HEADER OXIDOREDUCTASE 28-MAR-17 5XDF TITLE HOMOSERINE DEHYDROGENASE FROM THERMUS THERMOPHILUS HB8 COMPLEXED WITH TITLE 2 HSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMOSERINE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS (STRAIN HB8 / ATCC 27634 / SOURCE 3 DSM 579); SOURCE 4 ORGANISM_TAXID: 300852; SOURCE 5 STRAIN: HB8 / ATCC 27634 / DSM 579; SOURCE 6 GENE: TTHA0489; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE, NAD-DEPENDENT, DEHYDROGENASE EXPDTA X-RAY DIFFRACTION AUTHOR S.AKAI,I.MIYAHARA REVDAT 3 15-NOV-23 5XDF 1 ATOM REVDAT 2 26-FEB-20 5XDF 1 REMARK REVDAT 1 26-APR-17 5XDF 0 JRNL AUTH S.AKAI,H.IKUSHIRO,D.SAWAI,H.HAYASHI,N.KAMIYA,I.MIYAHARA JRNL TITL CRYSTALLOGRAPHIC STUDY OF HOMOSERINE DEHYDROGENASE FROM JRNL TITL 2 THERMUS THERMOPHILUS HB8 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 76592 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4042 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5550 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 296 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4772 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 499 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.34000 REMARK 3 B22 (A**2) : -0.34000 REMARK 3 B33 (A**2) : 1.11000 REMARK 3 B12 (A**2) : -0.17000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.024 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4949 ; 0.024 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4818 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6751 ; 2.137 ; 2.004 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11039 ; 1.162 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 659 ; 6.668 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 187 ;35.304 ;23.048 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 728 ;12.566 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;18.648 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 782 ; 0.151 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5674 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1057 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2633 ; 3.408 ; 2.953 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2634 ; 3.407 ; 2.954 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3293 ; 4.315 ; 4.398 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3294 ; 4.315 ; 4.400 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2316 ; 4.110 ; 3.297 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2312 ; 4.108 ; 3.294 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3459 ; 5.818 ; 4.801 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5730 ; 7.283 ;24.678 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5713 ; 7.281 ;24.614 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5XDF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1300003315. