HEADER HYDROLASE 24-MAR-17 5XD5 TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM SMEGMATIS MUTT1 IN COMPLEX WITH TITLE 2 ATP, MAGNESIUM FLUORIDE AND PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROLASE, NUDIX FAMILY PROTEIN; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS (STRAIN ATCC 700084 / SOURCE 3 MC(2)155); SOURCE 4 ORGANISM_TAXID: 246196; SOURCE 5 STRAIN: ATCC 700084 / MC(2)155; SOURCE 6 GENE: MSMEG_2390; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: JW0097 KEYWDS NUDIX ENZYME, HISTIDINE PHOSPHATASE DOMAIN, INTERMOLECULAR INTERFACE KEYWDS 2 BINDING, DIADENOSINE POLYPHOSPHATES, ENZYME ACTION, FLUORIDE KEYWDS 3 INHIBITION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.M.ARIF,U.VARSHNEY,M.VIJAYAN REVDAT 3 22-NOV-23 5XD5 1 LINK REVDAT 2 27-SEP-17 5XD5 1 JRNL REVDAT 1 09-AUG-17 5XD5 0 JRNL AUTH S.M.ARIF,U.VARSHNEY,M.VIJAYAN JRNL TITL HYDROLYSIS OF DIADENOSINE POLYPHOSPHATES. EXPLORATION OF AN JRNL TITL 2 ADDITIONAL ROLE OF MYCOBACTERIUM SMEGMATIS MUTT1 JRNL REF J. STRUCT. BIOL. V. 199 165 2017 JRNL REFN ESSN 1095-8657 JRNL PMID 28705712 JRNL DOI 10.1016/J.JSB.2017.07.002 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.M.ARIF,A.G.PATIL,U.VARSHNEY,M.VIJAYAN REMARK 1 TITL BIOCHEMICAL AND STRUCTURAL STUDIES OF MYCOBACTERIUM REMARK 1 TITL 2 SMEGMATIS MUTT1, A SANITIZATION ENZYME WITH UNUSUAL MODES OF REMARK 1 TITL 3 ASSOCIATION REMARK 1 REF ACTA CRYSTALLOGR. D BIOL. V. D73 2017 REMARK 1 REF 2 CRYSTALLOGR. REMARK 1 REFN ESSN 1399-0047 REMARK 1 DOI 10.1107/S2059798317002534 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.M.ARIF,A.G.PATIL,U.VARSHNEY,M.VIJAYAN REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY STUDIES OF MUTT1 REMARK 1 TITL 2 (MSMEG_2390) FROM MYCOBACTERIUM SMEGMATIS. REMARK 1 REF ACTA CRYSTALLOGR. SECT. F V. 68 1214 2012 REMARK 1 REF 2 STRUCT. BIOL. CRYST. COMMUN. REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 23027750 REMARK 1 DOI 10.1107/S1744309112035804 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 61216 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3270 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4351 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 253 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4552 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 130 REMARK 3 SOLVENT ATOMS : 445 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.49000 REMARK 3 B22 (A**2) : 2.75000 REMARK 3 B33 (A**2) : -1.