data_5XEW
#
_entry.id 5XEW
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.387
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 5XEW pdb_00005xew 10.2210/pdb5xew/pdb
WWPDB D_1300003408 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2017-06-21
2 'Structure model' 1 1 2017-06-28
3 'Structure model' 1 2 2017-07-19
4 'Structure model' 1 3 2018-05-16
5 'Structure model' 2 0 2020-07-29
6 'Structure model' 2 1 2024-03-27
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Database references'
3 4 'Structure model' 'Data collection'
4 4 'Structure model' 'Database references'
5 5 'Structure model' 'Atomic model'
6 5 'Structure model' 'Data collection'
7 5 'Structure model' 'Derived calculations'
8 5 'Structure model' 'Structure summary'
9 6 'Structure model' 'Data collection'
10 6 'Structure model' 'Database references'
11 6 'Structure model' 'Derived calculations'
12 6 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' citation
2 3 'Structure model' citation
3 4 'Structure model' diffrn_source
4 4 'Structure model' struct_ref_seq
5 5 'Structure model' atom_site
6 5 'Structure model' chem_comp
7 5 'Structure model' entity
8 5 'Structure model' pdbx_branch_scheme
9 5 'Structure model' pdbx_chem_comp_identifier
10 5 'Structure model' pdbx_entity_branch
11 5 'Structure model' pdbx_entity_branch_descriptor
12 5 'Structure model' pdbx_entity_branch_link
13 5 'Structure model' pdbx_entity_branch_list
14 5 'Structure model' pdbx_entity_nonpoly
15 5 'Structure model' pdbx_nonpoly_scheme
16 5 'Structure model' pdbx_struct_assembly_gen
17 5 'Structure model' pdbx_struct_conn_angle
18 5 'Structure model' pdbx_struct_special_symmetry
19 5 'Structure model' struct_asym
20 5 'Structure model' struct_conn
21 5 'Structure model' struct_conn_type
22 5 'Structure model' struct_site
23 5 'Structure model' struct_site_gen
24 6 'Structure model' chem_comp
25 6 'Structure model' chem_comp_atom
26 6 'Structure model' chem_comp_bond
27 6 'Structure model' database_2
28 6 'Structure model' struct_conn
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_citation.country'
2 2 'Structure model' '_citation.journal_id_ASTM'
3 2 'Structure model' '_citation.journal_id_CSD'
4 2 'Structure model' '_citation.title'
5 3 'Structure model' '_citation.journal_volume'
6 3 'Structure model' '_citation.page_first'
7 3 'Structure model' '_citation.page_last'
8 4 'Structure model' '_diffrn_source.pdbx_synchrotron_beamline'
9 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site'
10 4 'Structure model' '_struct_ref_seq.db_align_end'
11 5 'Structure model' '_atom_site.B_iso_or_equiv'
12 5 'Structure model' '_atom_site.Cartn_x'
13 5 'Structure model' '_atom_site.Cartn_y'
14 5 'Structure model' '_atom_site.Cartn_z'
15 5 'Structure model' '_atom_site.auth_asym_id'
16 5 'Structure model' '_atom_site.auth_atom_id'
17 5 'Structure model' '_atom_site.auth_comp_id'
18 5 'Structure model' '_atom_site.auth_seq_id'
19 5 'Structure model' '_atom_site.label_asym_id'
20 5 'Structure model' '_atom_site.label_atom_id'
21 5 'Structure model' '_atom_site.label_comp_id'
22 5 'Structure model' '_atom_site.label_entity_id'
23 5 'Structure model' '_atom_site.type_symbol'
24 5 'Structure model' '_chem_comp.mon_nstd_flag'
25 5 'Structure model' '_chem_comp.name'
26 5 'Structure model' '_chem_comp.type'
27 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list'
28 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id'
29 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'
30 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'
31 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id'
32 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id'
33 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id'
34 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id'
35 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id'
36 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id'
37 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id'
38 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'
39 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'
40 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id'
41 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id'
42 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id'
43 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id'
44 5 'Structure model' '_pdbx_struct_conn_angle.value'
45 5 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id'
46 5 'Structure model' '_struct_conn.conn_type_id'
47 5 'Structure model' '_struct_conn.id'
48 5 'Structure model' '_struct_conn.pdbx_dist_value'
49 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
50 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
51 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
52 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
53 5 'Structure model' '_struct_conn.ptnr1_label_asym_id'
54 5 'Structure model' '_struct_conn.ptnr1_label_atom_id'
55 5 'Structure model' '_struct_conn.ptnr1_label_comp_id'
56 5 'Structure model' '_struct_conn.ptnr1_label_seq_id'
57 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
58 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
59 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
60 5 'Structure model' '_struct_conn.ptnr2_label_asym_id'
61 5 'Structure model' '_struct_conn.ptnr2_label_atom_id'
62 5 'Structure model' '_struct_conn.ptnr2_label_comp_id'
63 5 'Structure model' '_struct_conn_type.id'
64 6 'Structure model' '_chem_comp.pdbx_synonyms'
65 6 'Structure model' '_database_2.pdbx_DOI'
66 6 'Structure model' '_database_2.pdbx_database_accession'
67 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
#
_pdbx_database_PDB_obs_spr.id SPRSDE
_pdbx_database_PDB_obs_spr.date 2017-06-21
_pdbx_database_PDB_obs_spr.pdb_id 5XEW
_pdbx_database_PDB_obs_spr.replace_pdb_id 5ERZ
_pdbx_database_PDB_obs_spr.details ?
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 5XEW
_pdbx_database_status.recvd_initial_deposition_date 2017-04-06
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site PDBJ
_pdbx_database_status.process_site PDBJ
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.details
_pdbx_database_related.db_id
_pdbx_database_related.content_type
PDB . 5ERZ unspecified
PDB . 5ES0 unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Tseng, W.H.' 1 ?
'Wu, P.C.' 2 ?
'Hou, M.H.' 3 ?
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country GE
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev 'Angew. Chem. Int. Ed. Engl.'
_citation.journal_id_ASTM ACIEAY
_citation.journal_id_CSD 0179
_citation.journal_id_ISSN 1521-3773
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 56
_citation.language ?
_citation.page_first 8761
_citation.page_last 8765
_citation.title
'Induced-Fit Recognition of CCG Trinucleotide Repeats by a Nickel-Chromomycin Complex Resulting in Large-Scale DNA Deformation'
_citation.year 2017
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1002/anie.201703989
_citation.pdbx_database_id_PubMed 28544401
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Tseng, W.H.' 1 ?
primary 'Chang, C.K.' 2 ?
primary 'Wu, P.C.' 3 ?
primary 'Hu, N.J.' 4 ?
primary 'Lee, G.H.' 5 ?
primary 'Tzeng, C.C.' 6 ?
primary 'Neidle, S.' 7 ?
primary 'Hou, M.H.' 8 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn
;DNA (5'-D(*TP*TP*CP*CP*GP*CP*CP*GP*CP*CP*GP*AP*A)-3')
;
3912.550 2 ? ? ? ?
2 branched man
;3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose-(1-3)-(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol-(1-3)-(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol
;
432.506 2 ? ? ? ?
3 branched man
'2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose-(1-3)-(2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetate' 318.363 2 ?
? ? ?
4 non-polymer syn
'(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' 420.410
2 ? ? ? ?
5 non-polymer syn 'NICKEL (II) ION' 58.693 3 ? ? ? ?
6 water nat water 18.015 89 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type polydeoxyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code '(DT)(DT)(DC)(DC)(DG)(DC)(DC)(DG)(DC)(DC)(DG)(DA)(DA)'
_entity_poly.pdbx_seq_one_letter_code_can TTCCGCCGCCGAA
_entity_poly.pdbx_strand_id A,B
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
4 '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' CPH
5 'NICKEL (II) ION' NI
6 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 DT n
1 2 DT n
1 3 DC n
1 4 DC n
1 5 DG n
1 6 DC n
1 7 DC n
1 8 DG n
1 9 DC n
1 10 DC n
1 11 DG n
1 12 DA n
1 13 DA n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 13
_pdbx_entity_src_syn.organism_scientific 'synthetic construct'
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id 32630
_pdbx_entity_src_syn.details ?
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
2 oligosaccharide
3 oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 2 'WURCS=2.0/2,3,2/[ad222m-1b_1-5][ad611m-1a_1-5_3*C_4*OCC/3=O]/1-1-2/a3-b1_b3-c1' WURCS PDB2Glycan 1.1.0
2 2 '[][b-D-2,6-deoxy-Glcp]{[(3+1)][b-D-2,6-deoxy-Glcp]{[(3+1)][a-L-2,6-deoxy-Glcp4Ac]{}}}' LINUCS PDB-CARE ?
3 3 'WURCS=2.0/2,2,1/[ad212m-1b_1-5_4*OCC/3=O][ad112m-1a_1-5_4*OC]/1-2/a3-b1' WURCS PDB2Glycan 1.1.0
4 3 '[][b-D-2-deoxy-Fucp4Ac]{[(3+1)][a-D-2-deoxy-Fucp4Me]{}}' LINUCS PDB-CARE ?
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.value_order
_pdbx_entity_branch_link.details
1 2 1 CDR C3 H3 2 CDR O1 HO1 sing ?
2 2 2 CDR C3 H3 3 ERI O1 HO1 sing ?
3 3 1 ARI C3 H3 2 1GL O1 HO1 sing ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
1GL 'D-saccharide, alpha linking' . 2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose
;4-O-METHYL-2,6-DIDEOXY-ALPHA-D-GALACTO-HEXOPYRANOSE; 2-deoxy-4-O-methyl-alpha-D-fucopyranose; 2,6-dideoxy-4-O-methyl-alpha-D-galactose; 2,6-dideoxy-4-O-methyl-D-galactose; 2,6-dideoxy-4-O-methyl-galactose
;
'C7 H14 O4' 162.184
ARI 'D-saccharide, beta linking' . '(2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetate'
'[O4]-ACETOXY-2,3-DIDEOXYFUCOSE' 'C8 H14 O4' 174.194
CDR 'D-saccharide, beta linking' . '(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol' 2,3-DIDEOXYFUCOSE 'C6 H12 O3' 132.158
CPH non-polymer .
