HEADER IMMUNE SYSTEM 23-MAR-17 5XCU TITLE CRYSTAL STRUCTURE OF 12CA5 FV-CLASP FRAGMENT WITH ITS ANTIGEN PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: VH(S112C)-SARAH CHIMERA,VH(S112C)-SARAH CHIMERA; COMPND 3 CHAIN: A, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: VL-SARAH(S37C) CHIMERA,VL-SARAH(S37C) CHIMERA; COMPND 7 CHAIN: B, E; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HA PEPTIDE; COMPND 11 CHAIN: C, F; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 10090, 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 10090, 9606; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS ANTIBODY FRAGMENT, FV-CLASP, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR T.ARIMORI,J.TAKAGI REVDAT 3 22-NOV-23 5XCU 1 REMARK REVDAT 2 18-OCT-17 5XCU 1 JRNL REVDAT 1 04-OCT-17 5XCU 0 JRNL AUTH T.ARIMORI,Y.KITAGO,M.UMITSU,Y.FUJII,R.ASAKI, JRNL AUTH 2 K.TAMURA-KAWAKAMI,J.TAKAGI JRNL TITL FV-CLASP: AN ARTIFICIALLY DESIGNED SMALL ANTIBODY FRAGMENT JRNL TITL 2 WITH IMPROVED PRODUCTION COMPATIBILITY, STABILITY, AND JRNL TITL 3 CRYSTALLIZABILITY JRNL REF STRUCTURE V. 25 1611 2017 JRNL REFN ISSN 1878-4186 JRNL PMID 28919443 JRNL DOI 10.1016/J.STR.2017.08.011 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 29290 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1466 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5870 - 5.2839 0.99 2821 149 0.1694 0.2353 REMARK 3 2 5.2839 - 4.1950 0.99 2817 148 0.1401 0.1644 REMARK 3 3 4.1950 - 3.6650 0.99 2778 146 0.1706 0.1954 REMARK 3 4 3.6650 - 3.3300 0.99 2766 146 0.1909 0.2358 REMARK 3 5 3.3300 - 3.0914 1.00 2807 148 0.2309 0.2987 REMARK 3 6 3.0914 - 2.9092 1.00 2778 146 0.2410 0.3265 REMARK 3 7 2.9092 - 2.7635 0.97 2732 144 0.2597 0.2697 REMARK 3 8 2.7635 - 2.6432 0.99 2769 145 0.2703 0.3326 REMARK 3 9 2.6432 - 2.5415 0.99 2797 148 0.2596 0.3387 REMARK 3 10 2.5415 - 2.4538 0.99 2759 146 0.2675 0.3449 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5482 REMARK 3 ANGLE : 0.959 7412 REMARK 3 CHIRALITY : 0.050 800 REMARK 3 PLANARITY : 0.005 946 REMARK 3 DIHEDRAL : 7.933 3316 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 1:120)) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3785 19.5141 10.3630 REMARK 3 T TENSOR REMARK 3 T11: 0.1880 T22: 0.2032 REMARK 3 T33: 0.2132 T12: -0.0134 REMARK 3 T13: -0.0130 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.3454 L22: 1.7744 REMARK 3 L33: 0.8190 L12: -0.0395 REMARK 3 L13: -0.0129 L23: -0.6352 REMARK 3 S TENSOR REMARK 3 S11: 0.0763 S12: -0.1182 S13: -0.1117 REMARK 3 S21: -0.0364 S22: -0.1076 S23: 0.0752 REMARK 3 S31: 0.0396 S32: 0.0106 S33: 0.0539 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 121:164)) REMARK 3 ORIGIN FOR THE GROUP (A): 41.966 -3.663 17.286 REMARK 3 T TENSOR REMARK 3 T11: 0.3598 T22: 0.2449 REMARK 3 T33: 0.1770 T12: 0.0258 REMARK 3 T13: -0.0156 