HEADER LIGASE 06-APR-17 5XET TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS METHIONYL-TRNA TITLE 2 SYNTHETASE BOUND BY METHIONYL-ADENYLATE (MET-AMP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE--TRNA LIGASE; COMPND 3 CHAIN: C; COMPND 4 SYNONYM: METHIONYL-TRNA SYNTHETASE,METRS; COMPND 5 EC: 6.1.1.10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RA; SOURCE 3 ORGANISM_TAXID: 419947; SOURCE 4 STRAIN: ATCC 25177 / H37RA; SOURCE 5 GENE: METG, MRA_1016; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3)PLYSS AG KEYWDS SYNTHETASE, AMINOACYL-TRNA SYNTHETASE, COMPLEX, ATP, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR W.WANG,B.QIN,J.A.WOJDYLA,M.WANG,X.GAO,S.CUI REVDAT 3 22-NOV-23 5XET 1 REMARK REVDAT 2 01-AUG-18 5XET 1 JRNL REVDAT 1 11-JUL-18 5XET 0 JRNL AUTH W.WANG,B.QIN,J.A.WOJDYLA,M.WANG,X.GAO,S.CUI JRNL TITL STRUCTURAL CHARACTERIZATION OF FREE-STATE AND JRNL TITL 2 PRODUCT-STATEMYCOBACTERIUM TUBERCULOSISMETHIONYL-TRNA JRNL TITL 3 SYNTHETASE REVEALS AN INDUCED-FIT LIGAND-RECOGNITION JRNL TITL 4 MECHANISM. JRNL REF IUCRJ V. 5 478 2018 JRNL REFN ESSN 2052-2525 JRNL PMID 30002848 JRNL DOI 10.1107/S2052252518008217 REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 22866 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1164 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.4263 - 4.7572 0.99 2683 160 0.1694 0.1996 REMARK 3 2 4.7572 - 3.7771 0.99 2710 136 0.1561 0.1853 REMARK 3 3 3.7771 - 3.3000 0.99 2709 129 0.1940 0.3045 REMARK 3 4 3.3000 - 2.9984 1.00 2701 149 0.2228 0.2775 REMARK 3 5 2.9984 - 2.7835 1.00 2716 151 0.2355 0.2990 REMARK 3 6 2.7835 - 2.6195 1.00 2698 158 0.2460 0.2699 REMARK 3 7 2.6195 - 2.4883 1.00 2776 121 0.2630 0.3433 REMARK 3 8 2.4883 - 2.3800 1.00 2709 160 0.2738 0.3139 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4134 REMARK 3 ANGLE : 0.804 5631 REMARK 3 CHIRALITY : 0.044 616 REMARK 3 PLANARITY : 0.005 733 REMARK 3 DIHEDRAL : 13.456 2422 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE FACTOR FILE CONTAINS REMARK 3 FRIEDEL PAIRS IN F_PLUS/MINUS AND I_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 5XET COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1300002203. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977760 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49191 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 37.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.15600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.7700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.13 REMARK 200 R MERGE FOR SHELL (I) : 0.58500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.610 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2X1L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM SULFATE MONOHYDRATE, 19% REMARK 280 PEG 3350, BIS TRIS, PH 6.9, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 99.00850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 57.16258 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 13.05367 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 99.00850 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 57.16258 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.05367 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 99.00850 