'(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' None
'C21 H24 O9' 420.410
DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222
DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197
DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208
ERI 'L-saccharide, alpha linking' n 3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose
;4-O-ACETYL-2,6-DIDEOXY-3-C-METHYL-BETA-L-ARABINO-HEXOPYRANOSE; 3-C-methyl-4-O-acetyl-alpha-L-Olivose; 3-C-methyl-4-O-acetyl-L-Olivose; 3-C-methyl-4-O-acetyl-Olivose
;
'C9 H16 O5' 204.220
HOH non-polymer . WATER ? 'H2 O' 18.015
NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693
#
_pdbx_chem_comp_identifier.comp_id 1GL
_pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL'
_pdbx_chem_comp_identifier.program PDB-CARE
_pdbx_chem_comp_identifier.program_version 1.0
_pdbx_chem_comp_identifier.identifier a-D-2-deoxy-Fucp4OMe
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 DT 1 1 1 DT Td A . n
A 1 2 DT 2 2 2 DT Td A . n
A 1 3 DC 3 3 ? ? ? A . n
A 1 4 DC 4 4 4 DC Cd A . n
A 1 5 DG 5 5 5 DG Gd A . n
A 1 6 DC 6 6 6 DC Cd A . n
A 1 7 DC 7 7 7 DC Cd A . n
A 1 8 DG 8 8 8 DG Gd A . n
A 1 9 DC 9 9 9 DC Cd A . n
A 1 10 DC 10 10 10 DC Cd A . n
A 1 11 DG 11 11 11 DG Gd A . n
A 1 12 DA 12 12 12 DA Ad A . n
A 1 13 DA 13 13 13 DA Ad A . n
B 1 1 DT 1 14 14 DT Td B . n
B 1 2 DT 2 15 15 DT Td B . n
B 1 3 DC 3 16 ? ? ? B . n
B 1 4 DC 4 17 17 DC Cd B . n
B 1 5 DG 5 18 18 DG Gd B . n
B 1 6 DC 6 19 19 DC Cd B . n
B 1 7 DC 7 20 20 DC Cd B . n
B 1 8 DG 8 21 21 DG Gd B . n
B 1 9 DC 9 22 22 DC Cd B . n
B 1 10 DC 10 23 23 DC Cd B . n
B 1 11 DG 11 24 24 DG Gd B . n
B 1 12 DA 12 25 25 DA Ad B . n
B 1 13 DA 13 26 26 DA Ad B . n
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
C 2 CDR 1 C CDR 1 C CDR 57 n
C 2 CDR 2 C CDR 2 C CDR 58 n
C 2 ERI 3 C ERI 3 C ERI 59 n
D 3 ARI 1 D ARI 1 C ARI 61 n
D 3 1GL 2 D 1GL 2 C 1GL 60 n
E 3 ARI 1 E ARI 1 C ARI 55 n
E 3 1GL 2 E 1GL 2 C 1GL 54 n
F 2 CDR 1 F CDR 1 C CDR 63 n
F 2 CDR 2 F CDR 2 C CDR 64 n
F 2 ERI 3 F ERI 3 C ERI 65 n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 CPH 1 106 62 CPH CPH A .
H 5 NI 1 107 600 NI NI A .
I 5 NI 1 108 601 NI NI A .
J 4 CPH 1 103 56 CPH CPH B .
K 5 NI 1 107 602 NI NI B .
L 6 HOH 1 201 125 HOH HOH A .
L 6 HOH 2 202 153 HOH HOH A .
L 6 HOH 3 203 177 HOH HOH A .
L 6 HOH 4 204 150 HOH HOH A .
L 6 HOH 5 205 100 HOH HOH A .
L 6 HOH 6 206 105 HOH HOH A .
L 6 HOH 7 207 152 HOH HOH A .
L 6 HOH 8 208 165 HOH HOH A .
L 6 HOH 9 209 102 HOH HOH A .
L 6 HOH 10 210 132 HOH HOH A .
L 6 HOH 11 211 104 HOH HOH A .
L 6 HOH 12 212 176 HOH HOH A .
L 6 HOH 13 213 137 HOH HOH A .
L 6 HOH 14 214 115 HOH HOH A .
L 6 HOH 15 215 163 HOH HOH A .
L 6 HOH 16 216 143 HOH HOH A .
L 6 HOH 17 217 112 HOH HOH A .
L 6 HOH 18 218 103 HOH HOH A .
L 6 HOH 19 219 172 HOH HOH A .
L 6 HOH 20 220 140 HOH HOH A .
L 6 HOH 21 221 161 HOH HOH A .
L 6 HOH 22 222 158 HOH HOH A .
L 6 HOH 23 223 128 HOH HOH A .
L 6 HOH 24 224 169 HOH HOH A .
L 6 HOH 25 225 145 HOH HOH A .
L 6 HOH 26 226 130 HOH HOH A .
L 6 HOH 27 227 180 HOH HOH A .
L 6 HOH 28 228 183 HOH HOH A .
L 6 HOH 29 229 118 HOH HOH A .
L 6 HOH 30 230 175 HOH HOH A .
L 6 HOH 31 231 121 HOH HOH A .
L 6 HOH 32 232 187 HOH HOH A .
L 6 HOH 33 233 131 HOH HOH A .
L 6 HOH 34 234 155 HOH HOH A .
L 6 HOH 35 235 149 HOH HOH A .
L 6 HOH 36 236 111 HOH HOH A .
L 6 HOH 37 237 135 HOH HOH A .
L 6 HOH 38 238 106 HOH HOH A .
L 6 HOH 39 239 151 HOH HOH A .
L 6 HOH 40 240 188 HOH HOH A .
L 6 HOH 41 241 173 HOH HOH A .
L 6 HOH 42 242 119 HOH HOH A .
L 6 HOH 43 243 168 HOH HOH A .
L 6 HOH 44 244 181 HOH HOH A .
L 6 HOH 45 245 186 HOH HOH A .
L 6 HOH 46 246 178 HOH HOH A .
M 6 HOH 1 201 162 HOH HOH B .
M 6 HOH 2 202 170 HOH HOH B .
M 6 HOH 3 203 174 HOH HOH B .
M 6 HOH 4 204 160 HOH HOH B .
M 6 HOH 5 205 126 HOH HOH B .
M 6 HOH 6 206 164 HOH HOH B .
M 6 HOH 7 207 101 HOH HOH B .
M 6 HOH 8 208 110 HOH HOH B .
M 6 HOH 9 209 114 HOH HOH B .
M 6 HOH 10 210 148 HOH HOH B .
M 6 HOH 11 211 184 HOH HOH B .
M 6 HOH 12 212 109 HOH HOH B .
M 6 HOH 13 213 107 HOH HOH B .
M 6 HOH 14 214 117 HOH HOH B .
M 6 HOH 15 215 171 HOH HOH B .
M 6 HOH 16 216 134 HOH HOH B .
M 6 HOH 17 217 113 HOH HOH B .
M 6 HOH 18 218 123 HOH HOH B .
M 6 HOH 19 219 154 HOH HOH B .
M 6 HOH 20 220 166 HOH HOH B .
M 6 HOH 21 221 147 HOH HOH B .
M 6 HOH 22 222 120 HOH HOH B .
M 6 HOH 23 223 108 HOH HOH B .
M 6 HOH 24 224 116 HOH HOH B .
M 6 HOH 25 225 129 HOH HOH B .
M 6 HOH 26 226 167 HOH HOH B .
M 6 HOH 27 227 157 HOH HOH B .
M 6 HOH 28 228 138 HOH HOH B .
M 6 HOH 29 229 156 HOH HOH B .
M 6 HOH 30 230 142 HOH HOH B .
M 6 HOH 31 231 136 HOH HOH B .
M 6 HOH 32 232 146 HOH HOH B .
M 6 HOH 33 233 159 HOH HOH B .
M 6 HOH 34 234 179 HOH HOH B .
M 6 HOH 35 235 141 HOH HOH B .
M 6 HOH 36 236 124 HOH HOH B .
M 6 HOH 37 237 139 HOH HOH B .
M 6 HOH 38 238 144 HOH HOH B .
M 6 HOH 39 239 127 HOH HOH B .
M 6 HOH 40 240 122 HOH HOH B .
M 6 HOH 41 241 133 HOH HOH B .
M 6 HOH 42 242 182 HOH HOH B .
M 6 HOH 43 243 185 HOH HOH B .
#
loop_
_software.citation_id
_software.classification
_software.compiler_name
_software.compiler_version
_software.contact_author
_software.contact_author_email
_software.date
_software.description
_software.dependencies
_software.hardware
_software.language
_software.location
_software.mods
_software.name
_software.os
_software.os_version
_software.type
_software.version
_software.pdbx_ordinal
? 'data collection' ? ? ? ? ? ? ? ? ? ? ? Blu-Ice ? ? ? . 1
? 'data processing' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2
? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3
? phasing ? ? ? ? ? ? ? ? ? ? ? SHELX ? ? ? . 4
? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.10.1-2155 5
#
_cell.angle_alpha 90.000
_cell.angle_alpha_esd ?
_cell.angle_beta 90.000
_cell.angle_beta_esd ?
_cell.angle_gamma 120.000
_cell.angle_gamma_esd ?
_cell.entry_id 5XEW
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 48.291
_cell.length_a_esd ?
_cell.length_b 48.291
_cell.length_b_esd ?
_cell.length_c 83.356
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB 12
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 5XEW
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 153
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 32 1 2'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 5XEW
_exptl.crystals_number 1
_exptl.details ?
_exptl.method 'X-RAY DIFFRACTION'
_exptl.method_details ?
#
_exptl_crystal.colour ?
_exptl_crystal.density_diffrn ?
_exptl_crystal.density_Matthews 3.87
_exptl_crystal.density_method ?
_exptl_crystal.density_percent_sol 68.23
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.id 1
_exptl_crystal.preparation ?
_exptl_crystal.size_max ?
_exptl_crystal.size_mid ?
_exptl_crystal.size_min ?
_exptl_crystal.size_rad ?
_exptl_crystal.colour_lustre ?
_exptl_crystal.colour_modifier ?
_exptl_crystal.colour_primary ?
_exptl_crystal.density_meas ?
_exptl_crystal.density_meas_esd ?
_exptl_crystal.density_meas_gt ?
_exptl_crystal.density_meas_lt ?
_exptl_crystal.density_meas_temp ?
_exptl_crystal.density_meas_temp_esd ?
_exptl_crystal.density_meas_temp_gt ?
_exptl_crystal.density_meas_temp_lt ?
_exptl_crystal.pdbx_crystal_image_url ?
_exptl_crystal.pdbx_crystal_image_format ?
_exptl_crystal.pdbx_mosaicity ?
_exptl_crystal.pdbx_mosaicity_esd ?
#
_exptl_crystal_grow.apparatus ?
_exptl_crystal_grow.atmosphere ?
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.details ?
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.method_ref ?
_exptl_crystal_grow.pH 6.0
_exptl_crystal_grow.pressure ?
_exptl_crystal_grow.pressure_esd ?
_exptl_crystal_grow.seeding ?
_exptl_crystal_grow.seeding_ref ?
_exptl_crystal_grow.temp 277
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.temp_esd ?
_exptl_crystal_grow.time ?
_exptl_crystal_grow.pdbx_details
;1.0 mM single stranded-DNA, 2.0 mM Chromomycin A3, 4mM NiSO4 6H2O, 50 mM sodium-cacodylate buffer, 5 mM MgCl2, 1 mM spermine, 3 % MPD
;
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.ambient_environment ?
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.ambient_temp_esd ?
_diffrn.crystal_id 1
_diffrn.crystal_support ?
_diffrn.crystal_treatment ?
_diffrn.details ?