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 2.1351 L22: 2.7673 REMARK 3 L33: 0.6778 L12: 1.8388 REMARK 3 L13: -0.5227 L23: -0.1698 REMARK 3 S TENSOR REMARK 3 S11: 0.0308 S12: -0.0048 S13: -0.3908 REMARK 3 S21: 0.0256 S22: -0.0697 S23: -0.3384 REMARK 3 S31: 0.0593 S32: 0.0419 S33: 0.0459 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND ((RESSEQ 1:114)) REMARK 3 ORIGIN FOR THE GROUP (A): 37.5464 22.9057 -4.2399 REMARK 3 T TENSOR REMARK 3 T11: 0.2166 T22: 0.2109 REMARK 3 T33: 0.2743 T12: -0.0013 REMARK 3 T13: -0.0039 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 2.3113 L22: 1.2400 REMARK 3 L33: 0.9230 L12: -1.0310 REMARK 3 L13: -0.3852 L23: 0.3455 REMARK 3 S TENSOR REMARK 3 S11: -0.0696 S12: 0.0047 S13: 0.0012 REMARK 3 S21: -0.0626 S22: 0.0393 S23: -0.1693 REMARK 3 S31: 0.0201 S32: 0.0969 S33: 0.0233 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND ((RESSEQ 115:159)) REMARK 3 ORIGIN FOR THE GROUP (A): 38.874 5.684 17.327 REMARK 3 T TENSOR REMARK 3 T11: 0.3142 T22: 0.2145 REMARK 3 T33: 0.2299 T12: 0.0006 REMARK 3 T13: -0.0188 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 1.8540 L22: 1.8125 REMARK 3 L33: 0.4694 L12: 1.2249 REMARK 3 L13: -0.5739 L23: -0.2499 REMARK 3 S TENSOR REMARK 3 S11: 0.4027 S12: -0.2116 S13: 0.2276 REMARK 3 S21: 0.4031 S22: -0.2139 S23: 0.0902 REMARK 3 S31: -0.1839 S32: 0.0646 S33: -0.1284 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND ((RESSEQ 1:120)) REMARK 3 ORIGIN FOR THE GROUP (A): 46.5812 -1.9632 43.0862 REMARK 3 T TENSOR REMARK 3 T11: 0.2718 T22: 0.3901 REMARK 3 T33: 0.2623 T12: 0.0290 REMARK 3 T13: 0.0114 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 1.2198 L22: 1.1943 REMARK 3 L33: 2.4175 L12: -0.1248 REMARK 3 L13: 0.7888 L23: -0.6283 REMARK 3 S TENSOR REMARK 3 S11: -0.1004 S12: -0.1217 S13: -0.0346 REMARK 3 S21: 0.0719 S22: 0.0997 S23: -0.1080 REMARK 3 S31: 0.0326 S32: 0.3743 S33: -0.0485 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND ((RESSEQ 126:163)) REMARK 3 ORIGIN FOR THE GROUP (A): 30.318 -10.795 70.502 REMARK 3 T TENSOR REMARK 3 T11: 0.3720 T22: 0.3254 REMARK 3 T33: 0.2907 T12: -0.0144 REMARK 3 T13: 0.0465 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 3.9099 L22: 0.7519 REMARK 3 L33: 1.4590 L12: -0.1321 REMARK 3 L13: 1.8634 L23: 0.0213 REMARK 3 S TENSOR REMARK 3 S11: 0.1022 S12: -0.6190 S13: 0.0522 REMARK 3 S21: 0.0892 S22: -0.0262 S23: -0.0214 REMARK 3 S31: 0.0214 S32: -0.1547 S33: -0.0212 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'E' AND ((RESSEQ 2:119)) REMARK 3 ORIGIN FOR THE GROUP (A): 26.1353 5.3698 39.6381 REMARK 3 T TENSOR REMARK 3 T11: 0.3013 T22: 0.2948 REMARK 3 T33: 0.2968 T12: 0.0311 REMARK 3 T13: 0.0176 T23: 0.0363 REMARK 3 L TENSOR REMARK 3 L11: 1.4952 L22: 1.4520 REMARK 3 L33: 2.3148 L12: -0.2769 REMARK 3 L13: -0.2880 L23: 0.1505 REMARK 3 S TENSOR REMARK 3 S11: -0.0180 S12: -0.0530 