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80859 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 42.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM FORMATE, CAPS PH 10.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.68000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.34000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 48.34000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 96.68000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 47 REMARK 465 LYS A 48 REMARK 465 PRO A 49 REMARK 465 PRO A 327 REMARK 465 TRP A 328 REMARK 465 PRO A 329 REMARK 465 GLY A 330 REMARK 465 VAL A 331 REMARK 465 GLU A 332 REMARK 465 PRO B 327 REMARK 465 GLU B 332 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 27 CG CD OE1 OE2 REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 ARG A 164 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 220 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 224 CG CD OE1 OE2 REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 ARG A 232 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 248 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 257 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 266 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 268 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 324 CG CD OE1 OE2 REMARK 470 GLU B 2 CG CD OE1 OE2 REMARK 470 ARG B 47 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 GLU B 60 CG CD OE1 OE2 REMARK 470 GLU B 172 CG CD OE1 OE2 REMARK 470 ARG B 220 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 224 CG CD OE1 OE2 REMARK 470 GLN B 227 CG CD OE1 NE2 REMARK 470 LYS B 228 CG CD CE NZ REMARK 470 GLU B 230 CG CD OE1 OE2 REMARK 470 ARG B 232 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 248 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 250 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 257 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 266 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 268 CG CD NE CZ NH1 NH2 REMARK 470 TRP B 328 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 328 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 37 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 175 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 275 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 58 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP B 63 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG B 175 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 LEU B 198 CB - CG - CD1 ANGL. DEV. = 11.1 DEGREES REMARK 500 ARG B 235 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 237 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 51 47.25 -90.06 REMARK 500 ALA A 73 47.52 -140.94 REMARK 500 VAL A 77 -65.28 -123.87 REMARK 500 HIS A 120 33.60 -146.66 REMARK 500 ALA A 126 -138.92 56.29 REMARK 500 ALA A 130 -56.14 -139.99 REMARK 500 LYS A 162 9.38 -68.41 REMARK 500 ARG B 50 135.19 -171.63 REMARK 500 ALA B 51 40.67 -81.19 REMARK 500 ALA B 73 46.31 -149.45 REMARK 500 VAL B 77 -61.44 -127.55 REMARK 500 HIS B 120 39.66 -144.44 REMARK 500 ALA B 126 -136.42 51.43 REMARK 500 ALA B 130 -54.94 -139.