_diffrn.id 1
_diffrn.ambient_pressure ?
_diffrn.ambient_pressure_esd ?
_diffrn.ambient_pressure_gt ?
_diffrn.ambient_pressure_lt ?
_diffrn.ambient_temp_gt ?
_diffrn.ambient_temp_lt ?
#
_diffrn_detector.details ?
_diffrn_detector.detector CCD
_diffrn_detector.diffrn_id 1
_diffrn_detector.type 'ADSC QUANTUM 315r'
_diffrn_detector.area_resol_mean ?
_diffrn_detector.dtime ?
_diffrn_detector.pdbx_frames_total ?
_diffrn_detector.pdbx_collection_time_total ?
_diffrn_detector.pdbx_collection_date 2013-01-01
#
_diffrn_radiation.collimation ?
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.filter_edge ?
_diffrn_radiation.inhomogeneity ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.polarisn_norm ?
_diffrn_radiation.polarisn_ratio ?
_diffrn_radiation.probe ?
_diffrn_radiation.type ?
_diffrn_radiation.xray_symbol ?
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_wavelength_list ?
_diffrn_radiation.pdbx_wavelength ?
_diffrn_radiation.pdbx_diffrn_protocol MAD
_diffrn_radiation.pdbx_analyzer ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
loop_
_diffrn_radiation_wavelength.id
_diffrn_radiation_wavelength.wavelength
_diffrn_radiation_wavelength.wt
1 1.45104 1.0
2 1.48491 1.0
3 1.48582 1.0
#
_diffrn_source.current ?
_diffrn_source.details ?
_diffrn_source.diffrn_id 1
_diffrn_source.power ?
_diffrn_source.size ?
_diffrn_source.source SYNCHROTRON
_diffrn_source.target ?
_diffrn_source.type 'NSRRC BEAMLINE BL13B1'
_diffrn_source.voltage ?
_diffrn_source.take-off_angle ?
_diffrn_source.pdbx_wavelength_list 1.45104,1.48491,1.48582
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_beamline BL13B1
_diffrn_source.pdbx_synchrotron_site NSRRC
#
_reflns.B_iso_Wilson_estimate 30.690
_reflns.entry_id 5XEW
_reflns.data_reduction_details ?
_reflns.data_reduction_method ?
_reflns.d_resolution_high 1.750
_reflns.d_resolution_low 30.000
_reflns.details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.number_all ?
_reflns.number_obs 21692
_reflns.observed_criterion ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.observed_criterion_I_max ?
_reflns.observed_criterion_I_min ?
_reflns.observed_criterion_sigma_F ?
_reflns.observed_criterion_sigma_I ?
_reflns.percent_possible_obs 99.600
_reflns.R_free_details ?
_reflns.Rmerge_F_all ?
_reflns.Rmerge_F_obs ?
_reflns.Friedel_coverage ?
_reflns.number_gt ?
_reflns.threshold_expression ?
_reflns.pdbx_redundancy 10.100
_reflns.pdbx_Rmerge_I_obs 0.050
_reflns.pdbx_Rmerge_I_all ?
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_av_sigmaI ?
_reflns.pdbx_netI_over_sigmaI 28.200
_reflns.pdbx_res_netI_over_av_sigmaI_2 ?
_reflns.pdbx_res_netI_over_sigmaI_2 ?
_reflns.pdbx_chi_squared 2.733
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_d_res_high_opt ?
_reflns.pdbx_d_res_low_opt ?
_reflns.pdbx_d_res_opt_method ?
_reflns.phase_calculation_details ?
_reflns.pdbx_Rrim_I_all ?
_reflns.pdbx_Rpim_I_all ?
_reflns.pdbx_d_opt ?
_reflns.pdbx_number_measured_all ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.pdbx_CC_half ?
_reflns.pdbx_R_split ?
#
loop_
_reflns_shell.d_res_high
_reflns_shell.d_res_low
_reflns_shell.meanI_over_sigI_all
_reflns_shell.meanI_over_sigI_obs
_reflns_shell.number_measured_all
_reflns_shell.number_measured_obs
_reflns_shell.number_possible
_reflns_shell.number_unique_all
_reflns_shell.number_unique_obs
_reflns_shell.percent_possible_all
_reflns_shell.percent_possible_obs
_reflns_shell.Rmerge_F_all
_reflns_shell.Rmerge_F_obs
_reflns_shell.Rmerge_I_all
_reflns_shell.Rmerge_I_obs
_reflns_shell.meanI_over_sigI_gt
_reflns_shell.meanI_over_uI_all
_reflns_shell.meanI_over_uI_gt
_reflns_shell.number_measured_gt
_reflns_shell.number_unique_gt
_reflns_shell.percent_possible_gt
_reflns_shell.Rmerge_F_gt
_reflns_shell.Rmerge_I_gt
_reflns_shell.pdbx_redundancy
_reflns_shell.pdbx_Rsym_value
_reflns_shell.pdbx_chi_squared
_reflns_shell.pdbx_netI_over_sigmaI_all
_reflns_shell.pdbx_netI_over_sigmaI_obs
_reflns_shell.pdbx_Rrim_I_all
_reflns_shell.pdbx_Rpim_I_all
_reflns_shell.pdbx_rejects
_reflns_shell.pdbx_ordinal
_reflns_shell.pdbx_diffrn_id
_reflns_shell.pdbx_CC_half
_reflns_shell.pdbx_R_split
1.750 1.810 ? ? ? ? ? ? ? 96.500 ? ? ? ? 0.364 ? ? ? ? ? ? ? ? 6.100 ? 1.038 ? ? ? ? ? 1 1 ? ?
1.810 1.890 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.235 ? ? ? ? ? ? ? ? 8.900 ? 1.078 ? ? ? ? ? 2 1 ? ?
1.890 1.970 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.163 ? ? ? ? ? ? ? ? 10.400 ? 1.199 ? ? ? ? ? 3 1 ? ?
1.970 2.070 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.119 ? ? ? ? ? ? ? ? 10.700 ? 1.310 ? ? ? ? ? 4 1 ? ?
2.070 2.200 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.097 ? ? ? ? ? ? ? ? 10.700 ? 1.640 ? ? ? ? ? 5 1 ? ?
2.200 2.370 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.078 ? ? ? ? ? ? ? ? 10.900 ? 1.993 ? ? ? ? ? 6 1 ? ?
2.370 2.610 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.076 ? ? ? ? ? ? ? ? 10.900 ? 2.820 ? ? ? ? ? 7 1 ? ?
2.610 2.990 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.082 ? ? ? ? ? ? ? ? 10.700 ? 2.846 ? ? ? ? ? 8 1 ? ?
2.990 3.770 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.044 ? ? ? ? ? ? ? ? 10.700 ? 4.074 ? ? ? ? ? 9 1 ? ?
3.770 30.000 ? ? ? ? ? ? ? 99.200 ? ? ? ? 0.041 ? ? ? ? ? ? ? ? 10.400 ? 7.942 ? ? ? ? ? 10 1 ? ?
#
_refine.aniso_B[1][1] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[2][3] ?
_refine.aniso_B[3][3] ?
_refine.B_iso_max 115.530
_refine.B_iso_mean 39.6775
_refine.B_iso_min 20.710
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.details ?
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 5XEW
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high 1.7510
_refine.ls_d_res_low 23.1920
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs 21692
_refine.ls_number_reflns_R_free 2186
_refine.ls_number_reflns_R_work ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs 99.0000
_refine.ls_percent_reflns_R_free 10.0800
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.2103
_refine.ls_R_factor_R_free 0.2379
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work 0.2071
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 1.350
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.pdbx_method_to_determine_struct MAD
_refine.pdbx_starting_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_solvent_vdw_probe_radii 1.1100
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.9000
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error 26.9500
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id 1
_refine.overall_SU_B ?
_refine.overall_SU_ML 0.1600
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
_refine_hist.cycle_id final
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.d_res_high 1.7510
_refine_hist.d_res_low 23.1920
_refine_hist.pdbx_number_atoms_ligand 247
_refine_hist.number_atoms_solvent 89
_refine_hist.number_atoms_total 704
_refine_hist.pdbx_number_residues_total 20
_refine_hist.pdbx_B_iso_mean_ligand 40.82
_refine_hist.pdbx_B_iso_mean_solvent 42.77
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 368
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'X-RAY DIFFRACTION' ? 0.007 ? 714 ? f_bond_d ? ?
'X-RAY DIFFRACTION' ? 1.088 ? 1056 ? f_angle_d ? ?
'X-RAY DIFFRACTION' ? 0.055 ? 136 ? f_chiral_restr ? ?
'X-RAY DIFFRACTION' ? 0.010 ? 30 ? f_plane_restr ? ?
'X-RAY DIFFRACTION' ? 27.056 ? 316 ? f_dihedral_angle_d ? ?
#
loop_
_refine_ls_shell.pdbx_refine_id
_refine_ls_shell.d_res_high
_refine_ls_shell.d_res_low
_refine_ls_shell.number_reflns_all
_refine_ls_shell.number_reflns_obs
_refine_ls_shell.number_reflns_R_free
_refine_ls_shell.number_reflns_R_work
_refine_ls_shell.percent_reflns_obs
_refine_ls_shell.percent_reflns_R_free
_refine_ls_shell.R_factor_all
_refine_ls_shell.R_factor_obs
_refine_ls_shell.R_factor_R_free
_refine_ls_shell.R_factor_R_free_error
_refine_ls_shell.R_factor_R_work
_refine_ls_shell.redundancy_reflns_all
_refine_ls_shell.redundancy_reflns_obs
_refine_ls_shell.wR_factor_all
_refine_ls_shell.wR_factor_obs
_refine_ls_shell.wR_factor_R_free
_refine_ls_shell.wR_factor_R_work
_refine_ls_shell.pdbx_total_number_of_bins_used
_refine_ls_shell.pdbx_phase_error
_refine_ls_shell.pdbx_fsc_work
_refine_ls_shell.pdbx_fsc_free
'X-RAY DIFFRACTION' 1.7508 1.7889 1211 . 127 1084 87.0000 . . . 0.2630 0.0000 0.2919 . . . . . . 16 . . .
'X-RAY DIFFRACTION' 1.7889 1.8305 1312 . 129 1183 99.0000 . . . 0.2993 0.0000 0.2451 . . . . . . 16 . . .
'X-RAY DIFFRACTION' 1.8305 1.8763 1398 . 144 1254 100.0000 . . . 0.2575 0.0000 0.2272 . . . . . . 16 . . .
'X-RAY DIFFRACTION' 1.8763 1.9270 1384 . 144 1240 100.0000 . . . 0.2342 0.0000 0.2177 . . . . . . 16 . . .
'X-RAY DIFFRACTION' 1.9270 1.9836 1336 . 126 1210 100.0000 . . . 0.2618 0.0000 0.1901 . . . . . . 16 . . .
'X-RAY DIFFRACTION' 1.9836 2.0476 1386 . 148 1238 100.0000 . . . 0.2888 0.0000 0.2076 . . . . . . 16 . . .