S13: 0.0790 REMARK 3 S21: 0.1091 S22: 0.1261 S23: 0.1846 REMARK 3 S31: -0.2373 S32: -0.2254 S33: -0.1122 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'E' AND ((RESSEQ 120:158)) REMARK 3 ORIGIN FOR THE GROUP (A): 35.297 -9.433 62.348 REMARK 3 T TENSOR REMARK 3 T11: 0.3266 T22: 0.1992 REMARK 3 T33: 0.2932 T12: 0.0244 REMARK 3 T13: 0.0559 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 1.6323 L22: 0.9774 REMARK 3 L33: 2.1986 L12: 0.4750 REMARK 3 L13: 0.4350 L23: -0.2820 REMARK 3 S TENSOR REMARK 3 S11: -0.0680 S12: 0.2837 S13: -0.0148 REMARK 3 S21: -0.0218 S22: 0.1015 S23: 0.1801 REMARK 3 S31: -0.1031 S32: 0.1654 S33: -0.0849 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' REMARK 3 ORIGIN FOR THE GROUP (A): 14.4538 33.8013 2.7597 REMARK 3 T TENSOR REMARK 3 T11: 0.5050 T22: 0.3262 REMARK 3 T33: 0.2249 T12: 0.0057 REMARK 3 T13: 0.0335 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 3.7790 L22: 1.9122 REMARK 3 L33: 6.5121 L12: -0.1788 REMARK 3 L13: -2.4666 L23: 1.4459 REMARK 3 S TENSOR REMARK 3 S11: 0.4263 S12: 0.4753 S13: 0.0200 REMARK 3 S21: 0.0862 S22: -0.5894 S23: 0.0986 REMARK 3 S31: -0.7167 S32: -0.8125 S33: 0.0935 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'F' REMARK 3 ORIGIN FOR THE GROUP (A): 48.3897 3.0528 26.2473 REMARK 3 T TENSOR REMARK 3 T11: 0.4371 T22: 0.3906 REMARK 3 T33: 0.3790 T12: 0.0336 REMARK 3 T13: -0.0503 T23: -0.0483 REMARK 3 L TENSOR REMARK 3 L11: 1.5317 L22: 1.9438 REMARK 3 L33: 6.1333 L12: 1.3959 REMARK 3 L13: 2.1769 L23: 0.9590 REMARK 3 S TENSOR REMARK 3 S11: 0.0359 S12: -0.1990 S13: 0.5149 REMARK 3 S21: 0.3918 S22: 0.6071 S23: -0.6713 REMARK 3 S31: 0.5014 S32: 0.8589 S33: -0.6245 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XCU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1300003301. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29296 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 44.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12000 REMARK 200 FOR THE DATA SET : 10.8500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.64000 REMARK 200 FOR SHELL : 2.490 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5XCS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1M HEPES (PH REMARK 280 7.5), 25%(W/V) PEG3350, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.65500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 MET B 0 REMARK 465 TYR C 1 REMARK 465 MET D 0 REMARK 465 GLY D 114 REMARK 465 SER D 115 REMARK 465 ASP D 116 REMARK 465 TYR D 117 REMARK 465 GLU D 118 REMARK 465 LYS D 164 REMARK 465 MET E 0 REMARK 465 LYS E 107 REMARK 465 ALA E 108 REMARK 465 GLY E 109 REMARK 465 SER E 110 REMARK 465 ASP E 111 REMARK 465 TYR E 112 REMARK 465 GLU E 113 REMARK 465 LYS E 159 REMARK 465 TYR F 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 103 OE1 GLU B 105 2.12 REMARK 500 OH TYR C 3 O HOH C 101 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 42 6.35 -68.76 REMARK 500 ALA B 51 -34.35 64.39 REMARK 500 ALA B 84 -178.17 -173.75 REMARK 500 ALA E 51 -38.14 71.