HEADER HYDROLASE 24-MAR-17 5XD0 TITLE APO STRUCTURE OF BETA-1,3-1,4-GLUCANASE FROM PAENIBACILLUS SP.X4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCANASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BETA-1,3-1,4-GLUCANASE; COMPND 5 EC: 3.2.1.73; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAENIBACILLUS SP. X4; SOURCE 3 ORGANISM_TAXID: 1392929; SOURCE 4 STRAIN: X4; SOURCE 5 GENE: LIC8H; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-1, 3-1, 4-GLUCANASE, GLUCAN BETA-1, 3 LINKAGE BETA-GLUCOSYL KEYWDS 2 HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.C.BAEK,T.-H.HO,L.-W.KANG,H.KIM REVDAT 3 22-NOV-23 5XD0 1 REMARK REVDAT 2 10-MAY-17 5XD0 1 JRNL REVDAT 1 19-APR-17 5XD0 0 SPRSDE 19-APR-17 5XD0 5X3A JRNL AUTH S.C.BAEK,T.H.HO,H.W.LEE,W.K.JUNG,H.S.GANG,L.W.KANG,H.KIM JRNL TITL IMPROVEMENT OF ENZYME ACTIVITY OF BETA-1,3-1,4-GLUCANASE JRNL TITL 2 FROM PAENIBACILLUS SP. X4 BY ERROR-PRONE PCR AND STRUCTURAL JRNL TITL 3 INSIGHTS OF MUTATED RESIDUES. JRNL REF APPL. MICROBIOL. BIOTECHNOL. V. 101 4073 2017 JRNL REFN ESSN 1432-0614 JRNL PMID 28180917 JRNL DOI 10.1007/S00253-017-8145-4 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 63477 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3379 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3971 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.1880 REMARK 3 BIN FREE R VALUE SET COUNT : 213 REMARK 3 BIN FREE R VALUE : 0.2440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5860 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 286 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.111 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.156 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6029 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 5326 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8190 ; 1.859 ; 1.915 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12268 ; 1.156 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 754 ; 6.187 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 276 ;37.254 ;25.217 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 928 ;13.730 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;17.230 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 858 ; 0.150 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7034 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1474 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3022 ; 1.320 ; 1.343 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3021 ; 1.318 ; 1.343 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3774 ; 1.917 ; 2.008 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3775 ; 1.917 ; 2.008 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3007 ; 2.102 ; 1.529 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3007 ; 2.098 ; 1.529 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4417 ; 3.159 ; 2.202 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7522 ; 3.899 ;11.441 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7489 ; 3.866 ;11.392 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5XD0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1300003308. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : DCM SI (111) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66856 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 65.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.37900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1V5C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M AMINO ACIDS, 12.5%(V/V) MPD, REMARK 280 12.5%(W/V) PEG 1000, 12.5%(W/V) PEG 3350, 0.1 M TRIS(BASE)/ REMARK 280 BICINE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 LYS A 3 REMARK 465 ASN A 4 REMARK 465 ARG A 5 REMARK 465 GLY A 6 REMARK 465 PHE A 7 REMARK 465 SER A 8 REMARK 465 VAL A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 LYS A 12 REMARK 465 ALA A 13 REMARK 465 VAL A 14 REMARK 465 MET A 15 REMARK 465 MET A 16 REMARK 465 CYS A 17 REMARK 465 CYS A 18 REMARK 465 LEU A 19 REMARK 465 ALA A 20 REMARK 465 PHE A 21 REMARK 465 LEU A 22 REMARK 465 LEU A 23 REMARK 465 ILE A 24 REMARK 465 PRO A 25 REMARK 465 ALA A 26 REMARK 465 SER A 27 REMARK 465 PHE A 28 REMARK 465 ALA A 29 REMARK 465 PHE A 30 REMARK 465 ALA A 31 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 LYS B 3 REMARK 465 ASN B 4 REMARK 465 ARG B 5 REMARK 465 GLY B 6 REMARK 465 PHE B 7 REMARK 465 SER B 8 REMARK 465 VAL B 9 REMARK 465 SER B 10 REMARK 465 SER B 11 REMARK 465 LYS B 12 REMARK 465 ALA B 13 REMARK 465 VAL B 14 REMARK 465 MET B 15 REMARK 465 MET B 16 REMARK 465 CYS B 17 REMARK 465 CYS B 18 REMARK 465 LEU B 19 REMARK 465 ALA B 20 REMARK 465 PHE B 21 REMARK 465 LEU B 22 REMARK 465 LEU B 23 REMARK 465 ILE B 24 REMARK 465 PRO B 25 REMARK 465 ALA B 26 REMARK 465 SER B 27 REMARK 465 PHE B 28 REMARK 465 ALA B 29 REMARK 465 PHE B 30 REMARK 465 ALA B 31 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 722 O HOH B 611 1465 1.49 REMARK 500 O HOH B 733 O HOH B 738 1455 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 158 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 204 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP A 289 CB - CG - OD1 ANGL. DEV. = 8.0 DEGREES REMARK 500 LEU B 203 CB - CG - CD1 ANGL. DEV. = 10.5 DEGREES REMARK 500 ASP B 211 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG B 302 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 259 45.48 -146.32 REMARK 500 LEU A 284 -44.10 -145.38 REMARK 500 ASP A 293 -147.71 -132.06 REMARK 500 ASP A 339 48.42 -81.98 REMARK 500 LEU B 284 -47.44 -139.44 REMARK 500 ASP B 293 -150.29 -131.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 501 DBREF1 5XD0 A 1 409 UNP A0A088BCU2_9BACL DBREF2 5XD0 A A0A088BCU2 1 409 DBREF1 5XD0 B 1 409 UNP A0A088BCU2_9BACL DBREF2 5XD0 B A0A088BCU2 1 409 SEQRES 1 A 409 MET ARG LYS ASN ARG GLY PHE SER VAL SER SER LYS ALA SEQRES 2 A 409 VAL MET MET CYS CYS LEU ALA PHE LEU LEU ILE PRO ALA SEQRES 3 A 409 SER PHE ALA PHE ALA ALA PRO ASN LYS PRO PHE PRO GLN SEQRES 4 A 409 HIS THR THR TYR THR SER GLY SER ILE LYS PRO ASN HIS SEQRES 5 A 409 VAL THR GLN SER ALA MET ASP ASN SER VAL LYS ALA LYS SEQRES 6 A 409 TRP ASP SER TRP LYS SER ALA TYR LEU LYS THR ALA GLY SEQRES 7 A 409 THR GLY LYS TYR TYR VAL LYS TYR GLN SER ASN GLY ASP SEQRES 8 A 409 THR VAL SER GLU ALA HIS GLY TYR GLY MET LEU ALA THR SEQRES 9 A 409 