'X-RAY DIFFRACTION' 2.0476 2.1208 1372 . 138 1234 100.0000 . . . 0.2164 0.0000 0.2009 . . . . . . 16 . . .
'X-RAY DIFFRACTION' 2.1208 2.2056 1364 . 134 1230 100.0000 . . . 0.3360 0.0000 0.2503 . . . . . . 16 . . .
'X-RAY DIFFRACTION' 2.2056 2.3059 1370 . 132 1238 100.0000 . . . 0.2745 0.0000 0.2218 . . . . . . 16 . . .
'X-RAY DIFFRACTION' 2.3059 2.4274 1344 . 136 1208 100.0000 . . . 0.2420 0.0000 0.2498 . . . . . . 16 . . .
'X-RAY DIFFRACTION' 2.4274 2.5792 1369 . 136 1233 100.0000 . . . 0.2887 0.0000 0.2349 . . . . . . 16 . . .
'X-RAY DIFFRACTION' 2.5792 2.7781 1370 . 126 1244 100.0000 . . . 0.3235 0.0000 0.2664 . . . . . . 16 . . .
'X-RAY DIFFRACTION' 2.7781 3.0571 1381 . 138 1243 100.0000 . . . 0.2536 0.0000 0.2695 . . . . . . 16 . . .
'X-RAY DIFFRACTION' 3.0571 3.4982 1357 . 146 1211 100.0000 . . . 0.2328 0.0000 0.1935 . . . . . . 16 . . .
'X-RAY DIFFRACTION' 3.4982 4.4024 1395 . 145 1250 100.0000 . . . 0.2036 0.0000 0.1767 . . . . . . 16 . . .
'X-RAY DIFFRACTION' 4.4024 23.1941 1343 . 137 1206 99.0000 . . . 0.2003 0.0000 0.1712 . . . . . . 16 . . .
#
_struct.entry_id 5XEW
_struct.title 'Crystal structure of the [Ni2+-(chromomycin A3)2]-CCG repeats complex'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 5XEW
_struct_keywords.text
;Trinucleotide repeats, neurological disease, induced fit recognition, metal binding ligand, consecutive bases flip-out, DNA deformation, molecular diagnostics, DNA-ANTIBIOTIC complex
;
_struct_keywords.pdbx_keywords DNA/ANTIBIOTIC
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 2 ?
D N N 3 ?
E N N 3 ?
F N N 2 ?
G N N 4 ?
H N N 5 ?
I N N 5 ?
J N N 4 ?
K N N 5 ?
L N N 6 ?
M N N 6 ?
#
_struct_ref.id 1
_struct_ref.db_name PDB
_struct_ref.db_code 5XEW
_struct_ref.pdbx_db_accession 5XEW
_struct_ref.pdbx_db_isoform ?
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin 1
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 5XEW A 1 ? 13 ? 5XEW 1 ? 13 ? 1 13
2 1 5XEW B 1 ? 13 ? 5XEW 14 ? 26 ? 14 26
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 6480 ?
1 MORE 42 ?
1 'SSA (A^2)' 3900 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support none
_pdbx_struct_assembly_auth_evidence.details ?
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale one ? G CPH . C6 ? ? ? 1_555 D ARI . O1 ? ? A CPH 106 D ARI 1 1_555 ? ? ? ? ? ? ? 1.375 ? ?
covale2 covale one ? G CPH . C2 ? ? ? 1_555 F CDR . O1 ? ? A CPH 106 F CDR 1 1_555 ? ? ? ? ? ? ? 1.379 ? ?
covale3 covale one ? J CPH . C2 ? ? ? 1_555 C CDR . O1 ? ? B CPH 103 C CDR 1 1_555 ? ? ? ? ? ? ? 1.380 ? ?
covale4 covale one ? J CPH . C6 ? ? ? 1_555 E ARI . O1 ? ? B CPH 103 E ARI 1 1_555 ? ? ? ? ? ? ? 1.376 ? ?
covale5 covale one ? C CDR . C3 ? ? ? 1_555 C CDR . O1 ? ? C CDR 1 C CDR 2 1_555 ? ? ? ? ? ? ? 1.378 ? ?
covale6 covale one ? C CDR . C3 ? ? ? 1_555 C ERI . O1 ? ? C CDR 2 C ERI 3 1_555 ? ? ? ? ? ? ? 1.377 ? ?
covale7 covale one ? D ARI . C3 ? ? ? 1_555 D 1GL . O1 ? ? D ARI 1 D 1GL 2 1_555 ? ? ? ? ? ? ? 1.378 ? ?
covale8 covale one ? E ARI . C3 ? ? ? 1_555 E 1GL . O1 ? ? E ARI 1 E 1GL 2 1_555 ? ? ? ? ? ? ? 1.378 ? ?
covale9 covale one ? F CDR . C3 ? ? ? 1_555 F CDR . O1 ? ? F CDR 1 F CDR 2 1_555 ? ? ? ? ? ? ? 1.378 ? ?
covale10 covale one ? F CDR . C3 ? ? ? 1_555 F ERI . O1 ? ? F CDR 2 F ERI 3 1_555 ? ? ? ? ? ? ? 1.378 ? ?
metalc1 metalc ? ? A DG 8 N7 ? ? ? 1_555 I NI . NI ? ? A DG 8 A NI 108 1_555 ? ? ? ? ? ? ? 2.121 ? ?
metalc2 metalc ? ? G CPH . O1 ? ? ? 1_555 H NI . NI ? ? A CPH 106 A NI 107 1_555 ? ? ? ? ? ? ? 1.963 ? ?
metalc3 metalc ? ? G CPH . O9 ? ? ? 1_555 H NI . NI ? ? A CPH 106 A NI 107 1_555 ? ? ? ? ? ? ? 1.939 ? ?
metalc4 metalc ? ? H NI . NI ? ? ? 1_555 L HOH . O ? ? A NI 107 A HOH 205 1_555 ? ? ? ? ? ? ? 2.120 ? ?
metalc5 metalc ? ? H NI . NI ? ? ? 1_555 J CPH . O1 ? ? A NI 107 B CPH 103 1_555 ? ? ? ? ? ? ? 1.981 ? ?
metalc6 metalc ? ? H NI . NI ? ? ? 1_555 J CPH . O9 ? ? A NI 107 B CPH 103 1_555 ? ? ? ? ? ? ? 1.931 ? ?
metalc7 metalc ? ? H NI . NI ? ? ? 1_555 M HOH . O ? ? A NI 107 B HOH 207 1_555 ? ? ? ? ? ? ? 2.127 ? ?
metalc8 metalc ? ? I NI . NI ? ? ? 1_555 L HOH . O ? ? A NI 108 A HOH 206 1_555 ? ? ? ? ? ? ? 2.003 ? ?
metalc9 metalc ? ? I NI . NI ? ? ? 1_555 L HOH . O ? ? A NI 108 A HOH 209 1_555 ? ? ? ? ? ? ? 1.820 ? ?
metalc10 metalc ? ? I NI . NI ? ? ? 1_555 L HOH . O ? ? A NI 108 A HOH 211 1_555 ? ? ? ? ? ? ? 1.970 ? ?
metalc11 metalc ? ? I NI . NI ? ? ? 1_555 L HOH . O ? ? A NI 108 A HOH 218 1_555 ? ? ? ? ? ? ? 1.896 ? ?
metalc12 metalc ? ? I NI . NI ? ? ? 1_555 L HOH . O ? ? A NI 108 A HOH 238 1_555 ? ? ? ? ? ? ? 2.305 ? ?
metalc13 metalc ? ? L HOH . O ? ? ? 1_555 K NI . NI ? ? A HOH 236 B NI 107 1_555 ? ? ? ? ? ? ? 2.255 ? ?
metalc14 metalc ? ? B DG 8 N7 ? ? ? 1_555 K NI . NI ? ? B DG 21 B NI 107 1_555 ? ? ? ? ? ? ? 2.118 ? ?
metalc15 metalc ? ? K NI . NI ? ? ? 1_555 M HOH . O ? ? B NI 107 B HOH 208 1_555 ? ? ? ? ? ? ? 2.048 ? ?
metalc16 metalc ? ? K NI . NI ? ? ? 1_555 M HOH . O ? ? B NI 107 B HOH 212 1_555 ? ? ? ? ? ? ? 1.954 ? ?
metalc17 metalc ? ? K NI . NI ? ? ? 1_555 M HOH . O ? ? B NI 107 B HOH 213 1_555 ? ? ? ? ? ? ? 1.831 ? ?
metalc18 metalc ? ? K NI . NI ? ? ? 1_555 M HOH . O ? ? B NI 107 B HOH 223 1_555 ? ? ? ? ? ? ? 1.907 ? ?
hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 13 N7 ? ? A DT 1 B DA 26 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ?
hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 13 N6 ? ? A DT 1 B DA 26 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ?
hydrog3 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 12 N1 ? ? A DT 2 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog4 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 12 N6 ? ? A DT 2 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog5 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 4 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog6 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 4 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog7 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 4 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog8 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 5 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog9 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 5 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog10 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 5 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog11 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 8 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog12 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 8 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog13 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 8 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog14 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 8 N1 ? ? A DC 9 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog15 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 8 O6 ? ? A DC 9 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog16 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 8 N2 ? ? A DC 9 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog17 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 10 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog18 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 10 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog19 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 10 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog20 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 11 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog21 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 11 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog22 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 11 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog23 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 12 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog24 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 12 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ?
hydrog25 hydrog ? ? A DA 13 N6 ? ? ? 1_555 B DT 1 O4 ? ? A DA 13 B DT 14 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ?
hydrog26 hydrog ? ? A DA 13 N7 ? ? ? 1_555 B DT 1 N3 ? ? A DA 13 B DT 14 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
metalc ? ?
hydrog ? ?
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 N7 ? A DG 8 ? A DG 8 ? 1_555 NI ? I NI . ? A NI 108 ? 1_555 O ? L HOH . ? A HOH 206 ? 1_555 93.2 ?