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.30000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.106 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.923 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4820 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4600 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6564 ; 1.851 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10559 ; 0.864 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 588 ; 6.289 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 222 ;28.223 ;22.523 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 790 ;13.869 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 57 ;17.966 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 714 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5391 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1092 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2343 ; 2.788 ; 2.999 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2342 ; 2.786 ; 2.997 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2934 ; 3.903 ; 4.479 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2935 ; 3.902 ; 4.481 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2477 ; 3.526 ; 3.455 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2477 ; 3.526 ; 3.455 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3631 ; 5.310 ; 5.003 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5845 ; 7.327 ;25.538 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5670 ; 7.238 ;25.134 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5XD5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1300003260. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95372 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64503 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 54.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5GG5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM ACETATE TRIHYDRATE, 0.1M REMARK 280 TRIS-HCL PH 8.5, 30%(W/V) PEG4000, MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.22000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 MET B 2 REMARK 465 PRO B 3 REMARK 465 VAL B 4 REMARK 465 ASP B 5 REMARK 465 ASP B 6 REMARK 465 LEU B 7 REMARK 465 GLN B 8 REMARK 465 GLU B 9 REMARK 465 ILE B 10 REMARK 465 PRO B 11 REMARK 465 LEU B 12 REMARK 465 SER B 13 REMARK 465 LYS B 14 REMARK 465 ASP B 15 REMARK 465 THR B 16 REMARK 465 THR B 17 REMARK 465 GLU B 18 REMARK 465 LYS B 19 REMARK 465 SER B 20 REMARK 465 LYS B 21 REMARK 465 SER B 36 REMARK 465 GLU B 37 REMARK 465 HIS B 38 REMARK 465 GLY B 39 REMARK 465 GLY B 40 REMARK 465 THR B 41 REMARK 465 THR B 42 REMARK 465 GLY B 43 REMARK 465 HIS B 44 REMARK 465 PRO B 45 REMARK 465 ALA B 46 REMARK 465 LYS B 322 REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 PRO A 3 REMARK 465 VAL A 4 REMARK 465 ASP A 5 REMARK 465 ASP A 6 REMARK 465 LEU A 7 REMARK 465 GLN A 8 REMARK 465 GLU A 9 REMARK 465 ILE A 10 REMARK 465 PRO A 11 REMARK 465 LEU A 12 REMARK 465 SER A 13 REMARK 465 LYS A 14 REMARK 465 ASP A 15 REMARK 465 THR A 16 REMARK 465 THR A 17 REMARK 465 GLU A 18 REMARK 465 LYS A 19 REMARK 465 SER A 20 REMARK 465 LYS A 21 REMARK 465 HIS A 22 REMARK 465 SER A 36 REMARK 465 GLU A 37 REMARK 465 HIS A 38 REMARK 465 GLY A 39 REMARK 465 GLY