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 57.16258 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.05367 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 114.32517 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 26.10733 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 114.32517 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 26.10733 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 114.32517 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 26.10733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -7 REMARK 465 GLY C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 HIS C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 GLY C 297 REMARK 465 GLU C 298 REMARK 465 ARG C 509 REMARK 465 TYR C 510 REMARK 465 GLN C 511 REMARK 465 PRO C 512 REMARK 465 PRO C 513 REMARK 465 GLN C 514 REMARK 465 PRO C 515 REMARK 465 PRO C 516 REMARK 465 GLU C 517 REMARK 465 GLY C 518 REMARK 465 LYS C 519 REMARK 465 ARG C 520 REMARK 465 SER C 521 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ALA C 385 O HOH C 702 1.39 REMARK 500 HH21 ARG C 109 O HOH C 707 1.55 REMARK 500 HE ARG C 108 O HOH C 725 1.58 REMARK 500 OE1 GLU C 50 HG1 THR C 95 1.60 REMARK 500 O LYS C 2 H ASP C 41 1.60 REMARK 500 O ARG C 251 O HOH C 701 1.81 REMARK 500 N ALA C 385 O HOH C 702 1.93 REMARK 500 O ALA C 381 O HOH C 702 1.93 REMARK 500 O PRO C 501 O HOH C 703 1.95 REMARK 500 O HOH C 751 O HOH C 855 1.95 REMARK 500 OD2 ASP C 309 O HOH C 704 1.96 REMARK 500 O LEU C 500 O HOH C 705 1.98 REMARK 500 O LEU C 363 O HOH C 706 2.01 REMARK 500 O HOH C 841 O HOH C 865 2.02 REMARK 500 NH2 ARG C 109 O HOH C 707 2.03 REMARK 500 N SER C 301 O HOH C 708 2.06 REMARK 500 OD1 ASP C 222 O HOH C 709 2.12 REMARK 500 O PRO C 242 O HOH C 710 2.14 REMARK 500 O HOH C 779 O HOH C 858 2.15 REMARK 500 O HOH C 748 O HOH C 806 2.17 REMARK 500 NH1 ARG C 131 O HOH C 711 2.18 REMARK 500 O ASP C 142 O HOH C 712 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 832 O HOH C 847 1556 2.03 REMARK 500 O HOH C 845 O HOH C 852 1554 2.06 REMARK 500 O HOH C 843 O HOH C 872 2555 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO C 13 45.41 -80.29 REMARK 500 SER C 87 44.62 -83.72 REMARK 500 GLU C 130 39.97 74.04 REMARK 500 GLU C 137 38.19 -81.71 REMARK 500 HIS C 220 68.48 -155.00 REMARK 500 TYR C 226 126.83 -35.01 REMARK 500 VAL C 270 -58.10 -121.21 REMARK 500 LEU C 317 -5.95 -140.87 REMARK 500 ASN C 353 -69.16 -94.16 REMARK 500 ALA C 406 58.95 -108.79 REMARK 500 GLN C 429 57.89 38.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 880 DISTANCE = 6.44 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 605 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR C 23 OH REMARK 620 2 LEU C 326 O 109.0 REMARK 620 3 VAL C 330 O 112.8 103.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 606 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 751 O REMARK 620 2 HOH C 855 O 54.