2 N7 ? A DG 8 ? A DG 8 ? 1_555 NI ? I NI . ? A NI 108 ? 1_555 O ? L HOH . ? A HOH 209 ? 1_555 84.1 ?
3 O ? L HOH . ? A HOH 206 ? 1_555 NI ? I NI . ? A NI 108 ? 1_555 O ? L HOH . ? A HOH 209 ? 1_555 93.1 ?
4 N7 ? A DG 8 ? A DG 8 ? 1_555 NI ? I NI . ? A NI 108 ? 1_555 O ? L HOH . ? A HOH 211 ? 1_555 92.9 ?
5 O ? L HOH . ? A HOH 206 ? 1_555 NI ? I NI . ? A NI 108 ? 1_555 O ? L HOH . ? A HOH 211 ? 1_555 160.4 ?
6 O ? L HOH . ? A HOH 209 ? 1_555 NI ? I NI . ? A NI 108 ? 1_555 O ? L HOH . ? A HOH 211 ? 1_555 69.1 ?
7 N7 ? A DG 8 ? A DG 8 ? 1_555 NI ? I NI . ? A NI 108 ? 1_555 O ? L HOH . ? A HOH 218 ? 1_555 93.3 ?
8 O ? L HOH . ? A HOH 206 ? 1_555 NI ? I NI . ? A NI 108 ? 1_555 O ? L HOH . ? A HOH 218 ? 1_555 81.9 ?
9 O ? L HOH . ? A HOH 209 ? 1_555 NI ? I NI . ? A NI 108 ? 1_555 O ? L HOH . ? A HOH 218 ? 1_555 174.3 ?
10 O ? L HOH . ? A HOH 211 ? 1_555 NI ? I NI . ? A NI 108 ? 1_555 O ? L HOH . ? A HOH 218 ? 1_555 116.3 ?
11 N7 ? A DG 8 ? A DG 8 ? 1_555 NI ? I NI . ? A NI 108 ? 1_555 O ? L HOH . ? A HOH 238 ? 1_555 169.1 ?
12 O ? L HOH . ? A HOH 206 ? 1_555 NI ? I NI . ? A NI 108 ? 1_555 O ? L HOH . ? A HOH 238 ? 1_555 95.4 ?
13 O ? L HOH . ? A HOH 209 ? 1_555 NI ? I NI . ? A NI 108 ? 1_555 O ? L HOH . ? A HOH 238 ? 1_555 88.7 ?
14 O ? L HOH . ? A HOH 211 ? 1_555 NI ? I NI . ? A NI 108 ? 1_555 O ? L HOH . ? A HOH 238 ? 1_555 76.8 ?
15 O ? L HOH . ? A HOH 218 ? 1_555 NI ? I NI . ? A NI 108 ? 1_555 O ? L HOH . ? A HOH 238 ? 1_555 94.6 ?
16 O1 ? G CPH . ? A CPH 106 ? 1_555 NI ? H NI . ? A NI 107 ? 1_555 O9 ? G CPH . ? A CPH 106 ? 1_555 82.8 ?
17 O1 ? G CPH . ? A CPH 106 ? 1_555 NI ? H NI . ? A NI 107 ? 1_555 O ? L HOH . ? A HOH 205 ? 1_555 92.1 ?
18 O9 ? G CPH . ? A CPH 106 ? 1_555 NI ? H NI . ? A NI 107 ? 1_555 O ? L HOH . ? A HOH 205 ? 1_555 91.4 ?
19 O1 ? G CPH . ? A CPH 106 ? 1_555 NI ? H NI . ? A NI 107 ? 1_555 O1 ? J CPH . ? B CPH 103 ? 1_555 83.9 ?
20 O9 ? G CPH . ? A CPH 106 ? 1_555 NI ? H NI . ? A NI 107 ? 1_555 O1 ? J CPH . ? B CPH 103 ? 1_555 97.1 ?
21 O ? L HOH . ? A HOH 205 ? 1_555 NI ? H NI . ? A NI 107 ? 1_555 O1 ? J CPH . ? B CPH 103 ? 1_555 170.2 ?
22 O1 ? G CPH . ? A CPH 106 ? 1_555 NI ? H NI . ? A NI 107 ? 1_555 O9 ? J CPH . ? B CPH 103 ? 1_555 97.3 ?
23 O9 ? G CPH . ? A CPH 106 ? 1_555 NI ? H NI . ? A NI 107 ? 1_555 O9 ? J CPH . ? B CPH 103 ? 1_555 179.0 ?
24 O ? L HOH . ? A HOH 205 ? 1_555 NI ? H NI . ? A NI 107 ? 1_555 O9 ? J CPH . ? B CPH 103 ? 1_555 87.6 ?
25 O1 ? J CPH . ? B CPH 103 ? 1_555 NI ? H NI . ? A NI 107 ? 1_555 O9 ? J CPH . ? B CPH 103 ? 1_555 83.9 ?
26 O1 ? G CPH . ? A CPH 106 ? 1_555 NI ? H NI . ? A NI 107 ? 1_555 O ? M HOH . ? B HOH 207 ? 1_555 168.2 ?
27 O9 ? G CPH . ? A CPH 106 ? 1_555 NI ? H NI . ? A NI 107 ? 1_555 O ? M HOH . ? B HOH 207 ? 1_555 86.2 ?
28 O ? L HOH . ? A HOH 205 ? 1_555 NI ? H NI . ? A NI 107 ? 1_555 O ? M HOH . ? B HOH 207 ? 1_555 92.5 ?
29 O1 ? J CPH . ? B CPH 103 ? 1_555 NI ? H NI . ? A NI 107 ? 1_555 O ? M HOH . ? B HOH 207 ? 1_555 93.1 ?
30 O9 ? J CPH . ? B CPH 103 ? 1_555 NI ? H NI . ? A NI 107 ? 1_555 O ? M HOH . ? B HOH 207 ? 1_555 93.7 ?
31 O ? L HOH . ? A HOH 236 ? 1_555 NI ? K NI . ? B NI 107 ? 1_555 N7 ? B DG 8 ? B DG 21 ? 1_555 167.5 ?
32 O ? L HOH . ? A HOH 236 ? 1_555 NI ? K NI . ? B NI 107 ? 1_555 O ? M HOH . ? B HOH 208 ? 1_555 94.9 ?
33 N7 ? B DG 8 ? B DG 21 ? 1_555 NI ? K NI . ? B NI 107 ? 1_555 O ? M HOH . ? B HOH 208 ? 1_555 90.9 ?
34 O ? L HOH . ? A HOH 236 ? 1_555 NI ? K NI . ? B NI 107 ? 1_555 O ? M HOH . ? B HOH 212 ? 1_555 85.0 ?
35 N7 ? B DG 8 ? B DG 21 ? 1_555 NI ? K NI . ? B NI 107 ? 1_555 O ? M HOH . ? B HOH 212 ? 1_555 92.4 ?
36 O ? M HOH . ? B HOH 208 ? 1_555 NI ? K NI . ? B NI 107 ? 1_555 O ? M HOH . ? B HOH 212 ? 1_555 164.0 ?
37 O ? L HOH . ? A HOH 236 ? 1_555 NI ? K NI . ? B NI 107 ? 1_555 O ? M HOH . ? B HOH 213 ? 1_555 105.0 ?
38 N7 ? B DG 8 ? B DG 21 ? 1_555 NI ? K NI . ? B NI 107 ? 1_555 O ? M HOH . ? B HOH 213 ? 1_555 85.3 ?
39 O ? M HOH . ? B HOH 208 ? 1_555 NI ? K NI . ? B NI 107 ? 1_555 O ? M HOH . ? B HOH 213 ? 1_555 95.8 ?
40 O ? M HOH . ? B HOH 212 ? 1_555 NI ? K NI . ? B NI 107 ? 1_555 O ? M HOH . ? B HOH 213 ? 1_555 68.9 ?
41 O ? L HOH . ? A HOH 236 ? 1_555 NI ? K NI . ? B NI 107 ? 1_555 O ? M HOH . ? B HOH 223 ? 1_555 77.0 ?
42 N7 ? B DG 8 ? B DG 21 ? 1_555 NI ? K NI . ? B NI 107 ? 1_555 O ? M HOH . ? B HOH 223 ? 1_555 93.3 ?
43 O ? M HOH . ? B HOH 208 ? 1_555 NI ? K NI . ? B NI 107 ? 1_555 O ? M HOH . ? B HOH 223 ? 1_555 79.3 ?
44 O ? M HOH . ? B HOH 212 ? 1_555 NI ? K NI . ? B NI 107 ? 1_555 O ? M HOH . ? B HOH 223 ? 1_555 116.1 ?
45 O ? M HOH . ? B HOH 213 ? 1_555 NI ? K NI . ? B NI 107 ? 1_555 O ? M HOH . ? B HOH 223 ? 1_555 174.9 ?
#
loop_
_pdbx_validate_close_contact.id
_pdbx_validate_close_contact.PDB_model_num
_pdbx_validate_close_contact.auth_atom_id_1
_pdbx_validate_close_contact.auth_asym_id_1
_pdbx_validate_close_contact.auth_comp_id_1
_pdbx_validate_close_contact.auth_seq_id_1
_pdbx_validate_close_contact.PDB_ins_code_1
_pdbx_validate_close_contact.label_alt_id_1
_pdbx_validate_close_contact.auth_atom_id_2
_pdbx_validate_close_contact.auth_asym_id_2
_pdbx_validate_close_contact.auth_comp_id_2
_pdbx_validate_close_contact.auth_seq_id_2
_pdbx_validate_close_contact.PDB_ins_code_2
_pdbx_validate_close_contact.label_alt_id_2
_pdbx_validate_close_contact.dist
1 1 O4 A DT 1 ? ? O A HOH 201 ? ? 2.13
2 1 O B HOH 212 ? ? O B HOH 213 ? ? 2.14
3 1 O A HOH 230 ? ? O A HOH 232 ? ? 2.15
4 1 O A HOH 209 ? ? O A HOH 211 ? ? 2.15
#
_pdbx_validate_rmsd_bond.id 1
_pdbx_validate_rmsd_bond.PDB_model_num 1
_pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'"
_pdbx_validate_rmsd_bond.auth_asym_id_1 B
_pdbx_validate_rmsd_bond.auth_comp_id_1 DC
_pdbx_validate_rmsd_bond.auth_seq_id_1 23
_pdbx_validate_rmsd_bond.PDB_ins_code_1 ?
_pdbx_validate_rmsd_bond.label_alt_id_1 ?
_pdbx_validate_rmsd_bond.auth_atom_id_2 "C3'"
_pdbx_validate_rmsd_bond.auth_asym_id_2 B
_pdbx_validate_rmsd_bond.auth_comp_id_2 DC
_pdbx_validate_rmsd_bond.auth_seq_id_2 23
_pdbx_validate_rmsd_bond.PDB_ins_code_2 ?
_pdbx_validate_rmsd_bond.label_alt_id_2 ?
_pdbx_validate_rmsd_bond.bond_value 1.383
_pdbx_validate_rmsd_bond.bond_target_value 1.419
_pdbx_validate_rmsd_bond.bond_deviation -0.036
_pdbx_validate_rmsd_bond.bond_standard_deviation 0.006
_pdbx_validate_rmsd_bond.linker_flag N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 "O4'" A DA 13 ? ? "C1'" A DA 13 ? ? N9 A DA 13 ? ? 110.30 108.30 2.00 0.30 N
2 1 "O4'" B DA 26 ? ? "C1'" B DA 26 ? ? N9 B DA 26 ? ? 110.39 108.30 2.09 0.30 N
#
_pdbx_struct_special_symmetry.id 1
_pdbx_struct_special_symmetry.PDB_model_num 1
_pdbx_struct_special_symmetry.auth_asym_id B
_pdbx_struct_special_symmetry.auth_comp_id HOH
_pdbx_struct_special_symmetry.auth_seq_id 211
_pdbx_struct_special_symmetry.PDB_ins_code ?
