HEADER SIGNALING PROTEIN, PROTEIN BINDING 21-MAR-17 5XBY TITLE CRYSTAL STRUCTURE OF THE PKA-PROTEIN A FUSION PROTEIN (END-TO-END TITLE 2 FUSION) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE TYPE II-ALPHA REGULATORY COMPND 3 SUBUNIT,IMMUNOGLOBULIN G-BINDING PROTEIN A; COMPND 4 CHAIN: A, B, C, D; COMPND 5 FRAGMENT: UNP RESIDUES 5-44,UNP RESIDUES 217-269; COMPND 6 SYNONYM: IGG-BINDING PROTEIN A,STAPHYLOCOCCAL PROTEIN A; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: THE FUSION PROTEIN OF 4 TAGS, PKA (UNP RESIDUES 5-44) COMPND 10 AND PROTEIN A (UNP RESIDUES 217-269) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606, 1280; SOURCE 5 GENE: PRKAR2A, PKR2, PRKAR2, SPA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SYNTHETIC PROTEIN, KINASE, LYASE, SIGNALING PROTEIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.J.YOUN,N.Y.KWON,J.H.LEE,J.H.KIM,H.LEE,J.O.LEE REVDAT 2 22-NOV-23 5XBY 1 REMARK REVDAT 1 05-JUL-17 5XBY 0 JRNL AUTH S.J.YOUN,N.Y.KWON,J.H.LEE,J.H.KIM,J.CHOI,H.LEE,J.O.LEE JRNL TITL CONSTRUCTION OF NOVEL REPEAT PROTEINS WITH RIGID AND JRNL TITL 2 PREDICTABLE STRUCTURES USING A SHARED HELIX METHOD. JRNL REF SCI REP V. 7 2595 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28572639 JRNL DOI 10.1038/S41598-017-02803-Z REMARK 2 REMARK 2 RESOLUTION. 3.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 10339 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.254 REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.307 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 541 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 605 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3800 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.4100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2553 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 165.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.46000 REMARK 3 B22 (A**2) : -11.10000 REMARK 3 B33 (A**2) : 7.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.509 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.533 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 75.516 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.871 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2604 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3538 ; 1.729 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 309 ; 4.965 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 149 ;37.184 ;25.570 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 447 ;18.308 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;24.829 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 388 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2042 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1248 ; 9.862 ; 7.584 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1553 ;13.676 ;11.350 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1351 ;13.055 ; 7.725 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 10357 ;18.646 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2599 ; 3.020 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2553 ;39.619 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 5 41 B 5 41 2162 0.16 0.05 REMARK 3 2 A 5 41 C 5 41 2322 0.13 0.05 REMARK 3 3 A 5 41 D 5 41 2194 0.15 0.05 REMARK 3 4 B 5 93 C 5 