VAL LEU MET ALA GLY TYR ASP SER ASN ALA GLN THR TYR SEQRES 10 A 409 PHE ASP GLY LEU TYR GLN TYR TYR LYS ALA HIS PRO SER SEQRES 11 A 409 SER ASN ASN SER LYS LEU MET ALA TRP LYS GLN ASN SER SEQRES 12 A 409 SER PHE GLN ASN ILE GLU GLY ASP ASP SER ALA THR ASP SEQRES 13 A 409 GLY ASP MET ASP ILE ALA TYR SER LEU LEU LEU ALA ASP SEQRES 14 A 409 LYS GLN TRP GLY SER SER GLY SER ILE ASN TYR LEU GLN SEQRES 15 A 409 ALA GLY LYS ASP ILE ILE ASN ALA ILE MET GLN SER ASP SEQRES 16 A 409 VAL ASN GLN SER GLN TRP THR LEU ARG LEU GLY ASP TRP SEQRES 17 A 409 ALA THR ASP ASN THR PHE LYS ASN ALA THR ARG PRO SER SEQRES 18 A 409 ASP PHE MET LEU ASN HIS LEU LYS ALA PHE GLN ALA ALA SEQRES 19 A 409 THR GLY ASP ALA ARG TRP ALA ASN VAL ILE ASP LYS THR SEQRES 20 A 409 TYR THR ILE ILE ASN SER LEU TYR ASN GLY TYR SER SER SEQRES 21 A 409 SER THR GLY LEU LEU PRO ASP PHE VAL VAL LEU SER GLY SEQRES 22 A 409 SER THR TYR LYS PRO ALA SER ALA ASP PHE LEU GLU GLY SEQRES 23 A 409 ALA ASN ASP GLY SER TYR ASP TYR ASN SER CYS ARG THR SEQRES 24 A 409 PRO TRP ARG ILE THR THR ASP TYR LEU MET THR GLY ASP SEQRES 25 A 409 SER ARG ALA LEU ASN GLN LEU ASN GLN MET ASN SER TRP SEQRES 26 A 409 ILE SER ALA LYS VAL SER GLY ASN PRO SER ASN VAL LYS SEQRES 27 A 409 ASP GLY TYR LYS LEU ASN GLY THR VAL THR GLY SER GLY SEQRES 28 A 409 GLY SER GLY ALA PHE TYR ALA PRO PHE GLY VAL SER ALA SEQRES 29 A 409 MET THR SER SER VAL ASN GLN ASN TRP LEU ASN SER VAL SEQRES 30 A 409 TRP THR LYS THR ALA GLY SER SER ASN GLU GLY TYR TYR SEQRES 31 A 409 GLU ASP SER ILE LYS LEU PHE SER MET ILE VAL MET SER SEQRES 32 A 409 GLY ASN TRP TRP THR TYR SEQRES 1 B 409 MET ARG LYS ASN ARG GLY PHE SER VAL SER SER LYS ALA SEQRES 2 B 409 VAL MET MET CYS CYS LEU ALA PHE LEU LEU ILE PRO ALA SEQRES 3 B 409 SER PHE ALA PHE ALA ALA PRO ASN LYS PRO PHE PRO GLN SEQRES 4 B 409 HIS THR THR TYR THR SER GLY SER ILE LYS PRO ASN HIS SEQRES 5 B 409 VAL THR GLN SER ALA MET ASP ASN SER VAL LYS ALA LYS SEQRES 6 B 409 TRP ASP SER TRP LYS SER ALA TYR LEU LYS THR ALA GLY SEQRES 7 B 409 THR GLY LYS TYR TYR VAL LYS TYR GLN SER ASN GLY ASP SEQRES 8 B 409 THR VAL SER GLU ALA HIS GLY TYR GLY MET LEU ALA THR SEQRES 9 B 409 VAL LEU MET ALA GLY TYR ASP SER ASN ALA GLN THR TYR SEQRES 10 B 409 PHE ASP GLY LEU TYR GLN TYR TYR LYS ALA HIS PRO SER SEQRES 11 B 409 SER ASN ASN SER LYS LEU MET ALA TRP LYS GLN ASN SER SEQRES 12 B 409 SER PHE GLN ASN ILE GLU GLY ASP ASP SER ALA THR ASP SEQRES 13 B 409 GLY ASP MET ASP ILE ALA TYR SER LEU LEU LEU ALA ASP SEQRES 14 B 409 LYS GLN TRP GLY SER SER GLY SER ILE ASN TYR LEU GLN SEQRES 15 B 409 ALA GLY LYS ASP ILE ILE ASN ALA ILE MET GLN SER ASP SEQRES 16 B 409 VAL ASN GLN SER GLN TRP THR LEU ARG LEU GLY ASP TRP SEQRES 17 B 409 ALA THR ASP ASN THR PHE LYS ASN ALA THR ARG PRO SER SEQRES 18 B 409 ASP PHE MET LEU ASN HIS LEU LYS ALA PHE GLN ALA ALA SEQRES 19 B 409 THR GLY ASP ALA ARG TRP ALA ASN VAL ILE ASP LYS THR SEQRES 20 B 409 TYR THR ILE ILE ASN SER LEU TYR ASN GLY TYR SER SER SEQRES 21 B 409 SER THR GLY LEU LEU PRO ASP PHE VAL VAL LEU SER GLY SEQRES 22 B 409 SER THR TYR LYS PRO ALA SER ALA ASP PHE LEU GLU GLY SEQRES 23 B 409 ALA ASN ASP GLY SER TYR ASP TYR ASN SER CYS ARG THR SEQRES 24 B 409 PRO TRP