_pdbx_struct_special_symmetry.label_asym_id M
_pdbx_struct_special_symmetry.label_comp_id HOH
_pdbx_struct_special_symmetry.label_seq_id .
#
_pdbx_entry_details.entry_id 5XEW
_pdbx_entry_details.nonpolymer_details
;The force field of Chro unit used in the refinement of NiII(Chro)2-DNA complex structure was generated using the atomic resolution crystal structure of NiII(Chro)2.
;
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.has_ligand_of_interest ?
#
loop_
_pdbx_distant_solvent_atoms.id
_pdbx_distant_solvent_atoms.PDB_model_num
_pdbx_distant_solvent_atoms.auth_atom_id
_pdbx_distant_solvent_atoms.label_alt_id
_pdbx_distant_solvent_atoms.auth_asym_id
_pdbx_distant_solvent_atoms.auth_comp_id
_pdbx_distant_solvent_atoms.auth_seq_id
_pdbx_distant_solvent_atoms.PDB_ins_code
_pdbx_distant_solvent_atoms.neighbor_macromolecule_distance
_pdbx_distant_solvent_atoms.neighbor_ligand_distance
1 1 O ? A HOH 242 ? . 6.11
2 1 O ? A HOH 245 ? . 7.00
3 1 O ? B HOH 243 ? 5.91 .
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 A DC 3 ? A DC 3
2 1 Y 1 B DC 16 ? B DC 3
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
1GL O1 O N N 1
1GL C1 C N S 2
1GL C2 C N N 3
1GL C3 C N R 4
1GL O3 O N N 5
1GL C4 C N R 6
1GL O4 O N N 7
1GL CME C N N 8
1GL C5 C N R 9
1GL O5 O N N 10
1GL C6 C N N 11
1GL HO1 H N N 12
1GL H1 H N N 13
1GL H2 H N N 14
1GL H22 H N N 15
1GL H3 H N N 16
1GL HO3 H N N 17
1GL H4 H N N 18
1GL HM41 H N N 19
1GL HM42 H N N 20
1GL HM43 H N N 21
1GL H5 H N N 22
1GL H61 H N N 23
1GL H62 H N N 24
1GL H63 H N N 25
ARI O1 O N N 26
ARI C1 C N R 27
ARI C2 C N N 28
ARI C3 C N N 29
ARI C4 C N R 30
ARI O4 O N N 31
ARI CME C N N 32
ARI CO4 C N N 33
ARI OC4 O N N 34
ARI C5 C N R 35
ARI O5 O N N 36
ARI C6 C N N 37
ARI HO1 H N N 38
ARI H1 H N N 39
ARI H2 H N N 40
ARI H22 H N N 41
ARI H3 H N N 42
ARI H32 H N N 43
ARI H4 H N N 44
ARI H41 H N N 45
ARI H42 H N N 46
ARI H43 H N N 47
ARI H5 H N N 48
ARI H61 H N N 49
ARI H62 H N N 50
ARI H63 H N N 51
CDR O1 O N N 52
CDR C1 C N R 53
CDR C2 C N N 54
CDR C3 C N N 55
CDR C4 C N S 56
CDR O4 O N N 57
CDR C5 C N R 58
CDR O5 O N N 59
CDR C6 C N N 60
CDR HO1 H N N 61
CDR H1 H N N 62
CDR H2 H N N 63
CDR H22 H N N 64
CDR H3 H N N 65
CDR H32 H N N 66
CDR H4 H N N 67
CDR HO4 H N N 68
CDR H5 H N N 69
CDR H61 H N N 70
CDR H62 H N N 71
CDR H63 H N N 72
CPH C1 C N N 73
CPH O1 O N N 74
CPH C2 C N S 75
CPH C3 C N R 76
CPH C4 C N N 77
CPH C5 C Y N 78
CPH C6 C Y N 79
CPH C7 C Y N 80
CPH C8 C Y N 81
CPH O8 O N N 82
CPH C9 C Y N 83
CPH O9 O N N 84
CPH "C1'" C N S 85
CPH "O1'" O N N 86
CPH C10 C Y N 87
CPH "C2'" C N N 88
CPH "O2'" O N N 89
CPH "C3'" C N S 90
CPH "O3'" O N N 91
CPH "C4'" C N R 92
CPH "O4'" O N N 93
CPH C4A C Y N 94
CPH "C5'" C N N 95
CPH C5A C Y N 96
CPH C8A C Y N 97
CPH C9A C Y N 98
CPH CC7 C N N 99
CPH O6 O N N 100
CPH O2 O N N 101
CPH CME C N N 102
CPH H2 H N N 103
CPH H3 H N N 104
CPH H4 H N N 105
CPH H4A H N N 106
CPH H5 H N N 107
CPH HO8 H N N 108
CPH HO9 H N N 109
CPH "H1'" H N N 110
CPH H10 H N N 111
CPH "H3'" H N N 112
CPH "HO3'" H N N 113
CPH "H4'" H N N 114
CPH "HO4'" H N N 115
CPH "H5'" H N N 116
CPH "H5'A" H N N 117
CPH "H5'B" H N N 118
CPH HC7 H N N 119
CPH HC7A H N N 120
CPH HC7B H N N 121
CPH HO6 H N N 122
CPH HO2 H N N 123
CPH HME H N N 124
CPH HMEA H N N 125
CPH HMEB H N N 126
DA OP3 O N N 127
DA P P N N 128
DA OP1 O N N 129
DA OP2 O N N 130
DA "O5'" O N N 131
DA "C5'" C N N 132
DA "C4'" C N R 133
DA "O4'" O N N 134
DA "C3'" C N S 135
DA "O3'" O N N 136
DA "C2'" C N N 137
DA "C1'" C N R 138
DA N9 N Y N 139
DA C8 C Y N 140
DA N7 N Y N 141
DA C5 C Y N 142
DA C6 C Y N 143
DA N6 N N N 144
DA N1 N Y N 145
DA C2 C Y N 146
DA N3 N Y N 147
DA C4 C Y N 148
DA HOP3 H N N 149
DA HOP2 H N N 150
DA "H5'" H N N 151
DA "H5''" H N N 152
DA "H4'" H N N 153
DA "H3'" H N N 154
DA "HO3'" H N N 155
DA "H2'" H N N 156
DA "H2''" H N N 157
DA "H1'" H N N 158
DA H8 H N N 159
DA H61 H N N 160
DA H62 H N N 161
DA H2 H N N 162
DC OP3 O N N 163
DC P P N N 164
DC OP1 O N N 165
DC OP2 O N N 166
DC "O5'" O N N 167
DC "C5'" C N N 168
DC "C4'" C N R 169
DC "O4'" O N N 170
DC "C3'" C N S 171
DC "O3'" O N N 172
DC "C2'" C N N 173
DC "C1'" C N R 174
DC N1 N N N 175
DC C2 C N N 176
DC O2 O N N 177
DC N3 N N N 178
DC C4 C N N 179
DC N4 N N N 180
DC C5 C N N 181
DC C6 C N N 182
DC HOP3 H N N 183
DC HOP2 H N N 184
DC "H5'" H N N 185
DC "H5''" H N N 186
DC "H4'" H N N 187
DC "H3'" H N N 188
DC "HO3'" H N N 189
DC "H2'" H N N 190
DC "H2''" H N N 191
DC "H1'" H N N 192
DC H41 H N N 193
DC H42 H N N 194
DC H5 H N N 195
DC H6 H N N 196
DG OP3 O N N 197
DG P P N N 198
DG OP1 O N N 199
DG OP2 O N N 200
DG "O5'" O N N 201
DG "C5'" C N N 202
DG "C4'" C N R 203
DG "O4'" O N N 204
DG "C3'" C N S 205
DG "O3'" O N N 206
DG "C2'" C N N 207
DG "C1'" C N R 208
DG N9 N Y N 209
DG C8 C Y N 210
DG N7 N Y N 211
DG C5 C Y N 212
DG C6 C N N 213
DG O6 O N N 214
DG N1 N N N 215
DG C2 C N N 216
DG N2 N N N 217
DG N3 N N N 218
DG C4 C Y N 219
DG HOP3 H N N 220
DG HOP2 H N N 221
DG "H5'" H N N 222
DG "H5''" H N N 223
DG "H4'" H N N 224
DG "H3'" H N N 225
DG "HO3'" H N N 226
DG "H2'" H N N 227
DG "H2''" H N N 228
DG "H1'" H N N 229
DG H8 H N N 230
DG H1 H N N 231
DG H21 H N N 232
DG H22 H N N 233
DT OP3 O N N 234
DT P P N N 235
DT OP1 O N N 236
DT OP2 O N N 237
DT "O5'" O N N 238
DT "C5'" C N N 239
DT "C4'" C N R 240
DT "O4'" O N N 241
DT "C3'" C N S 242
DT "O3'" O N N 243
DT "C2'" C N N 244
DT "C1'" C N R 245
DT N1 N N N 246
DT C2 C N N 247
DT O2 O N N 248
DT N3 N N N 249
DT C4 C N N 250
DT O4 O N N 251
DT C5 C N N 252
DT C7 C N N 253
DT C6 C N N 254
DT HOP3 H N N 255
DT HOP2 H N N 256
DT "H5'" H N N 257
DT "H5''" H N N 258
DT "H4'" H N N 259
DT "H3'" H N N 260
DT "HO3'" H N N 261
DT "H2'" H N N 262
DT "H2''" H N N 263
DT "H1'" H N N 264
DT H3 H N N 265
DT H71 H N N 266
DT H72 H N N 267
DT H73 H N N 268
DT H6 H N N 269
ERI O1 O N N 270
ERI C1 C N R 271
ERI C2 C N N 272
ERI C3 C N S 273
ERI O3 O N N 274
ERI CC3 C N N 275
ERI C4 C N S 276
ERI O4 O N N 277
ERI CME C N N 278
ERI CO4 C N N 279
ERI OC4 O N N 280
ERI C5 C N S 281
ERI O5 O N N 282
ERI C6 C N N 283
ERI HO1 H N N 284
ERI H1 H N N 285
ERI H21 H N N 286
ERI H22 H N N 287
ERI HO3 H N N 288
ERI H31 H N N 289
ERI H32 H N N 290
ERI H33 H N N 291
ERI H4 H N N 292
ERI H41 H N N 293
ERI H42 H N N 294
ERI H43 H N N 295
ERI H5 H N N 296
ERI H61 H N N 297
ERI H62 H N N 298
ERI H63 H N N 299
HOH O O N N 300
HOH H1 H N N 301
HOH H2 H N N 302
NI NI NI N N 303
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1GL O1 C1 sing N N 1
1GL O1 HO1 sing N N 2
1GL C1 C2 sing N N 3
1GL C1 O5 sing N N 4
1GL C1 H1 sing N N 5
1GL C2 C3 sing N N 6
1GL C2 H2 sing N N 7
1GL C2 H22 sing N N 8
1GL C3 O3 sing N N 9
1GL C3 C4 sing N N 10
1GL C3 H3 sing N N 11
