HEADER IMMUNE SYSTEM 23-MAR-17 5XCX TITLE CRYSTAL STRUCTURE OF TS2/16 FV-CLASP FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: VH(S112C)-SARAH CHIMERA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: VL-SARAH(S37C) CHIMERA; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 10090, 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 10090, 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTIBODY FRAGMENT, FV-CLASP, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR T.ARIMORI,J.TAKAGI REVDAT 2 18-OCT-17 5XCX 1 JRNL REVDAT 1 04-OCT-17 5XCX 0 JRNL AUTH T.ARIMORI,Y.KITAGO,M.UMITSU,Y.FUJII,R.ASAKI, JRNL AUTH 2 K.TAMURA-KAWAKAMI,J.TAKAGI JRNL TITL FV-CLASP: AN ARTIFICIALLY DESIGNED SMALL ANTIBODY FRAGMENT JRNL TITL 2 WITH IMPROVED PRODUCTION COMPATIBILITY, STABILITY, AND JRNL TITL 3 CRYSTALLIZABILITY JRNL REF STRUCTURE V. 25 1611 2017 JRNL REFN ISSN 1878-4186 JRNL PMID 28919443 JRNL DOI 10.1016/J.STR.2017.08.011 REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 25835 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1306 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.04 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1746 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2606 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 171 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : 0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.179 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.157 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.632 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2723 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2548 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3682 ; 1.288 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5918 ; 0.896 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 335 ; 5.797 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;30.489 ;24.248 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 485 ;12.321 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;16.620 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 401 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2991 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 584 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1328 ; 0.599 ; 2.082 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1327 ; 0.598 ; 2.081 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1658 ; 1.030 ; 3.114 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1659 ; 1.030 ; 3.115 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1392 ; 0.762 ; 2.237 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1392 ; 0.759 ; 2.237 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2021 ; 1.254 ; 3.309 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2967 ; 3.680 ;24.347 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2967 ; 3.679 ;24.342 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): -4.8270 34.3220 -23.0110 REMARK 3 T TENSOR REMARK 3 T11: 0.0989 T22: 0.1596 REMARK 3 T33: 0.0196 T12: -0.0543 REMARK 3 T13: 0.0304 T23: -0.0352 REMARK 3 L TENSOR REMARK 3 L11: 1.2339 L22: 0.6185 REMARK 3 L33: 1.0029 L12: 0.0963 REMARK 3 L13: -0.9226 L23: -0.0716 REMARK 3 S TENSOR REMARK 3 S11: -0.0880 S12: 0.1858 S13: -0.0616 REMARK 3 S21: 0.0449 S22: 0.0035 S23: 0.0325 REMARK 3 S31: 0.0374 S32: -0.1362 S33: 0.0845 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 113 REMARK 3 ORIGIN FOR THE GROUP (A): 11.7970 41.3960 -10.6230 REMARK 3 T TENSOR REMARK 3 T11: 0.1089 T22: 0.1194 REMARK 3 T33: 0.0143 T12: -0.0043 REMARK 3 T13: 0.0228 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.8193 L22: 0.5173 REMARK 3 L33: 1.5812 L12: 0.1585 REMARK 3 L13: 0.1015 L23: 0.8859 REMARK 3 S TENSOR REMARK 3 S11: -0.0422 S12: 0.0418 S13: -0.0101 REMARK 3 S21: 0.0475 S22: 0.0687 S23: -0.0191 REMARK 3 S31: 0.0798 S32: 0.0599 S33: -0.0265 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 122 A 164 REMARK 3 ORIGIN FOR THE GROUP (A): -18.763 42.761 4.609 