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 E 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5XCS RELATED DB: PDB REMARK 900 5XCS CONTAINS THE SAME PROTEIN WITH SLIGHTLY DIFFERENT FORMAT. REMARK 900 RELATED ID: 5XCV RELATED DB: PDB REMARK 900 RELATED ID: 5XCQ RELATED DB: PDB REMARK 900 RELATED ID: 5XCX RELATED DB: PDB REMARK 900 RELATED ID: 5XCT RELATED DB: PDB REMARK 900 RELATED ID: 5XCR RELATED DB: PDB DBREF 5XCU A 0 113 PDB 5XCU 5XCU 0 113 DBREF 5XCU A 114 164 PDB 5XCU 5XCU 114 164 DBREF 5XCU B 0 106 PDB 5XCU 5XCU 0 106 DBREF 5XCU B 107 157 PDB 5XCU 5XCU 107 157 DBREF 5XCU C 1 9 PDB 5XCU 5XCU 1 9 DBREF 5XCU D 0 113 PDB 5XCU 5XCU 0 113 DBREF 5XCU D 114 164 PDB 5XCU 5XCU 114 164 DBREF 5XCU E 0 106 PDB 5XCU 5XCU 0 106 DBREF 5XCU E 107 157 PDB 5XCU 5XCU 107 157 DBREF 5XCU F 1 9 PDB 5XCU 5XCU 1 9 SEQRES 1 A 172 MET GLU VAL LYS LEU VAL GLU SER GLY GLY ASP LEU VAL SEQRES 2 A 172 LYS PRO GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER SEQRES 3 A 172 GLY PHE THR PHE SER SER TYR GLY MET SER TRP VAL ARG SEQRES 4 A 172 GLN THR PRO ASP LYS ARG LEU GLU TRP VAL ALA THR ILE SEQRES 5 A 172 SER ARG GLY GLY SER TYR THR TYR TYR PRO ASP SER VAL SEQRES 6 A 172 LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN SEQRES 7 A 172 THR LEU TYR LEU GLN MET SER SER LEU LYS SER GLU ASP SEQRES 8 A 172 THR ALA MET TYR TYR CYS ALA ARG ARG GLU THR TYR ASP SEQRES 9 A 172 GLU LYS GLY PHE ALA TYR TRP GLY GLN GLY THR THR VAL SEQRES 10 A 172 THR VAL CYS SER GLY SER ASP TYR GLU PHE LEU LYS SER SEQRES 11 A 172 TRP THR VAL GLU ASP LEU GLN LYS ARG LEU LEU ALA LEU SEQRES 12 A 172 ASP PRO MET MET GLU GLN GLU ILE GLU GLU ILE ARG GLN SEQRES 13 A 172 LYS TYR GLN SER LYS ARG GLN PRO ILE LEU ASP ALA ILE SEQRES 14 A 172 GLU ALA LYS SEQRES 1 B 166 MET ASP ILE GLU LEU THR GLN SER PRO SER SER LEU THR SEQRES 2 B 166 VAL THR ALA GLY GLU LYS VAL THR MET SER CYS LYS SER SEQRES 3 B 166 SER GLN SER LEU LEU ASN SER GLY ASN GLN LYS ASN TYR SEQRES 4 B 166 LEU THR TRP TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS SEQRES 5 B 166 LEU LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL SEQRES 6 B 166 PRO ASP ARG PHE THR GLY SER GLY SER GLY ARG ASP PHE SEQRES 7 B 166 THR LEU THR ILE SER SER VAL GLN ALA GLU ASP LEU ALA SEQRES 8 B 166 VAL TYR TYR CYS GLN ASN ASP ASN SER HIS PRO LEU THR SEQRES 9 B 166 PHE GLY ALA GLY THR LYS LEU GLU LEU LYS ALA GLY SER SEQRES 10 B 166 ASP TYR GLU PHE LEU LYS SER TRP THR VAL GLU ASP LEU SEQRES 11 B 166 GLN LYS ARG LEU LEU ALA LEU ASP PRO MET MET GLU GLN SEQRES 12 B 166 GLU ILE GLU GLU ILE ARG GLN LYS TYR GLN CYS LYS ARG SEQRES 13 B 166 GLN PRO ILE LEU ASP ALA ILE GLU ALA LYS SEQRES 1 C 9 TYR PRO TYR ASP VAL PRO ASP TYR ALA SEQRES 