1GL O3 HO3 sing N N 12
1GL C4 O4 sing N N 13
1GL C4 C5 sing N N 14
1GL C4 H4 sing N N 15
1GL O4 CME sing N N 16
1GL CME HM41 sing N N 17
1GL CME HM42 sing N N 18
1GL CME HM43 sing N N 19
1GL C5 O5 sing N N 20
1GL C5 C6 sing N N 21
1GL C5 H5 sing N N 22
1GL C6 H61 sing N N 23
1GL C6 H62 sing N N 24
1GL C6 H63 sing N N 25
ARI O1 C1 sing N N 26
ARI O1 HO1 sing N N 27
ARI C1 C2 sing N N 28
ARI C1 O5 sing N N 29
ARI C1 H1 sing N N 30
ARI C2 C3 sing N N 31
ARI C2 H2 sing N N 32
ARI C2 H22 sing N N 33
ARI C3 C4 sing N N 34
ARI C3 H3 sing N N 35
ARI C3 H32 sing N N 36
ARI C4 O4 sing N N 37
ARI C4 C5 sing N N 38
ARI C4 H4 sing N N 39
ARI O4 CO4 sing N N 40
ARI CME CO4 sing N N 41
ARI CME H41 sing N N 42
ARI CME H42 sing N N 43
ARI CME H43 sing N N 44
ARI CO4 OC4 doub N N 45
ARI C5 O5 sing N N 46
ARI C5 C6 sing N N 47
ARI C5 H5 sing N N 48
ARI C6 H61 sing N N 49
ARI C6 H62 sing N N 50
ARI C6 H63 sing N N 51
CDR O1 C1 sing N N 52
CDR O1 HO1 sing N N 53
CDR C1 C2 sing N N 54
CDR C1 O5 sing N N 55
CDR C1 H1 sing N N 56
CDR C2 C3 sing N N 57
CDR C2 H2 sing N N 58
CDR C2 H22 sing N N 59
CDR C3 C4 sing N N 60
CDR C3 H3 sing N N 61
CDR C3 H32 sing N N 62
CDR C4 O4 sing N N 63
CDR C4 C5 sing N N 64
CDR C4 H4 sing N N 65
CDR O4 HO4 sing N N 66
CDR C5 O5 sing N N 67
CDR C5 C6 sing N N 68
CDR C5 H5 sing N N 69
CDR C6 H61 sing N N 70
CDR C6 H62 sing N N 71
CDR C6 H63 sing N N 72
CPH O1 C1 doub N N 73
CPH C9A C1 sing N N 74
CPH C1 C2 sing N N 75
CPH C2 O2 sing N N 76
CPH C2 C3 sing N N 77
CPH C2 H2 sing N N 78
CPH C3 C4 sing N N 79
CPH C3 "C1'" sing N N 80
CPH C3 H3 sing N N 81
CPH C4A C4 sing N N 82
CPH C4 H4 sing N N 83
CPH C4 H4A sing N N 84
CPH C6 C5 doub Y N 85
CPH C5 C5A sing Y N 86
CPH C5 H5 sing N N 87
CPH C7 C6 sing Y N 88
CPH O6 C6 sing N N 89
CPH CC7 C7 sing N N 90
CPH C7 C8 doub Y N 91
CPH O8 C8 sing N N 92
CPH C8 C8A sing Y N 93
CPH O8 HO8 sing N N 94
CPH O9 C9 sing N N 95
CPH C8A C9 doub Y N 96
CPH C9 C9A sing Y N 97
CPH O9 HO9 sing N N 98
CPH "C2'" "C1'" sing N N 99
CPH "C1'" "O1'" sing N N 100
CPH "C1'" "H1'" sing N N 101
CPH "O1'" CME sing N N 102
CPH C5A C10 doub Y N 103
CPH C10 C4A sing Y N 104
CPH C10 H10 sing N N 105
CPH "O2'" "C2'" doub N N 106
CPH "C2'" "C3'" sing N N 107
CPH "O3'" "C3'" sing N N 108
CPH "C3'" "C4'" sing N N 109
CPH "C3'" "H3'" sing N N 110
CPH "O3'" "HO3'" sing N N 111
CPH "O4'" "C4'" sing N N 112
CPH "C4'" "C5'" sing N N 113
CPH "C4'" "H4'" sing N N 114
CPH "O4'" "HO4'" sing N N 115
CPH C9A C4A doub Y N 116
CPH "C5'" "H5'" sing N N 117
CPH "C5'" "H5'A" sing N N 118
CPH "C5'" "H5'B" sing N N 119
CPH C8A C5A sing Y N 120
CPH CC7 HC7 sing N N 121
CPH CC7 HC7A sing N N 122
CPH CC7 HC7B sing N N 123
CPH O6 HO6 sing N N 124
CPH O2 HO2 sing N N 125
CPH CME HME sing N N 126
CPH CME HMEA sing N N 127
CPH CME HMEB sing N N 128
DA OP3 P sing N N 129
DA OP3 HOP3 sing N N 130
DA P OP1 doub N N 131
DA P OP2 sing N N 132
DA P "O5'" sing N N 133
DA OP2 HOP2 sing N N 134
DA "O5'" "C5'" sing N N 135
DA "C5'" "C4'" sing N N 136
DA "C5'" "H5'" sing N N 137
DA "C5'" "H5''" sing N N 138
DA "C4'" "O4'" sing N N 139
DA "C4'" "C3'" sing N N 140
DA "C4'" "H4'" sing N N 141
DA "O4'" "C1'" sing N N 142
DA "C3'" "O3'" sing N N 143
DA "C3'" "C2'" sing N N 144
DA "C3'" "H3'" sing N N 145
DA "O3'" "HO3'" sing N N 146
DA "C2'" "C1'" sing N N 147
DA "C2'" "H2'" sing N N 148
DA "C2'" "H2''" sing N N 149
DA "C1'" N9 sing N N 150
DA "C1'" "H1'" sing N N 151
DA N9 C8 sing Y N 152
DA N9 C4 sing Y N 153
DA C8 N7 doub Y N 154
DA C8 H8 sing N N 155
DA N7 C5 sing Y N 156
DA C5 C6 sing Y N 157
DA C5 C4 doub Y N 158
DA C6 N6 sing N N 159
DA C6 N1 doub Y N 160
DA N6 H61 sing N N 161
DA N6 H62 sing N N 162
DA N1 C2 sing Y N 163
DA C2 N3 doub Y N 164
DA C2 H2 sing N N 165
DA N3 C4 sing Y N 166
DC OP3 P sing N N 167
DC OP3 HOP3 sing N N 168
DC P OP1 doub N N 169
DC P OP2 sing N N 170
DC P "O5'" sing N N 171
DC OP2 HOP2 sing N N 172
DC "O5'" "C5'" sing N N 173
DC "C5'" "C4'" sing N N 174
DC "C5'" "H5'" sing N N 175
DC "C5'" "H5''" sing N N 176
DC "C4'" "O4'" sing N N 177
DC "C4'" "C3'" sing N N 178
DC "C4'" "H4'" sing N N 179
DC "O4'" "C1'" sing N N 180
DC "C3'" "O3'" sing N N 181
DC "C3'" "C2'" sing N N 182
DC "C3'" "H3'" sing N N 183
DC "O3'" "HO3'" sing N N 184
DC "C2'" "C1'" sing N N 185
DC "C2'" "H2'" sing N N 186
DC "C2'" "H2''" sing N N 187
DC "C1'" N1 sing N N 188
DC "C1'" "H1'" sing N N 189
DC N1 C2 sing N N 190
DC N1 C6 sing N N 191
DC C2 O2 doub N N 192
DC C2 N3 sing N N 193
DC N3 C4 doub N N 194
DC C4 N4 sing N N 195
DC C4 C5 sing N N 196
DC N4 H41 sing N N 197
DC N4 H42 sing N N 198
DC C5 C6 doub N N 199
DC C5 H5 sing N N 200
DC C6 H6 sing N N 201
DG OP3 P sing N N 202
DG OP3 HOP3 sing N N 203
DG P OP1 doub N N 204
DG P OP2 sing N N 205
DG P "O5'" sing N N 206
DG OP2 HOP2 sing N N 207
DG "O5'" "C5'" sing N N 208
DG "C5'" "C4'" sing N N 209
DG "C5'" "H5'" sing N N 210
DG "C5'" "H5''" sing N N 211
DG "C4'" "O4'" sing N N 212
DG "C4'" "C3'" sing N N 213
DG "C4'" "H4'" sing N N 214
DG "O4'" "C1'" sing N N 215
DG "C3'" "O3'" sing N N 216
DG "C3'" "C2'" sing N N 217
DG "C3'" "H3'" sing N N 218
DG "O3'" "HO3'" sing N N 219
DG "C2'" "C1'" sing N N 220
DG "C2'" "H2'" sing N N 221
DG "C2'" "H2''" sing N N 222
DG "C1'" N9 sing N N 223
DG "C1'" "H1'" sing N N 224
DG N9 C8 sing Y N 225
DG N9 C4 sing Y N 226
DG C8 N7 doub Y N 227
DG C8 H8 sing N N 228
DG N7 C5 sing Y N 229
DG C5 C6 sing N N 230
DG C5 C4 doub Y N 231
DG C6 O6 doub N N 232
DG C6 N1 sing N N 233
DG N1 C2 sing N N 234
DG N1 H1 sing N N 235
DG C2 N2 sing N N 236
DG C2 N3 doub N N 237
DG N2 H21 sing N N 238
DG N2 H22 sing N N 239
DG N3 C4 sing N N 240
DT OP3 P sing N N 241
DT OP3 HOP3 sing N N 242
DT P OP1 doub N N 243
DT P OP2 sing N N 244
DT P "O5'" sing N N 245
DT OP2 HOP2 sing N N 246
DT "O5'" "C5'" sing N N 247
DT "C5'" "C4'" sing N N 248
DT "C5'" "H5'" sing N N 249
DT "C5'" "H5''" sing N N 250
DT "C4'" "O4'" sing N N 251
DT "C4'" "C3'" sing N N 252
DT "C4'" "H4'" sing N N 253
DT "O4'" "C1'" sing N N 254
DT "C3'" "O3'" sing N N 255
DT "C3'" "C2'" sing N N 256
DT "C3'" "H3'" sing N N 257
DT "O3'" "HO3'" sing N N 258
DT "C2'" "C1'" sing N N 259
DT "C2'" "H2'" sing N N 260
DT "C2'" "H2''" sing N N 261
DT "C1'" N1 sing N N 262
DT "C1'" "H1'" sing N N 263
DT N1 C2 sing N N 264
DT N1 C6 sing N N 265
DT C2 O2 doub N N 266
DT C2 N3 sing N N 267
DT N3 C4 sing N N 268
DT N3 H3 sing N N 269
DT C4 O4 doub N N 270
DT C4 C5 sing N N 271
DT C5 C7 sing N N 272
DT C5 C6 doub N N 273
DT C7 H71 sing N N 274
DT C7 H72 sing N N 275
DT C7 H73 sing N N 276
DT C6 H6 sing N N 277
ERI O1 C1 sing N N 278
ERI O1 HO1 sing N N 279
ERI C1 C2 sing N N 280
ERI C1 O5 sing N N 281
ERI C1 H1 sing N N 282
ERI C2 C3 sing N N 283
ERI C2 H21 sing N N 284