A 40 REMARK 465 THR A 41 REMARK 465 THR A 42 REMARK 465 GLY A 43 REMARK 465 HIS A 44 REMARK 465 PRO A 45 REMARK 465 ALA A 46 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS B 22 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 178 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 180 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 243 O HOH B 501 2.08 REMARK 500 O GLY B 181 O HOH B 502 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 94 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ASP A 148 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 182 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 173 39.09 -146.85 REMARK 500 ASP B 248 79.68 -154.88 REMARK 500 THR B 270 -159.27 -140.36 REMARK 500 ASN B 295 32.76 -158.31 REMARK 500 ASN A 125 -158.76 -140.24 REMARK 500 ALA A 173 44.30 -144.65 REMARK 500 ASN A 295 37.72 -156.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 407 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS B 65 O REMARK 620 2 GLU B 85 OE2 85.7 REMARK 620 3 GLU B 127 OE2 170.6 86.1 REMARK 620 4 ATP B 401 O1G 94.1 173.7 94.7 REMARK 620 5 HOH B 588 O 88.1 89.1 87.3 97.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 408 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 81 OE1 REMARK 620 2 GLU B 85 OE2 89.0 REMARK 620 3 GLU B 127 OE1 169.5 83.8 REMARK 620 4 HOH B 613 O 86.9 110.1 88.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 409 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 81 OE2 REMARK 620 2 HOH B 531 O 171.8 REMARK 620 3 HOH B 571 O 86.9 89.1 REMARK 620 4 HOH B 606 O 84.9 87.7 86.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 407 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 182 OD2 REMARK 620 2 GLU A 81 OE2 101.2 REMARK 620 3 HOH A 515 O 105.6 4.4 REMARK 620 4 HOH A 549 O 104.7 4.2 2.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 408 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 182 OD1 REMARK 620 2 HOH B 671 O 86.5 REMARK 620 3 ATP A 401 O3G 84.5 3.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 410 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP B 401 O3G REMARK 620 2 PO4 B 402 O1 96.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 65 O REMARK 620 2 GLU A 85 OE1 85.8 REMARK 620 3 GLU A 127 OE1 166.7 85.9 REMARK 620 4 ATP A 401 O1G 94.4 172.8 95.2 REMARK 620 5 HOH A 564 O 82.8 89.7 86.9 97.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 406 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 81 OE1 REMARK 620 2 GLU A 85 OE1 88.1 REMARK 620 3 GLU A 127 OE2 161.9 77.1 REMARK 620 4 HOH A 531 O 85.2 111.9 90.