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 746 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B 747 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH B 748 DISTANCE = 6.65 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 121 O REMARK 620 2 GLU A 121 OE2 81.3 REMARK 620 3 VAL A 124 O 86.3 118.7 REMARK 620 4 ALA A 126 O 82.0 134.2 102.4 REMARK 620 5 THR A 128 O 161.2 88.2 112.4 94.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 121 O REMARK 620 2 GLU B 121 OE2 82.1 REMARK 620 3 VAL B 124 O 87.2 120.2 REMARK 620 4 ALA B 126 O 82.7 137.3 98.6 REMARK 620 5 THR B 128 O 159.1 86.2 113.7 94.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HSE A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HSE B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT B 403 DBREF 5XDF A 1 332 UNP Q5SL04 Q5SL04_THET8 1 332 DBREF 5XDF B 1 332 UNP Q5SL04 Q5SL04_THET8 1 332 SEQRES 1 A 332 MET GLU ALA LEU LYS ILE ALA LEU LEU GLY GLY GLY THR SEQRES 2 A 332 VAL GLY SER ALA PHE TYR ASN LEU VAL LEU GLU ARG ALA SEQRES 3 A 332 GLU GLU LEU SER ALA PHE GLY VAL VAL PRO ARG PHE LEU SEQRES 4 A 332 GLY VAL LEU VAL ARG ASP PRO ARG LYS PRO ARG ALA ILE SEQRES 5 A 332 PRO GLN GLU LEU LEU ARG ALA GLU PRO PHE ASP LEU LEU SEQRES 6 A 332 GLU ALA ASP LEU VAL VAL GLU ALA MET GLY GLY VAL GLU SEQRES 7 A 332 ALA PRO LEU ARG LEU VAL LEU PRO ALA LEU GLU ALA GLY SEQRES 8 A 332 ILE PRO LEU ILE THR ALA ASN LYS ALA LEU LEU ALA GLU SEQRES 9 A 332 ALA TRP GLU SER LEU ARG PRO PHE ALA GLU GLU GLY LEU SEQRES 10 A 332 ILE TYR HIS GLU ALA SER VAL MET ALA GLY THR PRO ALA SEQRES 11 A 332 LEU SER PHE LEU GLU THR LEU ARG GLY SER GLU LEU LEU SEQRES 12 A 332 GLU LEU HIS GLY ILE LEU ASN GLY THR THR LEU TYR ILE SEQRES 13 A 332 LEU GLN GLU MET GLU LYS GLY ARG THR TYR ALA GLU ALA SEQRES 14 A 332 LEU LEU GLU ALA GLN ARG LEU GLY TYR ALA GLU ALA ASP SEQRES 15 A 332 PRO THR LEU ASP VAL GLU GLY ILE ASP ALA ALA HIS LYS SEQRES 16 A 332 LEU THR LEU LEU ALA ARG LEU LEU VAL ASP PRO GLY PHE SEQRES 17 A 332 PRO PHE ALA GLU VAL GLU ALA GLN GLY ILE ALA ARG LEU SEQRES 18 A 332 THR PRO GLU VAL LEU GLN LYS ALA GLU ALA ARG GLY GLU SEQRES 19 A 332 ARG VAL ARG LEU VAL ALA SER LEU PHE GLY GLU GLY GLY SEQRES 20 A 332 ARG TRP ARG ALA ALA VAL ALA PRO ARG ARG LEU PRO GLN SEQRES 21 A 332 ASP HIS PRO LEU ALA ARG ALA ARG GLY ASN ALA LEU TRP SEQRES 22 A 332 VAL ARG ALA ARG PRO LEU GLY GLU ALA PHE VAL THR GLY SEQRES 23 A 332 PRO GLY ALA GLY GLY GLY ALA THR ALA SER GLY LEU PHE SEQRES 24 A 332 ALA ASP LEU LEU ARG PHE LEU SER GLY ALA PRO GLY HIS SEQRES 25 A 332 LEU PRO ALA PRO ARG ALA ARG PRO PRO LEU GLU GLU GLY SEQRES 26 A 332 SER PRO TRP PRO GLY VAL GLU SEQRES 1 B 332 MET GLU ALA LEU LYS