REMARK 3 T TENSOR REMARK 3 T11: 0.1297 T22: 0.0983 REMARK 3 T33: 0.0747 T12: 0.0106 REMARK 3 T13: 0.0495 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 3.9132 L22: 7.2661 REMARK 3 L33: 0.8789 L12: 5.1049 REMARK 3 L13: 1.3067 L23: 2.1651 REMARK 3 S TENSOR REMARK 3 S11: 0.0765 S12: -0.1150 S13: 0.3433 REMARK 3 S21: 0.3057 S22: -0.1563 S23: 0.4603 REMARK 3 S31: 0.1316 S32: 0.0124 S33: 0.0799 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 114 B 159 REMARK 3 ORIGIN FOR THE GROUP (A): -10.9420 45.1380 -1.1780 REMARK 3 T TENSOR REMARK 3 T11: 0.1325 T22: 0.0921 REMARK 3 T33: 0.0711 T12: -0.0056 REMARK 3 T13: 0.0503 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 6.3312 L22: 7.8318 REMARK 3 L33: 0.8697 L12: 6.9957 REMARK 3 L13: 1.8066 L23: 2.0212 REMARK 3 S TENSOR REMARK 3 S11: -0.0729 S12: 0.2177 S13: 0.0769 REMARK 3 S21: 0.0274 S22: 0.1905 S23: 0.1169 REMARK 3 S31: -0.0212 S32: 0.0702 S33: -0.1176 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5XCX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1300003305. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27142 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 47.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 15.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12900 REMARK 200 FOR THE DATA SET : 18.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 15.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.96700 REMARK 200 FOR SHELL : 3.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M NAH2PO4/0.8M K2HPO4, 0.1M CAPS REMARK 280 (PH10.5), 0.2M LI2SO4, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.77000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.60000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.60000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.88500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.60000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.60000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 128.65500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.60000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.60000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 42.88500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.60000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.60000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 128.65500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 85.77000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 136 OD2 ASP A 136 7465 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 66 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 66 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 51 -47.03 72.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CXS A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CXS A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 206 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5XCQ RELATED DB: PDB REMARK 900 RELATED ID: 5XCR RELATED DB: PDB REMARK 900 RELATED ID: 5XCS RELATED DB: PDB REMARK 900 RELATED ID: 5XCT RELATED DB: PDB REMARK 900 RELATED ID: 5XCU RELATED DB: PDB REMARK 900 RELATED ID: 5XCV RELATED DB: PDB DBREF 5XCX A 0 113 PDB 5XCX 5XCX 0 113 DBREF 5XCX A 114 164 PDB 5XCX 5XCX 114 164 DBREF 5XCX B -3 108 PDB 5XCX 5XCX -3 108 DBREF 5XCX B 109 159 PDB 5XCX 5XCX 109 159 SEQRES 1 A 172 MET ASP VAL LYS LEU VAL GLU SER GLY GLY GLY LEU VAL SEQRES 2 A 172 LYS PRO GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER SEQRES 3 A 172 GLY PHE THR PHE SER SER TYR THR MET SER TRP VAL ARG SEQRES 4 A 172 GLN THR PRO GLU LYS ARG LEU GLU TRP VAL ALA THR ILE SEQRES 5 A 172 SER SER GLY GLY SER TYR THR TYR TYR PRO ASP SER VAL SEQRES 6 A 172 LYS GLY ARG PHE THR ILE SER ARG ASP LYS ALA LYS ASN SEQRES 7 A 172 THR LEU TYR LEU GLN MET GLY SER LEU LYS SER GLU ASP SEQRES 8 A 172 THR ALA MET TYR TYR CYS THR ARG ILE GLY TYR ASP GLU SEQRES 9 A 172 ASP TYR ALA MET ASP HIS TRP GLY GLN GLY THR SER VAL SEQRES 10 A 172 THR VAL CYS SER GLY SER ASP TYR GLU PHE LEU