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F B 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F B 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F B 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 415 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5XD4 RELATED DB: PDB REMARK 900 RELATED ID: 5XD3 RELATED DB: PDB REMARK 900 RELATED ID: 5XD2 RELATED DB: PDB REMARK 900 RELATED ID: 5XD1 RELATED DB: PDB DBREF 5XD5 B 1 322 UNP A0QUZ2 A0QUZ2_MYCS2 1 322 DBREF 5XD5 A 1 322 UNP A0QUZ2 A0QUZ2_MYCS2 1 322 SEQADV 5XD5 MET B -19 UNP A0QUZ2 INITIATING METHIONINE SEQADV 5XD5 GLY B -18 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 SER B -17 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 SER B -16 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 HIS B -15 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 HIS B -14 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 HIS B -13 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 HIS B -12 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 HIS B -11 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 HIS B -10 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 SER B -9 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 SER B -8 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 GLY B -7 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 LEU B -6 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 VAL B -5 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 PRO B -4 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 ARG B -3 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 GLY B -2 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 SER B -1 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 HIS B 0 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 MET A -19 UNP A0QUZ2 INITIATING METHIONINE SEQADV 5XD5 GLY A -18 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 SER A -17 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 SER A -16 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 HIS A -15 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 HIS A -14 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 HIS A -13 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 HIS A -12 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 HIS A -11 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 HIS A -10 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 SER A -9 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 SER A -8 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 GLY A -7 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 LEU A -6 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 VAL A -5 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 PRO A -4 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 ARG A -3 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 GLY A -2 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 SER A -1 UNP A0QUZ2 EXPRESSION TAG SEQADV 5XD5 HIS A 0 UNP A0QUZ2 EXPRESSION TAG SEQRES 1 B 342 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 342 LEU VAL PRO ARG GLY SER HIS MET MET PRO VAL