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ME8 C 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 607 DBREF 5XET C 1 519 UNP A5U150 A5U150_MYCTA 1 519 SEQADV 5XET MET C -7 UNP A5U150 EXPRESSION TAG SEQADV 5XET GLY C -6 UNP A5U150 EXPRESSION TAG SEQADV 5XET HIS C -5 UNP A5U150 EXPRESSION TAG SEQADV 5XET HIS C -4 UNP A5U150 EXPRESSION TAG SEQADV 5XET HIS C -3 UNP A5U150 EXPRESSION TAG SEQADV 5XET HIS C -2 UNP A5U150 EXPRESSION TAG SEQADV 5XET HIS C -1 UNP A5U150 EXPRESSION TAG SEQADV 5XET HIS C 0 UNP A5U150 EXPRESSION TAG SEQADV 5XET ARG C 520 UNP A5U150 EXPRESSION TAG SEQADV 5XET SER C 521 UNP A5U150 EXPRESSION TAG SEQRES 1 C 529 MET GLY HIS HIS HIS HIS HIS HIS MET LYS PRO TYR TYR SEQRES 2 C 529 VAL THR THR ALA ILE ALA TYR PRO ASN ALA ALA PRO HIS SEQRES 3 C 529 VAL GLY HIS ALA TYR GLU TYR ILE ALA THR ASP ALA ILE SEQRES 4 C 529 ALA ARG PHE LYS ARG LEU ASP ARG TYR ASP VAL ARG PHE SEQRES 5 C 529 LEU THR GLY THR ASP GLU HIS GLY LEU LYS VAL ALA GLN SEQRES 6 C 529 ALA ALA ALA ALA ALA GLY VAL PRO THR ALA ALA LEU ALA SEQRES 7 C 529 ARG ARG ASN SER ASP VAL PHE GLN ARG MET GLN GLU ALA SEQRES 8 C 529 LEU ASN ILE SER PHE ASP ARG PHE ILE ARG THR THR ASP SEQRES 9 C 529 ALA ASP HIS HIS GLU ALA SER LYS GLU LEU TRP ARG ARG SEQRES 10 C 529 MET SER ALA ALA GLY ASP ILE TYR LEU ASP ASN TYR SER SEQRES 11 C 529 GLY TRP TYR SER VAL ARG ASP GLU ARG PHE PHE VAL GLU SEQRES 12 C 529 SER GLU THR GLN LEU VAL ASP GLY THR ARG LEU THR VAL SEQRES 13 C 529 GLU THR GLY THR PRO VAL THR TRP THR GLU GLU GLN THR SEQRES 14 C 529 TYR PHE PHE ARG LEU SER ALA TYR THR ASP LYS LEU LEU SEQRES 15 C 529 ALA HIS TYR HIS ALA ASN PRO ASP PHE ILE ALA PRO GLU SEQRES 16 C 529 THR ARG ARG ASN GLU VAL ILE SER PHE VAL SER GLY GLY SEQRES 17 C 529 LEU ASP ASP LEU SER ILE SER ARG THR SER PHE ASP TRP SEQRES 18 C 529 GLY VAL GLN VAL PRO GLU HIS PRO ASP HIS VAL MET TYR SEQRES 19 C 529 VAL TRP VAL ASP ALA LEU THR ASN TYR LEU THR GLY ALA SEQRES 20 C 529 GLY PHE PRO ASP THR ASP SER GLU LEU PHE ARG ARG TYR SEQRES 21 C 529 TRP PRO ALA ASP LEU HIS MET ILE GLY LYS ASP ILE ILE SEQRES 22 C 529 ARG PHE HIS ALA VAL TYR TRP PRO ALA PHE LEU MET SER SEQRES 23 C 529 ALA GLY ILE GLU LEU PRO ARG ARG ILE PHE ALA HIS GLY SEQRES 24 C 529 PHE LEU HIS ASN ARG GLY GLU LYS MET SER LYS SER VAL SEQRES 25 C 529 GLY ASN ILE VAL ASP PRO VAL ALA LEU ALA GLU ALA LEU SEQRES 26 C 529 GLY VAL ASP GLN VAL ARG TYR PHE LEU LEU ARG GLU VAL SEQRES 27 C 529 PRO PHE GLY GLN ASP GLY SER TYR SER ASP GLU ALA ILE SEQRES 28 C 529 VAL THR ARG ILE ASN THR ASP LEU ALA ASN GLU LEU GLY SEQRES 29 C 529 ASN LEU ALA GLN ARG SER LEU SER MET VAL ALA LYS ASN SEQRES 30 C 529 LEU ASP GLY ARG VAL PRO ASN PRO GLY GLU PHE ALA ASP SEQRES 31 C 529 ALA ASP ALA ALA LEU LEU ALA THR ALA ASP GLY LEU LEU SEQRES 32 C 529 GLU ARG VAL ARG GLY HIS PHE ASP ALA GLN ALA MET HIS SEQRES 33 C 529 LEU ALA LEU GLU ALA ILE TRP LEU MET LEU GLY ASP ALA SEQRES 34 C 529 ASN LYS TYR PHE SER VAL GLN GLN PRO TRP VAL LEU ARG SEQRES 35 C 529 LYS SER GLU SER GLU ALA ASP GLN ALA ARG PHE ARG THR SEQRES 36 C 529 THR LEU TYR VAL THR CYS GLU VAL VAL ARG ILE ALA ALA SEQRES 37 C 529 LEU LEU ILE GLN PRO VAL MET PRO GLU SER ALA GLY LYS SEQRES 38 C 529 ILE LEU ASP LEU LEU GLY GLN ALA PRO ASN GLN ARG SER SEQRES 39 C 529 PHE ALA ALA VAL GLY VAL ARG LEU THR PRO GLY THR ALA SEQRES 40 C 529 LEU PRO PRO PRO THR GLY VAL PHE PRO ARG TYR GLN PRO SEQRES 41 C 529 PRO GLN PRO PRO GLU GLY LYS ARG SER HET ME8 C 601 53 HET EDO C 602 10 HET MG C 603 1 HET MG C 604 1 HET MG C 605 1 HET MG C 606 1 HET MG C 607 1 HETNAM ME8 [[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY- HETNAM 2 ME8 