93 5290 0.17 0.05 REMARK 3 5 B 3 93 D 3 93 5676 0.12 0.05 REMARK 3 6 C 5 93 D 5 93 5244 0.17 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 23 REMARK 3 RESIDUE RANGE : A 24 A 42 REMARK 3 ORIGIN FOR THE GROUP (A): -74.2433 182.3951 6.1327 REMARK 3 T TENSOR REMARK 3 T11: 0.3121 T22: 0.3121 REMARK 3 T33: 0.1326 T12: -0.0601 REMARK 3 T13: 0.0574 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 15.2426 L22: 7.9566 REMARK 3 L33: 3.3863 L12: -2.7511 REMARK 3 L13: 2.3090 L23: -0.0471 REMARK 3 S TENSOR REMARK 3 S11: 0.4026 S12: 0.6275 S13: 0.9992 REMARK 3 S21: -0.3539 S22: -0.3185 S23: -0.7890 REMARK 3 S31: -0.2182 S32: 0.4602 S33: -0.0841 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 27 REMARK 3 RESIDUE RANGE : B 28 B 56 REMARK 3 RESIDUE RANGE : B 57 B 94 REMARK 3 ORIGIN FOR THE GROUP (A): -88.0638 168.4370 11.6855 REMARK 3 T TENSOR REMARK 3 T11: 0.5158 T22: 0.8587 REMARK 3 T33: 0.5372 T12: 0.1691 REMARK 3 T13: 0.0731 T23: 0.1339 REMARK 3 L TENSOR REMARK 3 L11: 3.8952 L22: 10.8447 REMARK 3 L33: 3.3859 L12: 5.1229 REMARK 3 L13: -1.9339 L23: -0.6456 REMARK 3 S TENSOR REMARK 3 S11: -0.0085 S12: -0.3880 S13: 0.2657 REMARK 3 S21: 0.5250 S22: -0.3021 S23: 1.7371 REMARK 3 S31: 0.3027 S32: -0.7691 S33: 0.3106 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 5 C 56 REMARK 3 RESIDUE RANGE : C 57 C 94 REMARK 3 ORIGIN FOR THE GROUP (A): -67.4827 205.7928 -9.9174 REMARK 3 T TENSOR REMARK 3 T11: 1.2300 T22: 1.0745 REMARK 3 T33: 1.0676 T12: -0.0864 REMARK 3 T13: 0.0922 T23: -0.1254 REMARK 3 L TENSOR REMARK 3 L11: 2.0695 L22: 0.8202 REMARK 3 L33: 0.1961 L12: 0.4009 REMARK 3 L13: 0.5999 L23: 0.0589 REMARK 3 S TENSOR REMARK 3 S11: -0.3317 S12: 0.8968 S13: 0.4195 REMARK 3 S21: -0.2057 S22: 0.2149 S23: -0.6321 REMARK 3 S31: -0.0704 S32: 0.3616 S33: 0.1168 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 3 D 27 REMARK 3 RESIDUE RANGE : D 28 D 94 REMARK 3 ORIGIN FOR THE GROUP (A): -95.4281 207.0349 8.6409 REMARK 3 T TENSOR REMARK 3 T11: 1.6240 T22: 1.1194 REMARK 3 T33: 1.2831 T12: 0.2135 REMARK 3 T13: 0.1316 T23: 0.0224 REMARK 3 L TENSOR REMARK 3 L11: 7.5923 L22: 3.3415 REMARK 3 L33: 0.9849 L12: -4.5248 REMARK 3 L13: -2.3787 L23: 1.8052 REMARK 3 S TENSOR REMARK 3 S11: -0.2058 S12: -0.9684 S13: 0.4845 REMARK 3 S21: 0.0530 S22: 0.0499 S23: 0.3673 REMARK 3 S31: -0.0202 S32: -0.0590 S33: 0.1559 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XBY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1300003251. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10889 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2IZX, 4ZNC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS PH 8.5, 2.16M SODIUM REMARK 280 FORMATE, VAPOR DIFFUSION, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.80550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.80550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.99400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 87.07350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.99400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 87.07350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.80550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.99400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 