH *4(H2 O) HELIX 1 AA1 PRO A 27 SER A 32 1 6 HELIX 2 AA2 THR A 47 ARG A 60 1 14 HELIX 3 AA3 ARG A 60 GLY A 68 1 9 HELIX 4 AA4 SER A 78 HIS A 92 1 15 HELIX 5 AA5 GLY A 107 LEU A 113 1 7 HELIX 6 AA6 LEU A 150 LYS A 168 1 19 HELIX 7 AA7 THR A 192 GLU A 201 1 10 HELIX 8 AA8 SER A 219 GLU A 235 1 17 HELIX 9 AA9 PRO B 27 GLN B 33 1 7 HELIX 10 AB1 THR B 47 ARG B 60 1 14 HELIX 11 AB2 ARG B 60 GLY B 68 1 9 HELIX 12 AB3 SER B 78 GLY B 94 1 17 HELIX 13 AB4 GLY B 107 LEU B 113 1 7 HELIX 14 AB5 LEU B 150 LYS B 168 1 19 HELIX 15 AB6 THR B 192 GLY B 203 1 12 HELIX 16 AB7 SER B 219 GLU B 235 1 17 HELIX 17 AB8 PRO C 27 SER C 32 1 6 HELIX 18 AB9 THR C 47 ARG C 60 1 14 HELIX 19 AC1 ARG C 60 LEU C 67 1 8 HELIX 20 AC2 SER C 78 GLY C 94 1 17 HELIX 21 AC3 GLY C 107 ARG C 112 1 6 HELIX 22 AC4 LEU C 150 LEU C 167 1 18 HELIX 23 AC5 THR C 192 GLY C 203 1 12 HELIX 24 AC6 SER C 219 GLU C 235 1 17 HELIX 25 AC7 LEU C 240 ALA C 245 1 6 HELIX 26 AC8 PRO D 27 SER D 32 1 6 HELIX 27 AC9 THR D 47 ARG D 60 1 14 HELIX 28 AD1 ARG D 60 LEU D 67 1 8 HELIX 29 AD2 SER D 78 GLY D 94 1 17 HELIX 30 AD3 GLY D 107 LEU D 113 1 7 HELIX 31 AD4 LEU D 150 LYS D 168 1 19 HELIX 32 AD5 THR D 192 SER D 202 1 11 HELIX 33 AD6 SER D 219 GLU D 235 1 17 SHEET 1 AA1 2 GLY A 3 ILE A 5 0 SHEET 2 AA1 2 GLY B 3 ILE B 5 -1 O ILE B 5 N GLY A 3 SHEET 1 AA2 2 MET A 15 THR A 19 0 SHEET 2 AA2 2 GLY A 22 LEU A 26 -1 O LEU A 26 N MET A 15 SHEET 1 AA312 ILE A 101 ALA A 103 0 SHEET 2 AA312 VAL A 69 SER A 75 1 N GLY A 73 O ILE A 102 SHEET 3 AA312 TRP A 36 HIS A 42 1 N TRP A 36 O ASP A 70 SHEET 4 AA312 GLY A 127 VAL A 131 -1 O VAL A 131 N PHE A 37 SHEET 5 AA312 ILE A 137 TYR A 142 -1 O ARG A 138 N ILE A 130 SHEET 6 AA312 ILE B 137 TYR B 142 -1 O MET B 140 N TYR A 142 SHEET 7 AA312 GLY B 127 VAL B 131 -1 N ILE B 130 O ARG B 138 SHEET 8 AA312 TRP B 36 HIS B 42 -1 N LEU B 39 O PHE B 129 SHEET 9 AA312 VAL B 69 SER B 75 1 O LEU B 74 N HIS B 42 SHEET 10 AA312 ILE B 101 ALA B 103 1 O ILE B 102 N GLY B 73 SHEET 11 AA312 MET B 15 THR B 19 -1 N THR B 18 O ALA B 103 SHEET 12 AA312 GLY B 22 LEU B 26 -1 O LEU B 26 N MET B 15 SHEET 1 AA4 3 LEU A 185 ILE A 186 0 SHEET 2 AA4 3 PHE A 212 ASP A 215 -1 O ASP A 215 N LEU A 185 SHEET 3 AA4 3 ARG A 206 ASP A 209 -1 N ARG A 206 O TRP A 214 SHEET 1 AA5 3 LEU B 185 ILE B 186 0 SHEET 2 AA5 3 PHE B 212 ASP B 215 -1 O ASP B 215 N LEU B 185 SHEET 3 AA5 3 ARG B 206 ASP B 209 -1 N LEU B 208 O PHE B 212 SHEET 1 AA6 2 MET C 15 THR C 19 0 SHEET 2 AA6 2 GLY C 22 LEU C 26 -1 O LEU C 26 N MET C 15 SHEET 1 AA710 ILE C 101 ALA C 103 0 SHEET 2 AA710 VAL C 69 SER C 75 1 N GLY C 73 O ILE C 102 SHEET 3 AA710 TRP C 36 HIS C 42 1 N TRP C 36 O ASP C 70 SHEET 4 AA710 GLY C 127 VAL C 131 -1 O VAL C 131 N PHE C 37 SHEET 5 AA710 ILE C 137 TYR C 142 -1 O ARG C 138 N ILE C 130 SHEET 6 AA710 ILE D 137 TYR D 142 -1 O TYR D 142 N MET C 140 SHEET 7 AA710 GLY D 127 VAL D 131 -1 N ILE D 130 O THR D 139 SHEET 8 AA710 TRP D 36 HIS D 42 -1 N LEU D 39 O PHE D 129 SHEET 9 AA710 VAL D 69 SER D 75 1 O ASP D 70 N TRP D 36 SHEET 10 AA710 ILE D 101 ALA D 103 1 O ILE D 102 N GLY D 73 SHEET 1 AA8 3 LEU C 185 ILE C 186 0 SHEET 2 AA8 3 CYS C 213 ASP C 215 -1 O ASP C 215 N LEU C 185 SHEET 3 AA8 3 ARG C 206 CYS C 207 -1 N ARG C 206 O TRP C 214 SHEET 1 AA9 2 MET D 15 THR D 19 0 SHEET 2 AA9 2 GLY D 22 LEU D 26 -1 O ILE D 24 N VAL D 17 SHEET 1 AB1 3 LEU D 185 ILE D 186 0 SHEET 2 AB1 3 PHE D 212 ASP D 215 -1 O ASP D 215 N LEU D 185 SHEET 3 AB1 3 ARG D 206 ASP D 209 -1 N LEU D 208 O PHE D 212 SSBOND 1 CYS A 207 CYS A 213 1555 1555 2.02 SSBOND 2 CYS B 207 CYS B 213 1555 1555 2.06 SSBOND 3 CYS C 207 CYS C 213 1555 1555 2.07 SSBOND 4 CYS D 207 CYS D 213 1555 1555 2.06 CISPEP 1 LEU A 26 PRO A 27 0 -0.74 CISPEP 2 TRP A 175 PRO A 176 0 3.91 CISPEP 3 LEU B 26 PRO B 27 0 -4.22 CISPEP 4 TRP B 175 PRO B 176 0 9.86 CISPEP 5 LEU C 26 PRO C 27 0 5.08 CISPEP 6 TRP C 175 PRO C 176 0 9.84 CISPEP 7 LEU D 26 PRO D 27 0 -3.92 CISPEP 8 TRP D 175 PRO D 176 0 -1.26 CRYST1 51.656 170.788 61.972 90.00 114.00 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019359 0.000000 0.008619 0.00000 SCALE2 0.000000 0.005855 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017663 0.00000