1 D 172 MET GLU VAL LYS LEU VAL GLU SER GLY GLY ASP LEU VAL SEQRES 2 D 172 LYS PRO GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER SEQRES 3 D 172 GLY PHE THR PHE SER SER TYR GLY MET SER TRP VAL ARG SEQRES 4 D 172 GLN THR PRO ASP LYS ARG LEU GLU TRP VAL ALA THR ILE SEQRES 5 D 172 SER ARG GLY GLY SER TYR THR TYR TYR PRO ASP SER VAL SEQRES 6 D 172 LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN SEQRES 7 D 172 THR LEU TYR LEU GLN MET SER SER LEU LYS SER GLU ASP SEQRES 8 D 172 THR ALA MET TYR TYR CYS ALA ARG ARG GLU THR TYR ASP SEQRES 9 D 172 GLU LYS GLY PHE ALA TYR TRP GLY GLN GLY THR THR VAL SEQRES 10 D 172 THR VAL CYS SER GLY SER ASP TYR GLU PHE LEU LYS SER SEQRES 11 D 172 TRP THR VAL GLU ASP LEU GLN LYS ARG LEU LEU ALA LEU SEQRES 12 D 172 ASP PRO MET MET GLU GLN GLU ILE GLU GLU ILE ARG GLN SEQRES 13 D 172 LYS TYR GLN SER LYS ARG GLN PRO ILE LEU ASP ALA ILE SEQRES 14 D 172 GLU ALA LYS SEQRES 1 E 166 MET ASP ILE GLU LEU THR GLN SER PRO SER SER LEU THR SEQRES 2 E 166 VAL THR ALA GLY GLU LYS VAL THR MET SER CYS LYS SER SEQRES 3 E 166 SER GLN SER LEU LEU ASN SER GLY ASN GLN LYS ASN TYR SEQRES 4 E 166 LEU THR TRP TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS SEQRES 5 E 166 LEU LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL SEQRES 6 E 166 PRO ASP ARG PHE THR GLY SER GLY SER GLY ARG ASP PHE SEQRES 7 E 166 THR LEU THR ILE SER SER VAL GLN ALA GLU ASP LEU ALA SEQRES 8 E 166 VAL TYR TYR CYS GLN ASN ASP ASN SER HIS PRO LEU THR SEQRES 9 E 166 PHE GLY ALA GLY THR LYS LEU GLU LEU LYS ALA GLY SER SEQRES 10 E 166 ASP TYR GLU PHE LEU LYS SER TRP THR VAL GLU ASP LEU SEQRES 11 E 166 GLN LYS ARG LEU LEU ALA LEU ASP PRO MET MET GLU GLN SEQRES 12 E 166 GLU ILE GLU GLU ILE ARG GLN LYS TYR GLN CYS LYS ARG SEQRES 13 E 166 GLN PRO ILE LEU ASP ALA ILE GLU ALA LYS SEQRES 1 F 9 TYR PRO TYR ASP VAL PRO ASP TYR ALA HET SO4 A 201 5 HET SO4 E 201 5 HETNAM SO4 SULFATE ION FORMUL 7 SO4 2(O4 S 2-) FORMUL 9 HOH *151(H2 O) HELIX 1 AA1 THR A 28 TYR A 32 5 5 HELIX 2 AA2 LYS A 83 THR A 87 5 5 HELIX 3 AA3 TYR A 117 LYS A 121 5 5 HELIX 4 AA4 THR A 124 LYS A 164 1 41 HELIX 5 AA5 GLN B 79 LEU B 83 5 5 HELIX 6 AA6 SER B 110 LYS B 116 1 7 HELIX 7 AA7 THR B 119 ALA B 129 1 11 HELIX 8 AA8 ALA B 129 ALA B 158 1 30 HELIX 9 AA9 THR D 28 TYR D 32 5 5 HELIX 10 AB1 LYS D 83 THR D 87 5 5 HELIX 11 AB2 PHE D 119 TRP D 123 5 5 HELIX 12 AB3 THR D 124 ALA D 163 1 40 HELIX 13 AB4 GLN E 79 LEU E 83 5 5 HELIX 14 AB5 THR E 119 ALA E 129 1 11 HELIX 15 AB6 ALA E 129 ALA E 158 1 30 SHEET 1 AA1 4 LYS A 3 SER A 7 0 SHEET 2 AA1 4 LEU A 18 SER A 25 -1 O SER A 21 N SER A 7 SHEET 3 AA1 4 THR A 77 MET A 82 -1 O MET A 82 N LEU A 18 SHEET 4 AA1 4 PHE A 67 ASP A 72 -1 N SER A 70 O TYR A 79 SHEET 1 AA2 6 ASP A 10 VAL A 12 0 SHEET 2 AA2 6 THR A 107 VAL A 111 1 O THR A 110 N VAL A 12 SHEET 3 AA2 6 ALA A 88 ARG A 94 -1 N ALA A 88 O VAL A 109 SHEET 