ILE ALA LEU LEU GLY GLY GLY THR SEQRES 2 B 332 VAL GLY SER ALA PHE TYR ASN LEU VAL LEU GLU ARG ALA SEQRES 3 B 332 GLU GLU LEU SER ALA PHE GLY VAL VAL PRO ARG PHE LEU SEQRES 4 B 332 GLY VAL LEU VAL ARG ASP PRO ARG LYS PRO ARG ALA ILE SEQRES 5 B 332 PRO GLN GLU LEU LEU ARG ALA GLU PRO PHE ASP LEU LEU SEQRES 6 B 332 GLU ALA ASP LEU VAL VAL GLU ALA MET GLY GLY VAL GLU SEQRES 7 B 332 ALA PRO LEU ARG LEU VAL LEU PRO ALA LEU GLU ALA GLY SEQRES 8 B 332 ILE PRO LEU ILE THR ALA ASN LYS ALA LEU LEU ALA GLU SEQRES 9 B 332 ALA TRP GLU SER LEU ARG PRO PHE ALA GLU GLU GLY LEU SEQRES 10 B 332 ILE TYR HIS GLU ALA SER VAL MET ALA GLY THR PRO ALA SEQRES 11 B 332 LEU SER PHE LEU GLU THR LEU ARG GLY SER GLU LEU LEU SEQRES 12 B 332 GLU LEU HIS GLY ILE LEU ASN GLY THR THR LEU TYR ILE SEQRES 13 B 332 LEU GLN GLU MET GLU LYS GLY ARG THR TYR ALA GLU ALA SEQRES 14 B 332 LEU LEU GLU ALA GLN ARG LEU GLY TYR ALA GLU ALA ASP SEQRES 15 B 332 PRO THR LEU ASP VAL GLU GLY ILE ASP ALA ALA HIS LYS SEQRES 16 B 332 LEU THR LEU LEU ALA ARG LEU LEU VAL ASP PRO GLY PHE SEQRES 17 B 332 PRO PHE ALA GLU VAL GLU ALA GLN GLY ILE ALA ARG LEU SEQRES 18 B 332 THR PRO GLU VAL LEU GLN LYS ALA GLU ALA ARG GLY GLU SEQRES 19 B 332 ARG VAL ARG LEU VAL ALA SER LEU PHE GLY GLU GLY GLY SEQRES 20 B 332 ARG TRP ARG ALA ALA VAL ALA PRO ARG ARG LEU PRO GLN SEQRES 21 B 332 ASP HIS PRO LEU ALA ARG ALA ARG GLY ASN ALA LEU TRP SEQRES 22 B 332 VAL ARG ALA ARG PRO LEU GLY GLU ALA PHE VAL THR GLY SEQRES 23 B 332 PRO GLY ALA GLY GLY GLY ALA THR ALA SER GLY LEU PHE SEQRES 24 B 332 ALA ASP LEU LEU ARG PHE LEU SER GLY ALA PRO GLY HIS SEQRES 25 B 332 LEU PRO ALA PRO ARG ALA ARG PRO PRO LEU GLU GLU GLY SEQRES 26 B 332 SER PRO TRP PRO GLY VAL GLU HET HSE A1301 8 HET NA A1302 1 HET FMT A1303 3 HET HSE B 401 8 HET NA B 402 1 HET FMT B 403 3 HETNAM HSE L-HOMOSERINE HETNAM NA SODIUM ION HETNAM FMT FORMIC ACID FORMUL 3 HSE 2(C4 H9 N O3) FORMUL 4 NA 2(NA 1+) FORMUL 5 FMT 2(C H2 O2) FORMUL 9 HOH *499(H2 O) HELIX 1 AA1 GLY A 12 ARG A 25 1 14 HELIX 2 AA2 ARG A 25 ALA A 31 1 7 HELIX 3 AA3 PRO A 53 GLU A 55 5 3 HELIX 4 AA4 VAL A 77 ALA A 90 1 14 HELIX 5 AA5 ASN A 98 ALA A 105 1 8 HELIX 6 AA6 ALA A 105 GLU A 115 1 11 HELIX 7 AA7 HIS A 120 VAL A 124 5 5 HELIX 8 AA8 ALA A 130 ARG A 138 1 9 HELIX 9 AA9 ASN A 150 LYS A 162 1 13 HELIX 10 AB1 THR A 165 LEU A 176 1 12 HELIX 11 AB2 PRO A 183 GLU A 188 1 6 HELIX 12 AB3 GLY A 189 VAL A 204 1 16 HELIX 13 AB4 PRO A 209 VAL A 213 5 5 HELIX 14 AB5 THR A 222 ARG A 232 1 11 HELIX 15 AB6 HIS A 262 ALA A 267 1 6 HELIX 16 AB7 GLY A 290 SER A 307 1 18 HELIX 17 AB8 GLY B 12 ARG B 25 1 14 HELIX 18 AB9 ARG B 25 ALA B 31 1 7 HELIX 19 AC1 PRO B 53 GLU B 55 5 3 HELIX 20 AC2 VAL B 77 ALA B 90 1 14 HELIX 21 AC3 ASN B 98 ALA B 105 1 8 HELIX 22 AC4 ALA B 105 GLU B 115 1 11 HELIX 23 AC5 HIS B 120 VAL B 124 5 5 HELIX 24 AC6 ALA B 130 ARG B 138 1 9 HELIX 25 AC7 ASN B 150 LYS B 162 1 13 HELIX 26 AC8 THR B 165 