ASP ASP SEQRES 3 B 342 LEU GLN GLU ILE PRO LEU SER LYS ASP THR THR GLU LYS SEQRES 4 B 342 SER LYS HIS THR VAL ARG ALA ALA GLY ALA VAL LEU TRP SEQRES 5 B 342 ARG ASP ALA SER GLU HIS GLY GLY THR THR GLY HIS PRO SEQRES 6 B 342 ALA THR VAL GLU VAL ALA VAL ILE HIS ARG PRO ARG TYR SEQRES 7 B 342 ASP ASP TRP SER LEU PRO LYS GLY LYS LEU ASP GLN GLY SEQRES 8 B 342 GLU THR GLU PRO VAL ALA ALA ALA ARG GLU ILE HIS GLU SEQRES 9 B 342 GLU THR GLY HIS THR ALA VAL LEU GLY ARG ARG LEU GLY SEQRES 10 B 342 ARG VAL THR TYR PRO ILE PRO GLN GLY THR LYS ARG VAL SEQRES 11 B 342 TRP TYR TRP ALA ALA LYS SER THR GLY GLY ASP PHE SER SEQRES 12 B 342 PRO ASN ASP GLU VAL ASP LYS LEU VAL TRP LEU PRO VAL SEQRES 13 B 342 ASP ALA ALA MET ASP GLN LEU GLN TYR PRO ASP ASP ARG SEQRES 14 B 342 LYS VAL LEU ARG ARG PHE VAL LYS ARG PRO VAL ASP THR SEQRES 15 B 342 LYS THR VAL LEU VAL VAL ARG HIS GLY THR ALA GLY ARG SEQRES 16 B 342 ARG SER ARG TYR LYS GLY ASP ASP ARG LYS ARG PRO LEU SEQRES 17 B 342 ASP LYS ARG GLY ARG ALA GLN ALA GLU ALA LEU VAL ALA SEQRES 18 B 342 GLN LEU MET ALA PHE GLY ALA THR THR LEU TYR ALA ALA SEQRES 19 B 342 ASP ARG VAL ARG CYS HIS GLN THR ILE GLU PRO LEU ALA SEQRES 20 B 342 GLN GLU LEU ASP GLN LEU ILE HIS ASN GLU PRO LEU LEU SEQRES 21 B 342 THR GLU GLU ALA TYR ALA ALA ASP HIS LYS ALA ALA ARG SEQRES 22 B 342 LYS ARG LEU LEU GLU ILE ALA GLY ARG PRO GLY ASN PRO SEQRES 23 B 342 VAL ILE CYS THR GLN GLY LYS VAL ILE PRO GLY LEU ILE SEQRES 24 B 342 GLU TRP TRP CYS GLU ARG ALA LYS VAL ARG PRO GLU THR SEQRES 25 B 342 THR GLY ASN ARG LYS GLY SER THR TRP VAL LEU SER LEU SEQRES 26 B 342 SER ASP GLY GLU LEU VAL GLY ALA ASP TYR LEU SER PRO SEQRES 27 B 342 PRO ASP GLU LYS SEQRES 1 A 342 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 342 LEU VAL PRO ARG GLY SER HIS MET MET PRO VAL ASP ASP SEQRES 3 A 342 LEU GLN GLU ILE PRO LEU SER LYS ASP THR THR GLU LYS SEQRES 4 A 342 SER LYS HIS THR VAL ARG ALA ALA GLY ALA VAL LEU TRP SEQRES 5 A 342 ARG ASP ALA SER GLU HIS GLY GLY THR THR GLY HIS PRO SEQRES 6 A 342 ALA THR VAL GLU VAL ALA VAL ILE HIS ARG PRO ARG TYR SEQRES 7 A 342 ASP ASP TRP SER LEU PRO LYS GLY LYS LEU ASP GLN GLY SEQRES 8 A 342 GLU THR GLU PRO VAL ALA ALA ALA ARG GLU ILE HIS GLU SEQRES 9 A 342 GLU THR GLY HIS THR ALA VAL LEU GLY ARG ARG LEU GLY SEQRES 10 A 342 ARG VAL THR TYR PRO ILE PRO GLN GLY THR LYS ARG VAL SEQRES 11 A 342 TRP TYR TRP ALA ALA LYS SER THR GLY GLY ASP PHE SER SEQRES 12 A 342 PRO ASN ASP GLU VAL ASP LYS LEU VAL TRP LEU PRO VAL SEQRES 13 A 342 ASP ALA ALA MET ASP GLN LEU GLN TYR PRO ASP ASP ARG SEQRES 14 A 342 LYS VAL LEU ARG ARG PHE VAL LYS ARG PRO VAL ASP THR SEQRES 15 A 342 LYS THR VAL LEU VAL VAL ARG HIS GLY THR ALA GLY ARG SEQRES 16 A 342 ARG SER ARG TYR LYS GLY ASP ASP ARG LYS ARG PRO LEU SEQRES 17 A 342 ASP LYS ARG GLY ARG ALA GLN ALA GLU ALA LEU VAL ALA SEQRES 18 A 342 GLN LEU MET ALA PHE GLY ALA THR THR LEU TYR ALA ALA