87.07350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.80550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.99400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 87.07350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 PRO A 2 REMARK 465 TRP A 3 REMARK 465 GLN A 4 REMARK 465 ARG A 43 REMARK 465 ASN A 44 REMARK 465 LYS A 45 REMARK 465 GLU A 46 REMARK 465 GLN A 47 REMARK 465 GLN A 48 REMARK 465 ASN A 49 REMARK 465 ALA A 50 REMARK 465 PHE A 51 REMARK 465 TYR A 52 REMARK 465 GLU A 53 REMARK 465 ILE A 54 REMARK 465 LEU A 55 REMARK 465 HIS A 56 REMARK 465 LEU A 57 REMARK 465 PRO A 58 REMARK 465 ASN A 59 REMARK 465 LEU A 60 REMARK 465 ASN A 61 REMARK 465 GLU A 62 REMARK 465 GLU A 63 REMARK 465 GLN A 64 REMARK 465 ARG A 65 REMARK 465 ASN A 66 REMARK 465 ALA A 67 REMARK 465 PHE A 68 REMARK 465 ILE A 69 REMARK 465 GLN A 70 REMARK 465 SER A 71 REMARK 465 LEU A 72 REMARK 465 LYS A 73 REMARK 465 ASP A 74 REMARK 465 ASP A 75 REMARK 465 PRO A 76 REMARK 465 SER A 77 REMARK 465 GLN A 78 REMARK 465 SER A 79 REMARK 465 ALA A 80 REMARK 465 ASN A 81 REMARK 465 LEU A 82 REMARK 465 LEU A 83 REMARK 465 ALA A 84 REMARK 465 GLU A 85 REMARK 465 ALA A 86 REMARK 465 LYS A 87 REMARK 465 LYS A 88 REMARK 465 LEU A 89 REMARK 465 ASN A 90 REMARK 465 ASP A 91 REMARK 465 ALA A 92 REMARK 465 GLN A 93 REMARK 465 ALA A 94 REMARK 465 PRO A 95 REMARK 465 LYS A 96 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 PRO B 95 REMARK 465 LYS B 96 REMARK 465 GLY C 0 REMARK 465 SER C 1 REMARK 465 PRO C 2 REMARK 465 TRP C 3 REMARK 465 GLN C 4 REMARK 465 PRO C 95 REMARK 465 LYS C 96 REMARK 465 GLY D 0 REMARK 465 SER D 1 REMARK 465 PRO D 2 REMARK 465 PRO D 95 REMARK 465 LYS D 96 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN D 47 CB PRO D 76 1.71 REMARK 500 NE2 GLN B 47 CB PRO B 76 1.71 REMARK 500 NE2 GLN B 47 CA PRO B 76 1.75 REMARK 500 NE2 GLN D 47 CA PRO D 76 1.75 REMARK 500 OD1 ASP C 75 OG SER C 77 2.05 REMARK 500 O TYR B 52 N LEU B 55 2.14 REMARK 500 O TYR D 52 N LEU D 55 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG GLN C 48 CE2 TYR D 52 8575 1.81 REMARK 500 O GLN C 48 OH TYR D 52 8575 2.09 REMARK 500 CZ ARG B 22 NH1 ARG B 22 3355 2.15 REMARK 500 CB GLN C 48 CE2 TYR D 52 8575 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 30 CD GLU A 30 OE1 0.081 REMARK 500 GLU A 30 CD GLU A 30 OE2 0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 34 OE1 - CD - OE2 ANGL. DEV. = 8.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 78 40.40 -99.59 REMARK 500 GLN D 78 56.86 -109.74 REMARK 500 REMARK 500 REMARK: NULL DBREF 5XBY A 4 43 UNP P13861 KAP2_HUMAN 5 44 DBREF 5XBY A 44 96 UNP P38507 SPA_STAAU 217 269 DBREF 5XBY B 4 43 UNP P13861 KAP2_HUMAN 5 44 DBREF 5XBY B 44 96 UNP P38507 SPA_STAAU 217 269 DBREF 5XBY C 4 43 UNP P13861 KAP2_HUMAN 5 44 DBREF 5XBY C 44 96 UNP P38507 SPA_STAAU 217 269 DBREF 5XBY D 4 43 UNP P13861 KAP2_HUMAN 5 44 DBREF 5XBY D 44 96 UNP P38507 SPA_STAAU 217 269 SEQADV 5XBY GLY A 0 UNP P13861 EXPRESSION TAG SEQADV 5XBY SER A 1 UNP P13861 EXPRESSION TAG SEQADV 5XBY PRO A 2 UNP P13861 EXPRESSION TAG SEQADV 5XBY TRP A 3 UNP P13861 EXPRESSION TAG SEQADV 5XBY ALA A 67 UNP P38507 GLY 240 ENGINEERED MUTATION SEQADV 5XBY GLY B 0 UNP P13861 EXPRESSION TAG SEQADV 5XBY SER B 1 UNP P13861 EXPRESSION TAG SEQADV 5XBY PRO B 2 UNP P13861 EXPRESSION TAG SEQADV 5XBY TRP B 3 UNP P13861 EXPRESSION TAG