ERI C2 H22 sing N N 285
ERI C3 O3 sing N N 286
ERI C3 CC3 sing N N 287
ERI C3 C4 sing N N 288
ERI O3 HO3 sing N N 289
ERI CC3 H31 sing N N 290
ERI CC3 H32 sing N N 291
ERI CC3 H33 sing N N 292
ERI C4 O4 sing N N 293
ERI C4 C5 sing N N 294
ERI C4 H4 sing N N 295
ERI O4 CO4 sing N N 296
ERI CME CO4 sing N N 297
ERI CME H41 sing N N 298
ERI CME H42 sing N N 299
ERI CME H43 sing N N 300
ERI CO4 OC4 doub N N 301
ERI C5 O5 sing N N 302
ERI C5 C6 sing N N 303
ERI C5 H5 sing N N 304
ERI C6 H61 sing N N 305
ERI C6 H62 sing N N 306
ERI C6 H63 sing N N 307
HOH O H1 sing N N 308
HOH O H2 sing N N 309
#
_ndb_struct_conf_na.entry_id 5XEW
_ndb_struct_conf_na.feature 'double helix'
#
loop_
_ndb_struct_na_base_pair.model_number
_ndb_struct_na_base_pair.i_label_asym_id
_ndb_struct_na_base_pair.i_label_comp_id
_ndb_struct_na_base_pair.i_label_seq_id
_ndb_struct_na_base_pair.i_symmetry
_ndb_struct_na_base_pair.j_label_asym_id
_ndb_struct_na_base_pair.j_label_comp_id
_ndb_struct_na_base_pair.j_label_seq_id
_ndb_struct_na_base_pair.j_symmetry
_ndb_struct_na_base_pair.shear
_ndb_struct_na_base_pair.stretch
_ndb_struct_na_base_pair.stagger
_ndb_struct_na_base_pair.buckle
_ndb_struct_na_base_pair.propeller
_ndb_struct_na_base_pair.opening
_ndb_struct_na_base_pair.pair_number
_ndb_struct_na_base_pair.pair_name
_ndb_struct_na_base_pair.i_auth_asym_id
_ndb_struct_na_base_pair.i_auth_seq_id
_ndb_struct_na_base_pair.i_PDB_ins_code
_ndb_struct_na_base_pair.j_auth_asym_id
_ndb_struct_na_base_pair.j_auth_seq_id
_ndb_struct_na_base_pair.j_PDB_ins_code
_ndb_struct_na_base_pair.hbond_type_28
_ndb_struct_na_base_pair.hbond_type_12
1 A DT 1 1_555 B DA 13 1_555 -0.467 3.776 0.726 -15.578 9.026 -63.090 1 A_DT1:DA26_B A 1 ? B 26 ? 23 3
1 A DT 2 1_555 B DA 12 1_555 -0.634 0.029 -0.010 -1.366 -4.669 -7.748 2 A_DT2:DA25_B A 2 ? B 25 ? 20 1
1 A DC 4 1_555 B DG 11 1_555 0.023 -0.185 -0.062 5.118 -15.273 -0.999 3 A_DC4:DG24_B A 4 ? B 24 ? 19 1
1 A DG 5 1_555 B DC 10 1_555 -0.010 -0.149 0.105 1.962 -12.407 0.951 4 A_DG5:DC23_B A 5 ? B 23 ? 19 1
1 A DG 8 1_555 B DC 9 1_555 -0.259 -0.165 0.159 2.918 -9.691 -0.357 5 A_DG8:DC22_B A 8 ? B 22 ? 19 1
1 A DC 9 1_555 B DG 8 1_555 0.292 -0.157 0.183 -2.173 -10.388 -0.295 6 A_DC9:DG21_B A 9 ? B 21 ? 19 1
1 A DC 10 1_555 B DG 5 1_555 0.000 -0.141 0.041 -0.883 -12.671 1.477 7 A_DC10:DG18_B A 10 ? B 18 ? 19 1
1 A DG 11 1_555 B DC 4 1_555 -0.123 -0.248 -0.022 -3.707 -14.534 0.374 8 A_DG11:DC17_B A 11 ? B 17 ? 19 1
1 A DA 12 1_555 B DT 2 1_555 0.679 -0.124 -0.311 -5.895 -0.762 -8.328 9 A_DA12:DT15_B A 12 ? B 15 ? 20 1
1 A DA 13 1_555 B DT 1 1_555 1.019 -3.481 -0.202 10.277 -5.553 71.782 10 A_DA13:DT14_B A 13 ? B 14 ? 23 3
#
loop_
_ndb_struct_na_base_pair_step.model_number
_ndb_struct_na_base_pair_step.i_label_asym_id_1
_ndb_struct_na_base_pair_step.i_label_comp_id_1
_ndb_struct_na_base_pair_step.i_label_seq_id_1
_ndb_struct_na_base_pair_step.i_symmetry_1
_ndb_struct_na_base_pair_step.j_label_asym_id_1
_ndb_struct_na_base_pair_step.j_label_comp_id_1
_ndb_struct_na_base_pair_step.j_label_seq_id_1
_ndb_struct_na_base_pair_step.j_symmetry_1
_ndb_struct_na_base_pair_step.i_label_asym_id_2
_ndb_struct_na_base_pair_step.i_label_comp_id_2
_ndb_struct_na_base_pair_step.i_label_seq_id_2
_ndb_struct_na_base_pair_step.i_symmetry_2
_ndb_struct_na_base_pair_step.j_label_asym_id_2
_ndb_struct_na_base_pair_step.j_label_comp_id_2
_ndb_struct_na_base_pair_step.j_label_seq_id_2
_ndb_struct_na_base_pair_step.j_symmetry_2
_ndb_struct_na_base_pair_step.shift
_ndb_struct_na_base_pair_step.slide
_ndb_struct_na_base_pair_step.rise
_ndb_struct_na_base_pair_step.tilt
_ndb_struct_na_base_pair_step.roll
_ndb_struct_na_base_pair_step.twist
_ndb_struct_na_base_pair_step.x_displacement
_ndb_struct_na_base_pair_step.y_displacement
_ndb_struct_na_base_pair_step.helical_rise
_ndb_struct_na_base_pair_step.inclination
_ndb_struct_na_base_pair_step.tip
_ndb_struct_na_base_pair_step.helical_twist
_ndb_struct_na_base_pair_step.step_number
_ndb_struct_na_base_pair_step.step_name
_ndb_struct_na_base_pair_step.i_auth_asym_id_1
_ndb_struct_na_base_pair_step.i_auth_seq_id_1
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1
_ndb_struct_na_base_pair_step.j_auth_asym_id_1
_ndb_struct_na_base_pair_step.j_auth_seq_id_1
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1
_ndb_struct_na_base_pair_step.i_auth_asym_id_2
_ndb_struct_na_base_pair_step.i_auth_seq_id_2
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2
_ndb_struct_na_base_pair_step.j_auth_asym_id_2
_ndb_struct_na_base_pair_step.j_auth_seq_id_2
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2
1 A DT 1 1_555 B DA 13 1_555 A DT 2 1_555 B DA 12 1_555 -0.973 3.230 3.310 3.302 4.217 -21.106 -10.110 -1.359 2.738
-11.280 8.832 -21.767 1 AA_DT1DT2:DA25DA26_BB A 1 ? B 26 ? A 2 ? B 25 ?
1 A DT 2 1_555 B DA 12 1_555 A DC 4 1_555 B DG 11 1_555 0.348 -0.181 3.268 1.661 -4.814 35.271 0.407 -0.326 3.276
-7.894 -2.724 35.625 2 AA_DT2DC4:DG24DA25_BB A 2 ? B 25 ? A 4 ? B 24 ?
1 A DC 4 1_555 B DG 11 1_555 A DG 5 1_555 B DC 10 1_555 0.758 0.191 3.521 -0.927 5.932 38.984 -0.472 -1.242 3.493
8.825 1.379 39.426 3 AA_DC4DG5:DC23DG24_BB A 4 ? B 24 ? A 5 ? B 23 ?
1 A DG 5 1_555 B DC 10 1_555 A DG 8 1_555 B DC 9 1_555 1.922 -2.001 3.145 0.037 10.526 18.875 -8.736 -5.119 1.790
29.326 -0.104 21.588 4 AA_DG5DG8:DC22DC23_BB A 5 ? B 23 ? A 8 ? B 22 ?
1 A DG 8 1_555 B DC 9 1_555 A DC 9 1_555 B DG 8 1_555 -0.020 -2.104 3.440 -0.223 -3.449 36.602 -2.828 -0.001 3.616
-5.476 0.354 36.759 5 AA_DG8DC9:DG21DC22_BB A 8 ? B 22 ? A 9 ? B 21 ?
1 A DC 9 1_555 B DG 8 1_555 A DC 10 1_555 B DG 5 1_555 -1.915 -2.007 3.142 0.450 9.949 18.491 -8.893 5.412 1.788
28.443 -1.288 20.982 6 AA_DC9DC10:DG18DG21_BB A 9 ? B 21 ? A 10 ? B 18 ?
1 A DC 10 1_555 B DG 5 1_555 A DG 11 1_555 B DC 4 1_555 -0.680 0.293 3.525 0.334 5.809 38.639 -0.320 1.061 3.525
8.719 -0.502 39.058 7 AA_DC10DG11:DC17DG18_BB A 10 ? B 18 ? A 11 ? B 17 ?
1 A DG 11 1_555 B DC 4 1_555 A DA 12 1_555 B DT 2 1_555 -0.422 0.001 3.499 1.911 -4.735 37.520 0.650 0.912 3.449
-7.319 -2.954 37.853 8 AA_DG11DA12:DT15DC17_BB A 11 ? B 17 ? A 12 ? B 15 ?
1 A DA 12 1_555 B DT 2 1_555 A DA 13 1_555 B DT 1 1_555 -2.098 3.458 -2.465 171.648 -26.689 -126.817 -1.793 -1.458 -1.040
13.396 86.152 -177.186 9 AA_DA12DA13:DT14DT15_BB A 12 ? B 15 ? A 13 ? B 14 ?
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
2 CDR 1 n
2 CDR 2 n
2 ERI 3 n
3 ARI 1 n
3 1GL 2 n
#
_atom_sites.entry_id 5XEW
_atom_sites.fract_transf_matrix[1][1] 0.020708
_atom_sites.fract_transf_matrix[1][2] 0.011956
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.023911
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.011997
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
N
NI
O
P
#
loop_