SEQRES 19 A 342 ASP ARG VAL ARG CYS HIS GLN THR ILE GLU PRO LEU ALA SEQRES 20 A 342 GLN GLU LEU ASP GLN LEU ILE HIS ASN GLU PRO LEU LEU SEQRES 21 A 342 THR GLU GLU ALA TYR ALA ALA ASP HIS LYS ALA ALA ARG SEQRES 22 A 342 LYS ARG LEU LEU GLU ILE ALA GLY ARG PRO GLY ASN PRO SEQRES 23 A 342 VAL ILE CYS THR GLN GLY LYS VAL ILE PRO GLY LEU ILE SEQRES 24 A 342 GLU TRP TRP CYS GLU ARG ALA LYS VAL ARG PRO GLU THR SEQRES 25 A 342 THR GLY ASN ARG LYS GLY SER THR TRP VAL LEU SER LEU SEQRES 26 A 342 SER ASP GLY GLU LEU VAL GLY ALA ASP TYR LEU SER PRO SEQRES 27 A 342 PRO ASP GLU LYS HET ATP B 401 31 HET PO4 B 402 5 HET GOL B 403 6 HET GOL B 404 6 HET GOL B 405 6 HET GOL B 406 6 HET MG B 407 1 HET MG B 408 1 HET MG B 409 1 HET MG B 410 1 HET F B 411 1 HET F B 412 1 HET F B 413 1 HET CL B 414 1 HET CL B 415 1 HET CL B 416 1 HET ATP A 401 31 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET MG A 405 1 HET MG A 406 1 HET MG A 407 1 HET MG A 408 1 HET F A 409 1 HET F A 410 1 HET F A 411 1 HET CL A 412 1 HET CL A 413 1 HET CL A 414 1 HET CL A 415 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM F FLUORIDE ION HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ATP 2(C10 H16 N5 O13 P3) FORMUL 4 PO4 O4 P 3- FORMUL 5 GOL 7(C3 H8 O3) FORMUL 9 MG 8(MG 2+) FORMUL 13 F 6(F 1-) FORMUL 16 CL 7(CL 1-) FORMUL 34 HOH *445(H2 O) HELIX 1 AA1 THR B 73 GLY B 87 1 15 HELIX 2 AA2 PRO B 135 LEU B 143 1 9 HELIX 3 AA3 TYR B 145 LYS B 157 1 13 HELIX 4 AA4 ARG B 175 TYR B 179 5 5 HELIX 5 AA5 ASP B 182 ARG B 186 5 5 HELIX 6 AA6 ASP B 189 ALA B 205 1 17 HELIX 7 AA7 ARG B 216 ASP B 231 1 16 HELIX 8 AA8 PRO B 238 LEU B 240 5 3 HELIX 9 AA9 THR B 241 ASP B 248 1 8 HELIX 10 AB1 ASP B 248 ARG B 262 1 15 HELIX 11 AB2 VAL B 274 LYS B 287 1 14 HELIX 12 AB3 THR A 73 GLY A 87 1 15 HELIX 13 AB4 VAL A 136 LEU A 143 1 8 HELIX 14 AB5 TYR A 145 LYS A 157 1 13 HELIX 15 AB6 ASP A 182 ARG A 186 5 5 HELIX 16 AB7 ASP A 189 PHE A 206 1 18 HELIX 17 AB8 ARG A 216 ASP A 231 1 16 HELIX 18 AB9 PRO A 238 LEU A 240 5 3 HELIX 19 AC1 THR A 241 ASP A 248 1 8 HELIX 20 AC2 ASP A 248 ARG A 262 1 15 HELIX 21 AC3 VAL A 274 LYS A 287 1 14 SHEET 1 AA1 5 ASP B 60 SER B 62 0 SHEET 2 AA1 5 GLU B 49 ARG B 55 -1 N ILE B 53 O SER B 62 SHEET 3 AA1 5 THR B 23 ARG B 33 -1 N LEU B 31 O ALA B 51 SHEET 4 AA1 5 GLY B 106 GLY B 119 1 O ARG B 109 N ALA B 26 SHEET 5 AA1 5 THR B 89 ILE B 103 -1 N TYR B 101 O LYS B 108 SHEET 1 AA2 4 LYS B 65 LYS B 67 0 SHEET 2 AA2 4 THR B 23 ARG B 33 -1 N ALA B 27 O GLY B 66 SHEET 3 AA2 4 GLU B 49 ARG B 55 -1 O ALA B 51 N LEU B 31 SHEET 4 AA2 4 LYS B 130 LEU B 134 -1 O LEU B 134 N VAL B 50 SHEET 1 AA3 6 ILE B 234 GLU B 237 0 SHEET 2 AA3 6 THR B 210 ALA B 214 1 N LEU B 211 O HIS B 235 SHEET 3 AA3 6 PRO B 266 THR B 270 1 O CYS B 269 N ALA B 214 SHEET 4 AA3 6 LYS B 163 ARG B 169 1 N LEU B 166 O ILE B 268 SHEET 5 AA3 6 THR B 300 SER B 306 -1 O TRP B 301 N VAL B 167 SHEET 6 