SEQADV 5XBY ALA B 67 UNP P38507 GLY 240 ENGINEERED MUTATION SEQADV 5XBY GLY C 0 UNP P13861 EXPRESSION TAG SEQADV 5XBY SER C 1 UNP P13861 EXPRESSION TAG SEQADV 5XBY PRO C 2 UNP P13861 EXPRESSION TAG SEQADV 5XBY TRP C 3 UNP P13861 EXPRESSION TAG SEQADV 5XBY ALA C 67 UNP P38507 GLY 240 ENGINEERED MUTATION SEQADV 5XBY GLY D 0 UNP P13861 EXPRESSION TAG SEQADV 5XBY SER D 1 UNP P13861 EXPRESSION TAG SEQADV 5XBY PRO D 2 UNP P13861 EXPRESSION TAG SEQADV 5XBY TRP D 3 UNP P13861 EXPRESSION TAG SEQADV 5XBY ALA D 67 UNP P38507 GLY 240 ENGINEERED MUTATION SEQRES 1 A 97 GLY SER PRO TRP GLN ILE PRO PRO GLY LEU THR GLU LEU SEQRES 2 A 97 LEU GLN GLY TYR THR VAL GLU VAL LEU ARG GLN GLN PRO SEQRES 3 A 97 PRO ASP LEU VAL GLU PHE ALA VAL GLU TYR PHE THR ARG SEQRES 4 A 97 LEU ARG GLU ALA ARG ASN LYS GLU GLN GLN ASN ALA PHE SEQRES 5 A 97 TYR GLU ILE LEU HIS LEU PRO ASN LEU ASN GLU GLU GLN SEQRES 6 A 97 ARG ASN ALA PHE ILE GLN SER LEU LYS ASP ASP PRO SER SEQRES 7 A 97 GLN SER ALA ASN LEU LEU ALA GLU ALA LYS LYS LEU ASN SEQRES 8 A 97 ASP ALA GLN ALA PRO LYS SEQRES 1 B 97 GLY SER PRO TRP GLN ILE PRO PRO GLY LEU THR GLU LEU SEQRES 2 B 97 LEU GLN GLY TYR THR VAL GLU VAL LEU ARG GLN GLN PRO SEQRES 3 B 97 PRO ASP LEU VAL GLU PHE ALA VAL GLU TYR PHE THR ARG SEQRES 4 B 97 LEU ARG GLU ALA ARG ASN LYS GLU GLN GLN ASN ALA PHE SEQRES 5 B 97 TYR GLU ILE LEU HIS LEU PRO ASN LEU ASN GLU GLU GLN SEQRES 6 B 97 ARG ASN ALA PHE ILE GLN SER LEU LYS ASP ASP PRO SER SEQRES 7 B 97 GLN SER ALA ASN LEU LEU ALA GLU ALA LYS LYS LEU ASN SEQRES 8 B 97 ASP ALA GLN ALA PRO LYS SEQRES 1 C 97 GLY SER PRO TRP GLN ILE PRO PRO GLY LEU THR GLU LEU SEQRES 2 C 97 LEU GLN GLY TYR THR VAL GLU VAL LEU ARG GLN GLN PRO SEQRES 3 C 97 PRO ASP LEU VAL GLU PHE ALA VAL GLU TYR PHE THR ARG SEQRES 4 C 97 LEU ARG GLU ALA ARG ASN LYS GLU GLN GLN ASN ALA PHE SEQRES 5 C 97 TYR GLU ILE LEU HIS LEU PRO ASN LEU ASN GLU GLU GLN SEQRES 6 C 97 ARG ASN ALA PHE ILE GLN SER LEU LYS ASP ASP PRO SER SEQRES 7 C 97 GLN SER ALA ASN LEU LEU ALA GLU ALA LYS LYS LEU ASN SEQRES 8 C 97 ASP ALA GLN ALA PRO LYS SEQRES 1 D 97 GLY SER PRO TRP GLN ILE PRO PRO GLY LEU THR GLU LEU SEQRES 2 D 97 LEU GLN GLY TYR THR VAL GLU VAL LEU ARG GLN GLN PRO SEQRES 3 D 97 PRO ASP LEU VAL GLU PHE ALA VAL GLU TYR PHE THR ARG SEQRES 4 D 97 LEU ARG GLU ALA ARG ASN LYS GLU GLN GLN ASN ALA PHE SEQRES 5 D 97 TYR GLU ILE LEU HIS LEU PRO ASN LEU ASN GLU GLU GLN SEQRES 6 D 97 ARG ASN ALA PHE ILE GLN SER LEU LYS ASP ASP PRO SER SEQRES 7 D 97 GLN SER ALA ASN LEU LEU ALA GLU ALA LYS LYS LEU ASN SEQRES 8 D 97 ASP ALA GLN ALA PRO LYS HELIX 1 AA1 GLY A 8 GLN A 24 1 17 HELIX 2 AA2 ASP A 27 ALA A 42 1 16 HELIX 3 AA3 GLY B 8 GLN B 24 1 17 HELIX 4 AA4 ASP B 27 HIS B 56 1 30 HELIX 5 AA5 ASN B 61 ASP B 75 1 15 HELIX 6 AA6 GLN B 78 GLN B 93 1 16 HELIX 7 AA7 GLY C 8 GLN C 24 1 17 HELIX 8 AA8 ASP C 27 TYR C 52 1 26 HELIX 9 AA9 GLU C 53 LEU C 57 5 5 HELIX 10 AB1 ASN C 61 ASP C 75 1 15 HELIX 11 AB2 SER C 79 GLN C 93 1 15 HELIX 12 AB3 GLY D 8 GLN D 24 1 17 HELIX 13 AB4 ASP D 27 LEU D 57 1 31 HELIX 14 AB5 ASN D 61 ASP D 75 1 15 HELIX 15 AB6 GLN D 78 GLN D 93 1 16 CRYST1 75.988 174.147 103.611 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013160 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005742 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009651 0.00000