4 AA2 6 MET A 34 GLN A 39 -1 N VAL A 37 O TYR A 91 SHEET 5 AA2 6 LEU A 45 ILE A 51 -1 O GLU A 46 N ARG A 38 SHEET 6 AA2 6 THR A 57 TYR A 58 -1 O TYR A 58 N THR A 50 SHEET 1 AA3 4 LEU B 4 SER B 7 0 SHEET 2 AA3 4 VAL B 19 SER B 25 -1 O LYS B 24 N THR B 5 SHEET 3 AA3 4 ASP B 70 ILE B 75 -1 O LEU B 73 N MET B 21 SHEET 4 AA3 4 PHE B 62 SER B 67 -1 N SER B 65 O THR B 72 SHEET 1 AA4 6 SER B 10 VAL B 13 0 SHEET 2 AA4 6 THR B 102 LEU B 106 1 O GLU B 105 N LEU B 11 SHEET 3 AA4 6 VAL B 85 ASN B 90 -1 N TYR B 86 O THR B 102 SHEET 4 AA4 6 LEU B 33 GLN B 38 -1 N TYR B 36 O TYR B 87 SHEET 5 AA4 6 LYS B 45 TYR B 49 -1 O LEU B 47 N TRP B 35 SHEET 6 AA4 6 THR B 53 ARG B 54 -1 O THR B 53 N TYR B 49 SHEET 1 AA5 4 SER B 10 VAL B 13 0 SHEET 2 AA5 4 THR B 102 LEU B 106 1 O GLU B 105 N LEU B 11 SHEET 3 AA5 4 VAL B 85 ASN B 90 -1 N TYR B 86 O THR B 102 SHEET 4 AA5 4 THR B 97 PHE B 98 -1 O THR B 97 N ASN B 90 SHEET 1 AA6 4 LYS D 3 SER D 7 0 SHEET 2 AA6 4 LEU D 18 SER D 25 -1 O SER D 21 N SER D 7 SHEET 3 AA6 4 THR D 77 MET D 82 -1 O MET D 82 N LEU D 18 SHEET 4 AA6 4 PHE D 67 ASP D 72 -1 N SER D 70 O TYR D 79 SHEET 1 AA7 6 LEU D 11 VAL D 12 0 SHEET 2 AA7 6 THR D 107 VAL D 111 1 O THR D 110 N VAL D 12 SHEET 3 AA7 6 ALA D 88 ARG D 94 -1 N TYR D 90 O THR D 107 SHEET 4 AA7 6 MET D 34 GLN D 39 -1 N VAL D 37 O TYR D 91 SHEET 5 AA7 6 LEU D 45 ILE D 51 -1 O GLU D 46 N ARG D 38 SHEET 6 AA7 6 THR D 57 TYR D 58 -1 O TYR D 58 N THR D 50 SHEET 1 AA8 4 LEU E 4 SER E 7 0 SHEET 2 AA8 4 VAL E 19 SER E 25 -1 O LYS E 24 N THR E 5 SHEET 3 AA8 4 ASP E 70 ILE E 75 -1 O LEU E 73 N MET E 21 SHEET 4 AA8 4 PHE E 62 SER E 67 -1 N THR E 63 O THR E 74 SHEET 1 AA9 6 SER E 10 THR E 12 0 SHEET 2 AA9 6 THR E 102 GLU E 105 1 O GLU E 105 N LEU E 11 SHEET 3 AA9 6 VAL E 85 ASN E 90 -1 N TYR E 86 O THR E 102 SHEET 4 AA9 6 LEU E 33 GLN E 38 -1 N GLN E 38 O VAL E 85 SHEET 5 AA9 6 LYS E 45 TYR E 49 -1 O LEU E 47 N TRP E 35 SHEET 6 AA9 6 THR E 53 ARG E 54 -1 O THR E 53 N TYR E 49 SHEET 1 AB1 4 SER E 10 THR E 12 0 SHEET 2 AB1 4 THR E 102 GLU E 105 1 O GLU E 105 N LEU E 11 SHEET 3 AB1 4 VAL E 85 ASN E 90 -1 N TYR E 86 O THR E 102 SHEET 4 AB1 4 THR E 97 PHE E 98 -1 O THR E 97 N ASN E 90 SSBOND 1 CYS A 22 CYS A 92 1555 1555 2.03 SSBOND 2 CYS A 112 CYS B 147 1555 1555 2.08 SSBOND 3 CYS B 23 CYS B 88 1555 1555 2.08 SSBOND 4 CYS D 22 CYS D 92 1555 1555 2.06 SSBOND 5 CYS D 112 CYS E 147 1555 1555 2.07 SSBOND 6 CYS E 23 CYS E 88 1555 1555 2.07 CISPEP 1 SER B 7 PRO B 8 0 -9.94 CISPEP 2 HIS B 94 PRO B 95 0 -8.47 CISPEP 3 SER E 7 PRO E 8 0 -15.19 CISPEP 4 HIS E 94 PRO E 95 0 -2.03 SITE 1 AC1 4 GLU A 100 ASN B 30A HOH B 238 TYR C 8 SITE 1 AC2 2 ASN E 30A TYR F 8 CRYST1 57.380 107.310 66.700 90.00 92.92 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017428 0.000000 0.000889 0.00000 SCALE2 0.000000 0.009319 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015012 0.00000