AA3 6 GLU B 309 LEU B 316 -1 O LEU B 316 N THR B 300 SHEET 1 AA4 5 ASP A 60 SER A 62 0 SHEET 2 AA4 5 GLU A 49 ARG A 55 -1 N ILE A 53 O SER A 62 SHEET 3 AA4 5 VAL A 24 ARG A 33 -1 N ARG A 33 O GLU A 49 SHEET 4 AA4 5 GLY A 106 GLY A 120 1 O THR A 107 N VAL A 24 SHEET 5 AA4 5 HIS A 88 ILE A 103 -1 N LEU A 96 O TYR A 112 SHEET 1 AA5 4 LYS A 65 LYS A 67 0 SHEET 2 AA5 4 VAL A 24 ARG A 33 -1 N ALA A 27 O GLY A 66 SHEET 3 AA5 4 GLU A 49 ARG A 55 -1 O GLU A 49 N ARG A 33 SHEET 4 AA5 4 LYS A 130 PRO A 135 -1 O LEU A 134 N VAL A 50 SHEET 1 AA6 6 ILE A 234 GLU A 237 0 SHEET 2 AA6 6 THR A 210 ALA A 214 1 N ALA A 213 O HIS A 235 SHEET 3 AA6 6 PRO A 266 THR A 270 1 O VAL A 267 N THR A 210 SHEET 4 AA6 6 LYS A 163 ARG A 169 1 N LEU A 166 O ILE A 268 SHEET 5 AA6 6 THR A 300 SER A 306 -1 O LEU A 305 N LYS A 163 SHEET 6 AA6 6 GLU A 309 LEU A 316 -1 O LEU A 316 N THR A 300 LINK O LYS B 65 MG MG B 407 1555 1555 2.14 LINK OE1 GLU B 81 MG MG B 408 1555 1555 2.06 LINK OE2 GLU B 81 MG MG B 409 1555 1555 2.16 LINK OE2 GLU B 85 MG MG B 407 1555 1555 2.10 LINK OE2 GLU B 85 MG MG B 408 1555 1555 2.12 LINK OE2 GLU B 127 MG MG B 407 1555 1555 2.16 LINK OE1 GLU B 127 MG MG B 408 1555 1555 2.09 LINK OD2 ASP B 182 MG MG A 407 1555 2756 2.10 LINK OD1 ASP B 182 MG MG A 408 1555 2756 2.17 LINK O1G ATP B 401 MG MG B 407 1555 1555 1.92 LINK O3G ATP B 401 MG MG B 410 1555 1555 1.96 LINK O1 PO4 B 402 MG MG B 410 1555 1555 1.89 LINK MG MG B 407 O HOH B 588 1555 1555 2.04 LINK MG MG B 408 O HOH B 613 1555 1555 2.07 LINK MG MG B 409 O HOH B 531 1555 1555 2.14 LINK MG MG B 409 O HOH B 571 1555 1555 2.03 LINK MG MG B 409 O HOH B 606 1555 1555 2.07 LINK O HOH B 671 MG MG A 408 2746 1555 2.17 LINK O LYS A 65 MG MG A 405 1555 1555 2.12 LINK OE1 GLU A 81 MG MG A 406 1555 1555 2.07 LINK OE2 GLU A 81 MG MG A 407 1555 1555 2.09 LINK OE1 GLU A 85 MG MG A 405 1555 1555 2.04 LINK OE1 GLU A 85 MG MG A 406 1555 1555 2.32 LINK OE1 GLU A 127 MG MG A 405 1555 1555 2.13 LINK OE2 GLU A 127 MG MG A 406 1555 1555 2.16 LINK O1G ATP A 401 MG MG A 405 1555 1555 1.94 LINK O3G ATP A 401 MG MG A 408 1555 1555 1.93 LINK MG MG A 405 O HOH A 564 1555 1555 2.11 LINK MG MG A 406 O HOH A 531 1555 1555 2.08 LINK MG MG A 407 O HOH A 515 1555 1555 2.03 LINK MG MG A 407 O HOH A 549 1555 1555 2.01 SITE 1 AC1 24 ARG B 55 ARG B 57 TYR B 58 LYS B 65 SITE 2 AC1 24 LYS B 67 TYR B 101 LYS B 108 GLU B 127 SITE 3 AC1 24 TYR B 145 ASP B 148 PO4 B 402 MG B 407 SITE 4 AC1 24 MG B 410 F B 411 F B 413 HOH B 578 SITE 5 AC1 24 HOH B 588 HOH B 595 HOH B 612 HOH B 615 SITE 6 AC1 24 HOH B 626 HOH B 629 HOH B 696 HOH B 699 SITE 1 AC2 13 ARG B 57 LYS B 67 HIS B 249 LYS B 250 SITE 2 AC2 13 ARG B 253 ATP B 401 MG B 410 F B 411 SITE 3 AC2 13 F B 412 F B 413 HOH B 531 HOH B 575 SITE 4 AC2 13 HOH B 653 SITE 1 AC3 6 ARG B 95 TRP B 111 LEU B 316 HOH B 542 SITE 2 AC3 6 HOH B 631 HOH B 687 SITE 1 AC4 7 ARG B 184 ASP B 215 ARG B 