LEU B 176 1 12 HELIX 27 AC9 PRO B 183 GLU B 188 1 6 HELIX 28 AD1 GLY B 189 VAL B 204 1 16 HELIX 29 AD2 PRO B 209 VAL B 213 5 5 HELIX 30 AD3 THR B 222 ARG B 232 1 11 HELIX 31 AD4 HIS B 262 ALA B 267 1 6 HELIX 32 AD5 GLY B 290 GLY B 308 1 19 SHEET 1 AA1 6 LEU A 57 ARG A 58 0 SHEET 2 AA1 6 VAL A 34 LEU A 42 1 N VAL A 41 O ARG A 58 SHEET 3 AA1 6 GLU A 2 LEU A 9 1 N LEU A 4 O VAL A 35 SHEET 4 AA1 6 LEU A 69 GLU A 72 1 O VAL A 71 N LEU A 9 SHEET 5 AA1 6 LEU A 94 THR A 96 1 O ILE A 95 N VAL A 70 SHEET 6 AA1 6 ILE A 118 TYR A 119 1 O TYR A 119 N LEU A 94 SHEET 1 AA212 GLU A 214 ALA A 215 0 SHEET 2 AA212 ARG A 248 PRO A 259 1 O VAL A 253 N GLU A 214 SHEET 3 AA212 GLU A 234 GLU A 245 -1 N PHE A 243 O ARG A 250 SHEET 4 AA212 GLU A 141 ILE A 148 -1 N GLY A 147 O ALA A 240 SHEET 5 AA212 ASN A 270 ARG A 277 -1 O TRP A 273 N HIS A 146 SHEET 6 AA212 GLY A 280 GLY A 286 -1 O ALA A 282 N VAL A 274 SHEET 7 AA212 GLY B 280 GLY B 286 -1 O PHE B 283 N THR A 285 SHEET 8 AA212 ASN B 270 ARG B 277 -1 N VAL B 274 O ALA B 282 SHEET 9 AA212 GLU B 141 ILE B 148 -1 N ILE B 148 O ALA B 271 SHEET 10 AA212 GLU B 234 GLU B 245 -1 O ALA B 240 N GLY B 147 SHEET 11 AA212 ARG B 248 PRO B 259 -1 O ALA B 252 N SER B 241 SHEET 12 AA212 GLU B 214 ALA B 215 1 N GLU B 214 O VAL B 253 SHEET 1 AA3 6 LEU B 57 ARG B 58 0 SHEET 2 AA3 6 VAL B 34 LEU B 42 1 N VAL B 41 O ARG B 58 SHEET 3 AA3 6 GLU B 2 LEU B 9 1 N LEU B 4 O ARG B 37 SHEET 4 AA3 6 LEU B 69 GLU B 72 1 O VAL B 71 N LEU B 9 SHEET 5 AA3 6 LEU B 94 THR B 96 1 O ILE B 95 N GLU B 72 SHEET 6 AA3 6 ILE B 118 TYR B 119 1 O TYR B 119 N LEU B 94 LINK O GLU A 121 NA NA A1302 1555 1555 2.40 LINK OE2 GLU A 121 NA NA A1302 1555 1555 2.37 LINK O VAL A 124 NA NA A1302 1555 1555 2.34 LINK O ALA A 126 NA NA A1302 1555 1555 2.30 LINK O THR A 128 NA NA A1302 1555 1555 2.37 LINK O GLU B 121 NA NA B 402 1555 1555 2.36 LINK OE2 GLU B 121 NA NA B 402 1555 1555 2.40 LINK O VAL B 124 NA NA B 402 1555 1555 2.22 LINK O ALA B 126 NA NA B 402 1555 1555 2.34 LINK O THR B 128 NA NA B 402 1555 1555 2.41 CISPEP 1 ARG A 277 PRO A 278 0 6.24 CISPEP 2 ARG B 277 PRO B 278 0 1.66 SITE 1 AC1 12 LYS A 99 ASN A 150 GLY A 151 THR A 152 SITE 2 AC1 12 TYR A 178 GLU A 180 ASP A 186 ASP A 191 SITE 3 AC1 12 LYS A 195 GLY A 288 HOH A1474 HOH A1555 SITE 1 AC2 4 GLU A 121 VAL A 124 ALA A 126 THR A 128 SITE 1 AC3 6 GLY A 11 GLY A 12 VAL A 43 ARG A 44 SITE 2 AC3 6 ASP A 45 ARG A 50 SITE 1 AC4 11 LYS B 99 ASN B 150 GLY B 151 THR B 152 SITE 2 AC4 11 TYR B 178 GLU B 180 ASP B 186 LYS B 195 SITE 3 AC4 11 GLY B 288 HOH B 503 HOH B 643 SITE 1 AC5 4 GLU B 121 VAL B 124 ALA B 126 THR B 128 SITE 1 AC6 7 GLY B 10 GLY B 11 GLY B 12 VAL B 43 SITE 2 AC6 7 ARG B 44 HOH B 515 HOH B 531 CRYST1 119.625 119.625 145.020 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008359 0.004826 0.000000 0.00000 SCALE2 0.000000 0.009653 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006896 0.00000