LYS SER SEQRES 11 A 172 TRP THR VAL GLU ASP LEU GLN LYS ARG LEU LEU ALA LEU SEQRES 12 A 172 ASP PRO MET MET GLU GLN GLU ILE GLU GLU ILE ARG GLN SEQRES 13 A 172 LYS TYR GLN SER LYS ARG GLN PRO ILE LEU ASP ALA ILE SEQRES 14 A 172 GLU ALA LYS SEQRES 1 B 164 GLY SER HIS MET GLN ILE VAL VAL THR GLN ARG PRO THR SEQRES 2 B 164 THR MET ALA ALA SER PRO GLY ASP LYS ILE ILE ILE THR SEQRES 3 B 164 CYS SER VAL SER SER ILE ILE SER SER ASN TYR LEU HIS SEQRES 4 B 164 TRP TYR SER GLN LYS PRO GLY PHE SER PRO LYS LEU LEU SEQRES 5 B 164 ILE TYR ARG THR SER ASN LEU ALA SER GLY VAL PRO PRO SEQRES 6 B 164 ARG PHE SER GLY SER GLY SER GLY THR SER TYR SER LEU SEQRES 7 B 164 THR ILE GLY THR MET GLU ALA GLU ASP VAL ALA THR TYR SEQRES 8 B 164 TYR CYS GLN GLN GLY SER ASP ILE PRO LEU THR PHE GLY SEQRES 9 B 164 ASP GLY THR LYS LEU ASP LEU LYS ARG GLY SER ASP TYR SEQRES 10 B 164 GLU PHE LEU LYS SER TRP THR VAL GLU ASP LEU GLN LYS SEQRES 11 B 164 ARG LEU LEU ALA LEU ASP PRO MET MET GLU GLN GLU ILE SEQRES 12 B 164 GLU GLU ILE ARG GLN LYS TYR GLN CYS LYS ARG GLN PRO SEQRES 13 B 164 ILE LEU ASP ALA ILE GLU ALA LYS HET PO4 A 201 5 HET PO4 A 202 5 HET PO4 A 203 5 HET CXS A 204 14 HET CXS A 205 14 HET GOL A 206 6 HETNAM PO4 PHOSPHATE ION HETNAM CXS 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PO4 3(O4 P 3-) FORMUL 6 CXS 2(C9 H19 N O3 S) FORMUL 8 GOL C3 H8 O3 FORMUL 9 HOH *171(H2 O) HELIX 1 AA1 THR A 28 TYR A 32 5 5 HELIX 2 AA2 PRO A 60 LYS A 64 5 5 HELIX 3 AA3 LYS A 83 THR A 87 5 5 HELIX 4 AA4 ASP A 116 LYS A 121 1 6 HELIX 5 AA5 THR A 124 ALA A 163 1 40 HELIX 6 AA6 SER B 30 ASN B 31 5 3 HELIX 7 AA7 GLU B 79 VAL B 83 5 5 HELIX 8 AA8 ASP B 111 LYS B 116 1 6 HELIX 9 AA9 THR B 119 ALA B 158 1 40 SHEET 1 AA1 4 LYS A 3 SER A 7 0 SHEET 2 AA1 4 LEU A 18 SER A 25 -1 O SER A 25 N LYS A 3 SHEET 3 AA1 4 THR A 77 MET A 82 -1 O MET A 82 N LEU A 18 SHEET 4 AA1 4 PHE A 67 ASP A 72 -1 N SER A 70 O TYR A 79 SHEET 1 AA2 6 GLY A 10 VAL A 12 0 SHEET 2 AA2 6 THR A 107 VAL A 111 1 O THR A 110 N GLY A 10 SHEET 3 AA2 6 ALA A 88 ILE A 95 -1 N TYR A 90 O THR A 107 SHEET 4 AA2 6 THR A 33 GLN A 39 -1 N VAL A 37 O TYR A 91 SHEET 5 AA2 6 LEU A 45 ILE A 51 -1 O GLU A 46 N ARG A 38 SHEET 6 AA2 6 THR A 57 TYR A 58 -1 O TYR A 58 N THR A 50 SHEET 1 AA3 4 GLY A 10 VAL A 12 0 SHEET 2 AA3 4 THR A 107 VAL A 111 1 O THR A 110 N GLY A 10 SHEET 3 AA3 4 ALA A 88 ILE A 95 -1 N TYR A 90 O THR A 107 SHEET 4 AA3 4 MET A 100C TRP A 103 -1 O HIS A 102 N ARG A 94 SHEET 1 AA4 3 VAL B 4 ARG B 7 0 SHEET 2 AA4 3 ILE B 19 ILE B 29 -1 O SER B 24 N THR B 5 SHEET 3 AA4 3 PHE B 62 ILE B 75 -1 O LEU B 73 N ILE B 21 SHEET 1 AA5 6 THR B 10 ALA B 13 0 SHEET 2 AA5 6 THR B 102 LEU B 106 1 O ASP B 105 N MET B 11 SHEET 3 AA5 6 ALA B 84 GLN B 90 -1 N ALA B 84 O LEU B 104 SHEET 4 AA5 6 LEU B 33 GLN B 38 -1 N TYR B 36 O TYR B 87 SHEET 5 AA5 6 LYS B 45 TYR B 49 -1 O LEU B 47 N TRP B 35 SHEET 6 AA5 6 ASN B 53 LEU B 54 -1 O ASN B 53 N TYR B 49 SHEET 1 AA6 4 THR B 10 ALA B 13 0 SHEET 2 AA6 4 THR B 102 LEU B 106 1 O ASP B 105 N MET B 11 SHEET 3 AA6 4 ALA B 84 GLN B 90 -1 N ALA B 84 O LEU B 104 SHEET 4 AA6 4 THR B 97 PHE B 98 -1 O THR B 97 N GLN B 90 SSBOND 1 CYS A 22 CYS A 92 1555 1555 2.07 SSBOND 2 CYS A 112 CYS B 147 1555 1555 2.07 SSBOND 3 CYS B 23 CYS B 88 1555 1555 2.12 CISPEP 1 ARG B 7 PRO B 8 0 -7.28 CISPEP 2 ILE B 94 PRO B 95 0 1.25 SITE 1 AC1 5 GLU A 144 ARG A 147 HOH A 329 GLU B 135 SITE 2 AC1 5 ARG B 142 SITE 1 AC2 7 SER A 52 SER A 52A GLY A 53 GLY A 54 SITE 2 AC2 7 SER A 55 TYR A 56 LYS B 103 SITE 1 AC3 4 HIS A 102 TRP A 103 HOH A 317 HOH A 343 SITE 1 AC4 9 ASP A 98 HOH A 349 TYR B 32 GLY B 91 SITE 2 AC4 9 SER B 92 ARG B 108 GLY B 109 SER B 110 SITE 3 AC4 9 ASP B 111 SITE 1 AC5 6 ARG A 147 ARG A 154 HOH A 313 LEU B 128 SITE 2 AC5 6 ASP B 131 MET B 134 SITE 1 AC6 3 ASP A 101 HOH A 304 HOH A 355 CRYST1 69.200 69.200 171.540 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014451 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014451 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005830 0.00000