216 VAL B 217 SITE 2 AC4 7 HIS B 220 HOH B 507 HOH B 754 SITE 1 AC5 7 ARG B 25 LEU B 68 ASP B 69 GLN B 70 SITE 2 AC5 7 GLY B 71 GLU B 72 HOH B 682 SITE 1 AC6 7 ILE B 275 PRO B 276 GLU B 280 GLY B 294 SITE 2 AC6 7 ASN B 295 TRP B 301 HOH B 559 SITE 1 AC7 8 LYS B 65 GLU B 85 GLU B 127 ATP B 401 SITE 2 AC7 8 MG B 408 MG B 410 F B 411 HOH B 588 SITE 1 AC8 9 GLU B 81 GLU B 85 GLU B 127 MG B 407 SITE 2 AC8 9 MG B 409 MG B 410 F B 411 F B 412 SITE 3 AC8 9 HOH B 613 SITE 1 AC9 8 GLU B 81 MG B 408 MG B 410 F B 412 SITE 2 AC9 8 F B 413 HOH B 531 HOH B 571 HOH B 606 SITE 1 AD1 10 LYS B 67 GLU B 127 ATP B 401 PO4 B 402 SITE 2 AD1 10 MG B 407 MG B 408 MG B 409 F B 411 SITE 3 AD1 10 F B 412 F B 413 SITE 1 AD2 12 LYS B 65 GLY B 66 GLU B 81 GLU B 85 SITE 2 AD2 12 GLU B 127 ATP B 401 PO4 B 402 MG B 407 SITE 3 AD2 12 MG B 408 MG B 410 F B 412 F B 413 SITE 1 AD3 12 GLU B 81 GLU B 127 LYS B 250 PO4 B 402 SITE 2 AD3 12 MG B 408 MG B 409 MG B 410 F B 411 SITE 3 AD3 12 F B 413 HOH B 531 HOH B 571 HOH B 613 SITE 1 AD4 11 GLY B 66 LYS B 67 GLU B 81 ATP B 401 SITE 2 AD4 11 PO4 B 402 MG B 409 MG B 410 F B 411 SITE 3 AD4 11 F B 412 HOH B 531 HOH B 606 SITE 1 AD5 3 HIS B 170 ARG B 186 HOH B 665 SITE 1 AD6 2 TRP B 282 LEU B 310 SITE 1 AD7 3 ARG B 296 LYS B 297 HOH B 749 SITE 1 AD8 18 ARG A 55 TYR A 58 LYS A 65 LYS A 67 SITE 2 AD8 18 TYR A 101 LYS A 108 GLU A 127 TYR A 145 SITE 3 AD8 18 MG A 405 MG A 408 F A 409 F A 411 SITE 4 AD8 18 HOH A 509 HOH A 557 HOH A 564 HOH A 591 SITE 5 AD8 18 HOH A 601 HOH A 603 SITE 1 AD9 8 ARG A 95 TRP A 111 TYR A 315 LEU A 316 SITE 2 AD9 8 SER A 317 HOH A 562 HOH A 588 HOH A 598 SITE 1 AE1 4 ASP A 215 ARG A 216 HIS A 220 HOH A 592 SITE 1 AE2 1 ASP A 126 SITE 1 AE3 8 LYS A 65 GLU A 85 GLU A 127 ATP A 401 SITE 2 AE3 8 MG A 406 MG A 408 F A 409 HOH A 564 SITE 1 AE4 9 GLU A 81 GLU A 85 GLU A 127 MG A 405 SITE 2 AE4 9 MG A 407 MG A 408 F A 409 F A 410 SITE 3 AE4 9 HOH A 531 SITE 1 AE5 7 GLU A 81 MG A 406 MG A 408 F A 410 SITE 2 AE5 7 F A 411 HOH A 515 HOH A 549 SITE 1 AE6 8 LYS A 67 ATP A 401 MG A 405 MG A 406 SITE 2 AE6 8 MG A 407 F A 409 F A 410 F A 411 SITE 1 AE7 11 LYS A 65 GLY A 66 GLU A 81 GLU A 85 SITE 2 AE7 11 GLU A 127 ATP A 401 MG A 405 MG A 406 SITE 3 AE7 11 MG A 408 F A 410 F A 411 SITE 1 AE8 9 GLU A 81 GLU A 127 MG A 406 MG A 407 SITE 2 AE8 9 MG A 408 F A 409 F A 411 HOH A 515 SITE 3 AE8 9 HOH A 531 SITE 1 AE9 9 GLY A 66 LYS A 67 GLU A 81 ATP A 401 SITE 2 AE9 9 MG A 407 MG A 408 F A 409 F A 410 SITE 3 AE9 9 HOH A 549 SITE 1 AF1 3 HIS A 170 ARG A 186 HOH A 565 SITE 1 AF2 4 ARG A 216 GLU A 242 GLU A 243 GLN A 271 SITE 1 AF3 2 ARG A 184 ARG A 216 SITE 1 AF4 4 ARG A 296 LYS A 297 HOH A 648 HOH A 657 CRYST1 50.050 64.440 103.040 90.00 102.59 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019980 0.000000 0.004462 0.00000 SCALE2 0.000000 0.015518 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009944 0.00000