OXOLAN-2-YL]METHOXY-HYDROXY-PHOSPHORYL] (2S)-2-AZANYL- HETNAM 3 ME8 4-METHYLSULFANYL-BUTANOATE HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETSYN ME8 L-METHIONINE-AMP; METHIONYL-ADENYLATE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ME8 C15 H23 N6 O8 P S FORMUL 3 EDO C2 H6 O2 FORMUL 4 MG 5(MG 2+) FORMUL 9 HOH *180(H2 O) HELIX 1 AA1 HIS C 18 ASP C 38 1 21 HELIX 2 AA2 GLY C 52 ALA C 60 1 9 HELIX 3 AA3 PRO C 65 LEU C 84 1 20 HELIX 4 AA4 ASP C 96 ALA C 113 1 18 HELIX 5 AA5 VAL C 134 SER C 136 5 3 HELIX 6 AA6 LEU C 166 ALA C 168 5 3 HELIX 7 AA7 TYR C 169 ASN C 180 1 12 HELIX 8 AA8 PRO C 186 GLY C 199 1 14 HELIX 9 AA9 TYR C 226 THR C 233 1 8 HELIX 10 AB1 THR C 233 GLY C 238 1 6 HELIX 11 AB2 SER C 246 TRP C 253 1 8 HELIX 12 AB3 ILE C 264 VAL C 270 1 7 HELIX 13 AB4 VAL C 270 ALA C 279 1 10 HELIX 14 AB5 ASP C 309 GLY C 318 1 10 HELIX 15 AB6 GLY C 318 VAL C 330 1 13 HELIX 16 AB7 SER C 339 LEU C 351 1 13 HELIX 17 AB8 LEU C 355 LEU C 370 1 16 HELIX 18 AB9 ALA C 381 GLY C 393 1 13 HELIX 19 AC1 GLY C 393 ALA C 404 1 12 HELIX 20 AC2 ALA C 406 GLN C 429 1 24 HELIX 21 AC3 GLN C 429 ARG C 434 1 6 HELIX 22 AC4 SER C 438 GLN C 464 1 27 HELIX 23 AC5 MET C 467 LEU C 478 1 12 HELIX 24 AC6 ALA C 481 ARG C 485 5 5 HELIX 25 AC7 SER C 486 VAL C 492 5 7 SHEET 1 AA1 6 ARG C 90 ARG C 93 0 SHEET 2 AA1 6 ASP C 41 THR C 48 1 N THR C 46 O ILE C 92 SHEET 3 AA1 6 PRO C 3 THR C 8 1 N TYR C 4 O ASP C 41 SHEET 4 AA1 6 LEU C 257 GLY C 261 1 O MET C 259 N THR C 7 SHEET 5 AA1 6 ILE C 287 HIS C 290 1 O HIS C 290 N ILE C 260 SHEET 6 AA1 6 ILE C 184 ALA C 185 1 N ALA C 185 O ALA C 289 SHEET 1 AA2 4 ARG C 131 PHE C 133 0 SHEET 2 AA2 4 ILE C 116 SER C 126 -1 N TRP C 124 O PHE C 133 SHEET 3 AA2 4 THR C 155 PHE C 164 -1 O GLU C 159 N TYR C 121 SHEET 4 AA2 4 LEU C 204 SER C 205 -1 O LEU C 204 N PHE C 164 SHEET 1 AA3 2 THR C 138 VAL C 141 0 SHEET 2 AA3 2 THR C 144 THR C 147 -1 O THR C 144 N VAL C 141 SHEET 1 AA4 2 SER C 207 ARG C 208 0 SHEET 2 AA4 2 VAL C 224 MET C 225 -1 O VAL C 224 N ARG C 208 SHEET 1 AA5 2 LEU C 293 ASN C 295 0 SHEET 2 AA5 2 GLY C 336 TYR C 338 1 O TYR C 338 N HIS C 294 LINK OH TYR C 23 MG MG C 605 1555 1555 2.39 LINK OG SER C 301 MG MG C 603 1555 1555 1.78 LINK O LEU C 326 MG MG C 605 1555 1555 2.94 LINK O VAL C 330 MG MG C 605 1555 1555 2.64 LINK MG MG C 604 O HOH C 788 1555 1555 1.88 LINK MG MG C 606 O HOH C 751 1555 1555 2.14 LINK MG MG C 606 O HOH C 855 1555 1555 2.13 CISPEP 1 ALA C 185 PRO C 186 0 3.06 CISPEP 2 PHE C 241 PRO C 242 0 8.10 CISPEP 3 TRP C 253 PRO C 254 0 6.28 SITE 1 AC1 22 ALA C 9 ILE C 10 ALA C 11 TYR C 12 SITE 2 AC1 22 HIS C 18 GLY C 20 HIS C 21 GLU C 24 SITE 3 AC1 22 ASP C 49 TRP C 228 ALA C 231 TYR C 235 SITE 4 AC1 22 GLY C 261 ASP C 263 ILE C 264 HIS C 290 SITE 5 AC1 22 GLY C 291 PHE C 292 LEU C 293 HOH C 721 SITE 6 AC1 22 HOH C 762 HOH C 811 SITE 1 AC2 4 ARG C 33 ASN C 85 HOH C 789 HOH C 816 SITE 1 AC3 3 VAL C 19 SER C 301 VAL C 308 SITE 1 AC4 2 ARG C 397 HOH C 788 SITE 1 AC5 4 TYR C 23 LEU C 326 VAL C 330 PHE C 332 SITE 1 AC6 3 ARG C 328 HOH C 751 HOH C 855 SITE 1 AC7 1 ARG C 446 CRYST1 198.017 198.017 39.161 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005050 0.002916 0.000000 0.00000 SCALE2 0.000000 0.005831 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025536 0.00000