HEADER IMMUNE SYSTEM 23-MAR-17 5XCS TITLE CRYSTAL STRUCTURE OF 12CA5 FV-CLASP FRAGMENT WITH ITS ANTIGEN PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: VH-SARAH(Y35C) CHIMERA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: VL-SARAH(M24C) CHIMERA; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HA PEPTIDE; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 10090, 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 10090, 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_TAXID: 9606 KEYWDS ANTIBODY FRAGMENT, FV-CLASP, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR T.ARIMORI,J.TAKAGI REVDAT 3 22-NOV-23 5XCS 1 REMARK REVDAT 2 18-OCT-17 5XCS 1 JRNL REVDAT 1 04-OCT-17 5XCS 0 JRNL AUTH T.ARIMORI,Y.KITAGO,M.UMITSU,Y.FUJII,R.ASAKI, JRNL AUTH 2 K.TAMURA-KAWAKAMI,J.TAKAGI JRNL TITL FV-CLASP: AN ARTIFICIALLY DESIGNED SMALL ANTIBODY FRAGMENT JRNL TITL 2 WITH IMPROVED PRODUCTION COMPATIBILITY, STABILITY, AND JRNL TITL 3 CRYSTALLIZABILITY JRNL REF STRUCTURE V. 25 1611 2017 JRNL REFN ISSN 1878-4186 JRNL PMID 28919443 JRNL DOI 10.1016/J.STR.2017.08.011 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 23282 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1280 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1389 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.4080 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.3650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2684 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 89 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.81000 REMARK 3 B22 (A**2) : -3.80000 REMARK 3 B33 (A**2) : 2.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.226 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.191 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.160 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.626 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2761 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2493 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3733 ; 1.425 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5819 ; 0.923 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 334 ; 5.926 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;33.330 ;24.516 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 490 ;14.319 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.874 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 406 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3004 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 548 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1348 ; 0.912 ; 2.722 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1347 ; 0.912 ; 2.721 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1678 ; 1.530 ; 4.071 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1679 ; 1.530 ; 4.072 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1413 ; 1.141 ; 2.877 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1394 ; 1.116 ; 2.814 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2026 ; 1.863 ; 4.161 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2958 ; 4.101 ;30.473 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2945 ; 3.653 ;30.287 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 122 REMARK 3 ORIGIN FOR THE GROUP (A): -24.2490 -5.0470 11.8230 REMARK 3 T TENSOR REMARK 3 T11: 0.0675 T22: 0.1950 REMARK 3 T33: 0.1462 T12: -0.0377 REMARK 3 T13: -0.0650 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.4322 L22: 1.2211 REMARK 3 L33: 0.6344 L12: 1.1046 REMARK 3 L13: -0.0168 L23: 0.0416 REMARK 3 S TENSOR REMARK 3 S11: 0.1460 S12: -0.0844 S13: 0.0794 REMARK 3 S21: 0.0576 S22: -0.1643 S23: 0.0768 REMARK 3 S31: -0.0520 S32: 0.0491 S33: 0.0182 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 117 REMARK 3 ORIGIN FOR THE GROUP (A): -16.8490 -14.6070 -6.9770 REMARK 3 T TENSOR REMARK 