ARG ILE THR THR ASP TYR LEU MET THR GLY ASP SEQRES 25 B 409 SER ARG ALA LEU ASN GLN LEU ASN GLN MET ASN SER TRP SEQRES 26 B 409 ILE SER ALA LYS VAL SER GLY ASN PRO SER ASN VAL LYS SEQRES 27 B 409 ASP GLY TYR LYS LEU ASN GLY THR VAL THR GLY SER GLY SEQRES 28 B 409 GLY SER GLY ALA PHE TYR ALA PRO PHE GLY VAL SER ALA SEQRES 29 B 409 MET THR SER SER VAL ASN GLN ASN TRP LEU ASN SER VAL SEQRES 30 B 409 TRP THR LYS THR ALA GLY SER SER ASN GLU GLY TYR TYR SEQRES 31 B 409 GLU ASP SER ILE LYS LEU PHE SER MET ILE VAL MET SER SEQRES 32 B 409 GLY ASN TRP TRP THR TYR HET PGE A 501 10 HET PEG B 501 7 HETNAM PGE TRIETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 PGE C6 H14 O4 FORMUL 4 PEG C4 H10 O3 FORMUL 5 HOH *286(H2 O) HELIX 1 AA1 THR A 54 TYR A 73 1 20 HELIX 2 AA2 SER A 94 MET A 107 1 14 HELIX 3 AA3 ASN A 113 HIS A 128 1 16 HELIX 4 AA4 ALA A 154 GLY A 173 1 20 HELIX 5 AA5 ASN A 179 ASP A 195 1 17 HELIX 6 AA6 ARG A 219 PHE A 223 5 5 HELIX 7 AA7 MET A 224 GLY A 236 1 13 HELIX 8 AA8 ALA A 238 SER A 259 1 22 HELIX 9 AA9 ASN A 295 CYS A 297 5 3 HELIX 10 AB1 ARG A 298 GLY A 311 1 14 HELIX 11 AB2 ALA A 315 VAL A 330 1 16 HELIX 12 AB3 ASN A 333 VAL A 337 5 5 HELIX 13 AB4 SER A 353 ALA A 364 1 12 HELIX 14 AB5 MET A 365 VAL A 369 5 5 HELIX 15 AB6 ASN A 370 SER A 384 1 15 HELIX 16 AB7 GLY A 388 SER A 403 1 16 HELIX 17 AB8 THR B 54 TYR B 73 1 20 HELIX 18 AB9 SER B 94 ALA B 108 1 15 HELIX 19 AC1 ASN B 113 ALA B 127 1 15 HELIX 20 AC2 ALA B 154 GLY B 173 1 20 HELIX 21 AC3 ASN B 179 ASP B 195 1 17 HELIX 22 AC4 ARG B 219 PHE B 223 5 5 HELIX 23 AC5 MET B 224 GLY B 236 1 13 HELIX 24 AC6 ALA B 238 SER B 259 1 22 HELIX 25 AC7 ASN B 295 CYS B 297 5 3 HELIX 26 AC8 ARG B 298 GLY B 311 1 14 HELIX 27 AC9 ALA B 315 VAL B 330 1 16 HELIX 28 AD1 ASN B 333 VAL B 337 5 5 HELIX 29 AD2 SER B 353 MET B 365 1 13 HELIX 30 AD3 THR B 366 VAL B 369 5 4 HELIX 31 AD4 ASN B 370 SER B 384 1 15 HELIX 32 AD5 GLY B 388 SER B 403 1 16 SHEET 1 AA1 2 LEU A 74 THR A 76 0 SHEET 2 AA1 2 TYR A 82 VAL A 84 -1 O TYR A 83 N LYS A 75 SHEET 1 AA2 2 THR A 92 VAL A 93 0 SHEET 2 AA2 2 LYS A 140 GLN A 141 -1 O GLN A 141 N THR A 92 SHEET 1 AA3 2 VAL A 196 ASN A 197 0 SHEET 2 AA3 2 THR A 202 LEU A 203 -1 O THR A 202 N ASN A 197 SHEET 1 AA4 2 VAL A 269 SER A 272 0 SHEET 2 AA4 2 THR A 275 PRO A 278 -1 O LYS A 277 N VAL A 270 SHEET 1 AA5 2 LEU B 74 THR B 76 0 SHEET 2 AA5 2 TYR B 82 VAL B 84 -1 O TYR B 83 N LYS B 75 SHEET 1 AA6 2 THR B 92 VAL B 93 0 SHEET 2 AA6 2 LYS B 140 GLN B 141 -1 O GLN B 141 N THR B 92 SHEET 1 AA7 2 VAL B 196 ASN B 197 0 SHEET 2 AA7 2 THR B 202 LEU B 203 -1 O THR B 202 N ASN B 197 SHEET 1 AA8 2 VAL B 269 SER B 272 0 SHEET 2 AA8 2 THR B 275 PRO B 278 -1 O LYS B 277 N VAL B 270 CISPEP 1 PHE A 37 PRO A 38 0 3.08 CISPEP 2 ALA B 32 PRO B 33 0 -15.54 CISPEP 3 PHE B 37 PRO B 38 0 -1.70 SITE 1 AC1 6 GLU A 95 ALA A 154 ASP A 156 ASN A 295 SITE 2 AC1 6 HOH A 630 HOH A 675 SITE 1 AC2 6 TRP B 139 SER B 153 ALA B 154 LEU B 205 SITE 2 AC2 6 TRP B 208 ARG B 219 CRYST1 46.721 64.161 70.502 71.04 77.07 75.60 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021404 -0.005495 -0.003490 0.00000 SCALE2 0.000000 0.016091 -0.004790 0.00000 SCALE3 0.000000 0.000000 0.015184 0.00000