3 T11: 0.0617 T22: 0.2002 REMARK 3 T33: 0.1487 T12: 0.0313 REMARK 3 T13: -0.0394 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.5247 L22: 0.8869 REMARK 3 L33: 1.3181 L12: 0.4579 REMARK 3 L13: -0.2965 L23: -0.6612 REMARK 3 S TENSOR REMARK 3 S11: -0.0001 S12: 0.0245 S13: -0.0595 REMARK 3 S21: -0.1516 S22: -0.0267 S23: -0.0656 REMARK 3 S31: 0.1320 S32: 0.1751 S33: 0.0268 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 123 A 161 REMARK 3 ORIGIN FOR THE GROUP (A): -7.608 17.201 -5.774 REMARK 3 T TENSOR REMARK 3 T11: 0.0302 T22: 0.2168 REMARK 3 T33: 0.1320 T12: 0.0092 REMARK 3 T13: -0.0495 T23: -0.0162 REMARK 3 L TENSOR REMARK 3 L11: 1.7592 L22: 0.7382 REMARK 3 L33: 8.0992 L12: 1.1081 REMARK 3 L13: 2.9404 L23: 1.5261 REMARK 3 S TENSOR REMARK 3 S11: -0.0585 S12: -0.1366 S13: 0.1608 REMARK 3 S21: -0.0526 S22: -0.1026 S23: 0.0880 REMARK 3 S31: 0.1323 S32: -0.2490 S33: 0.1611 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 122 B 159 REMARK 3 ORIGIN FOR THE GROUP (A): -14.479 12.181 -1.439 REMARK 3 T TENSOR REMARK 3 T11: 0.1000 T22: 0.2409 REMARK 3 T33: 0.1330 T12: -0.0337 REMARK 3 T13: -0.0659 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 2.7556 L22: 3.1498 REMARK 3 L33: 16.5836 L12: 2.8060 REMARK 3 L13: 6.6259 L23: 7.0532 REMARK 3 S TENSOR REMARK 3 S11: 0.1197 S12: -0.1840 S13: 0.1862 REMARK 3 S21: 0.0796 S22: -0.3285 S23: 0.1187 REMARK 3 S31: 0.3417 S32: -0.4651 S33: 0.2088 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5XCS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1300003299. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24599 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 42.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14000 REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.90000 REMARK 200 FOR SHELL : 3.410 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1HIL, 5XCQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA/K PHOSPHATE PH6.2, 1.4M REMARK 280 (NH4)2SO4, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.93500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.83000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.93500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.83000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -104.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 306 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLU A 162 REMARK 465 ALA A 163 REMARK 465 LYS A 164 REMARK 465 MET B 0 REMARK 465 GLY B 109 REMARK 465 SER B 110 REMARK 465 ASP B 111 REMARK 465 TYR B 112 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 66 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 147 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 147 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 142 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 43 0.12 85.41 REMARK 500 ALA B 51 -40.66 72.06 REMARK 500 ALA B 158 36.89 -72.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5XCQ RELATED DB: PDB REMARK 900 RELATED ID: 5XCR RELATED DB: PDB REMARK 900 RELATED ID: 5XCT RELATED DB: PDB REMARK 900 RELATED ID: 5XCU RELATED DB: PDB REMARK 900 RELATED ID: 5XCV RELATED DB: PDB REMARK 900 RELATED ID: 5XCX RELATED DB: PDB DBREF 5XCS A 2 122 PDB 5XCS 5XCS 2 122 DBREF 5XCS A 123 164 PDB 5XCS 5XCS 123 164 DBREF 5XCS B 3 115 PDB 5XCS 5XCS 3 115 DBREF 5XCS B 116 157 PDB 5XCS 5XCS 116 157 DBREF 5XCS C 1 9 PDB 5XCS 5XCS 1 9 SEQRES 1 A 172 MET GLU VAL LYS LEU VAL GLU SER GLY GLY ASP LEU VAL SEQRES 2 A 172 LYS PRO GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER SEQRES 3 A 172 GLY PHE THR PHE SER SER TYR GLY MET SER TRP VAL ARG SEQRES 4 A 172 GLN THR PRO ASP LYS ARG LEU GLU TRP VAL ALA THR ILE SEQRES 5 A 172 SER ARG GLY GLY SER TYR THR TYR TYR PRO ASP SER VAL SEQRES 6 A 172 LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN SEQRES 7 A 172 THR LEU TYR LEU GLN MET SER SER LEU LYS SER GLU ASP SEQRES 8 A 172 THR ALA MET TYR TYR CYS ALA ARG ARG GLU THR TYR ASP SEQRES 9 A 172 GLU LYS GLY PHE ALA TYR TRP GLY GLN GLY THR THR VAL SEQRES 10 A 172 THR VAL SER SER GLY SER ASP TYR GLU PHE LEU LYS SER SEQRES 11 A 172 TRP THR VAL GLU ASP LEU GLN LYS ARG LEU LEU ALA LEU SEQRES 12 A 172 ASP PRO MET MET GLU GLN GLU ILE GLU GLU ILE ARG GLN SEQRES 13 A 172 LYS CYS GLN SER LYS ARG GLN PRO ILE LEU ASP ALA ILE SEQRES 14 A 172 GLU ALA LYS SEQRES 1 B 166 MET ASP ILE GLU LEU THR GLN SER PRO SER SER LEU THR SEQRES 2 B 166 VAL THR ALA GLY GLU LYS VAL THR MET SER CYS LYS SER SEQRES 3 B 166 SER GLN SER LEU LEU ASN SER GLY ASN GLN LYS ASN TYR SEQRES 4 B 166 LEU THR TRP TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS SEQRES 5 B 166 LEU LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL SEQRES 6 B 166 PRO ASP ARG PHE THR GLY SER GLY SER GLY ARG ASP PHE SEQRES 7 B 166 THR LEU THR ILE SER SER VAL GLN ALA GLU ASP LEU ALA SEQRES 8 B 166 VAL TYR TYR CYS GLN ASN ASP ASN SER HIS PRO LEU THR SEQRES 9 B 166 PHE GLY ALA GLY THR LYS LEU GLU LEU LYS ALA GLY SER SEQRES 10 B 166 ASP TYR GLU PHE LEU LYS SER TRP THR VAL GLU ASP LEU SEQRES 11 B 166 GLN LYS ARG LEU LEU ALA LEU ASP PRO MET CYS GLU GLN SEQRES 12 B 166 GLU ILE GLU GLU ILE ARG GLN LYS TYR GLN SER LYS ARG SEQRES 13 B 166 GLN PRO ILE LEU ASP ALA ILE GLU ALA LYS SEQRES 1 C 9 TYR PRO TYR ASP VAL PRO ASP TYR ALA HET SO4 A 201 5 HET SO4 A 202 5 HET SO4 B 201 5 HET SO4 B 202 5 HET SO4 B 203 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 5(O4 S 2-) FORMUL 9 HOH *89(H2 O) HELIX 1 AA1 THR A 28 TYR A 32 5 5 HELIX 2 AA2 LYS A 83 THR A 87 5 5 HELIX 3 AA3 SER A 113 LEU A 120 1 8 HELIX 4 AA4 THR A 124 ALA A 134 1 11 HELIX 5 AA5 ALA A 134 ILE A 161 1 28 HELIX 6 AA6 GLN B 79 LEU B 83 5 5 HELIX 7 AA7 PHE B 114 TRP B 118 5 5 HELIX 8 AA8 THR B 119 ALA B 158 1 40 SHEET 1 AA1 4 LYS A 3 SER A 7 0 SHEET 2 AA1 4 LEU A 18 SER A 25 -1 O ALA A 23 N VAL A 5 SHEET 3 AA1 4 THR A 77 MET A 82 -1 O MET A 82 N LEU A 18 SHEET 4 AA1 4 PHE A 67 ASP A 72 -1 N SER A 70 O TYR A 79 SHEET 1 AA2 6 LEU A 11 VAL A 12 0 SHEET 2 AA2 6 THR A 107 VAL A 111 1 O THR A 110 N VAL A 12 SHEET 3 AA2 6 ALA A 88 ARG A 94 -1 N TYR A 90 O THR A 107 SHEET 4 AA2 6 MET A 34 GLN A 39 -1 N VAL A 37 O TYR A 91 SHEET 5 AA2 6 LEU A 45 ILE A 51 -1 O GLU A 46 N ARG A 38 SHEET 6 AA2 6 THR A 57 TYR A 58 -1 O TYR A 58 N THR A 50 SHEET 1 AA3 4 LEU B 4 SER B 7 0 SHEET 2 AA3 4 VAL B 19 SER B 25 -1 O LYS B 24 N THR B 5 SHEET 3 AA3 4 ASP B 70 ILE B 75 -1 O PHE B 71 N CYS B 23 SHEET 4 AA3 4 PHE B 62 SER B 67 -1 N THR B 63 O THR B 74 SHEET 1 AA4 6 SER B 10 VAL B 13 0 SHEET 2 AA4 6 THR B 102 LEU B 106 1 O GLU B 105 N VAL B 13 SHEET 3 AA4 6 VAL B 85 ASN B 90 -1 N TYR B 86 O THR B 102 SHEET 4 AA4 6 LEU B 33 GLN B 38 -1 N TYR B 36 O TYR B 87 SHEET 5 AA4 6 LYS B 45 TYR B 49 -1 O LEU B 47 N TRP B 35 SHEET 6 AA4 6 THR B 53 ARG B 54 -1 O THR B 53 N TYR B 49 SHEET 1 AA5 4 SER B 10 VAL B 13 0 SHEET 2 AA5 4 THR B 102 LEU B 106 1 O GLU B 105 N VAL B 13 SHEET 3 AA5 4 VAL B 85 ASN B 90 -1 N TYR B 86 O THR B 102 SHEET 4 AA5 4 THR B 97 PHE B 98 -1 O THR B 97 N ASN B 90 SSBOND 1 CYS A 22 CYS A 92 1555 1555 2.08 SSBOND 2 CYS A 150 CYS B 134 1555 1555 2.04 SSBOND 3 CYS B 23 CYS B 88 1555 1555 2.13 CISPEP 1 SER B 7 PRO B 8 0 -12.50 CISPEP 2 HIS B 94 PRO B 95 0 -7.20 SITE 1 AC1 6 SER A 7 GLY A 8 GLY A 9 THR A 107 SITE 2 AC1 6 HOH A 313 HOH A 314 SITE 1 AC2 7 LYS A 83 SER A 84 GLU A 85 SER A 113 SITE 2 AC2 7 GLY A 114 SER A 115 HOH A 311 SITE 1 AC3 3 LYS B 39 GLN B 42 HOH B 314 SITE 1 AC4 7 LYS A 153 LEU B 83 GLU B 105 LEU B 106 SITE 2 AC4 7 ARG B 126 MET B 133 HOH B 309 SITE 1 AC5 2 SER B 28 ARG B 69 CRYST1 93.870 85.660 76.540 90.00 125.71 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010653 0.000000 0.007658 0.00000 SCALE2 0.000000 0.011674 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016090 0.00000