data_5XEW # _entry.id 5XEW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5XEW pdb_00005xew 10.2210/pdb5xew/pdb WWPDB D_1300003408 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-06-21 2 'Structure model' 1 1 2017-06-28 3 'Structure model' 1 2 2017-07-19 4 'Structure model' 1 3 2018-05-16 5 'Structure model' 2 0 2020-07-29 6 'Structure model' 2 1 2024-03-27 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 5 'Structure model' 'Atomic model' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Structure summary' 9 6 'Structure model' 'Data collection' 10 6 'Structure model' 'Database references' 11 6 'Structure model' 'Derived calculations' 12 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation 3 4 'Structure model' diffrn_source 4 4 'Structure model' struct_ref_seq 5 5 'Structure model' atom_site 6 5 'Structure model' chem_comp 7 5 'Structure model' entity 8 5 'Structure model' pdbx_branch_scheme 9 5 'Structure model' pdbx_chem_comp_identifier 10 5 'Structure model' pdbx_entity_branch 11 5 'Structure model' pdbx_entity_branch_descriptor 12 5 'Structure model' pdbx_entity_branch_link 13 5 'Structure model' pdbx_entity_branch_list 14 5 'Structure model' pdbx_entity_nonpoly 15 5 'Structure model' pdbx_nonpoly_scheme 16 5 'Structure model' pdbx_struct_assembly_gen 17 5 'Structure model' pdbx_struct_conn_angle 18 5 'Structure model' pdbx_struct_special_symmetry 19 5 'Structure model' struct_asym 20 5 'Structure model' struct_conn 21 5 'Structure model' struct_conn_type 22 5 'Structure model' struct_site 23 5 'Structure model' struct_site_gen 24 6 'Structure model' chem_comp 25 6 'Structure model' chem_comp_atom 26 6 'Structure model' chem_comp_bond 27 6 'Structure model' database_2 28 6 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_id_ASTM' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.title' 5 3 'Structure model' '_citation.journal_volume' 6 3 'Structure model' '_citation.page_first' 7 3 'Structure model' '_citation.page_last' 8 4 'Structure model' '_diffrn_source.pdbx_synchrotron_beamline' 9 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 10 4 'Structure model' '_struct_ref_seq.db_align_end' 11 5 'Structure model' '_atom_site.B_iso_or_equiv' 12 5 'Structure model' '_atom_site.Cartn_x' 13 5 'Structure model' '_atom_site.Cartn_y' 14 5 'Structure model' '_atom_site.Cartn_z' 15 5 'Structure model' '_atom_site.auth_asym_id' 16 5 'Structure model' '_atom_site.auth_atom_id' 17 5 'Structure model' '_atom_site.auth_comp_id' 18 5 'Structure model' '_atom_site.auth_seq_id' 19 5 'Structure model' '_atom_site.label_asym_id' 20 5 'Structure model' '_atom_site.label_atom_id' 21 5 'Structure model' '_atom_site.label_comp_id' 22 5 'Structure model' '_atom_site.label_entity_id' 23 5 'Structure model' '_atom_site.type_symbol' 24 5 'Structure model' '_chem_comp.mon_nstd_flag' 25 5 'Structure model' '_chem_comp.name' 26 5 'Structure model' '_chem_comp.type' 27 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 28 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 29 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 30 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 31 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 32 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 33 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 34 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 35 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 36 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 37 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 38 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 39 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 40 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 41 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 42 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 43 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 44 5 'Structure model' '_pdbx_struct_conn_angle.value' 45 5 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id' 46 5 'Structure model' '_struct_conn.conn_type_id' 47 5 'Structure model' '_struct_conn.id' 48 5 'Structure model' '_struct_conn.pdbx_dist_value' 49 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 50 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 51 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 52 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 53 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 54 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 55 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 56 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 57 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 58 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 59 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 60 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 61 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 62 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 63 5 'Structure model' '_struct_conn_type.id' 64 6 'Structure model' '_chem_comp.pdbx_synonyms' 65 6 'Structure model' '_database_2.pdbx_DOI' 66 6 'Structure model' '_database_2.pdbx_database_accession' 67 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2017-06-21 _pdbx_database_PDB_obs_spr.pdb_id 5XEW _pdbx_database_PDB_obs_spr.replace_pdb_id 5ERZ _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5XEW _pdbx_database_status.recvd_initial_deposition_date 2017-04-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 5ERZ unspecified PDB . 5ES0 unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Tseng, W.H.' 1 ? 'Wu, P.C.' 2 ? 'Hou, M.H.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Angew. Chem. Int. Ed. Engl.' _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 56 _citation.language ? _citation.page_first 8761 _citation.page_last 8765 _citation.title 'Induced-Fit Recognition of CCG Trinucleotide Repeats by a Nickel-Chromomycin Complex Resulting in Large-Scale DNA Deformation' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.201703989 _citation.pdbx_database_id_PubMed 28544401 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tseng, W.H.' 1 ? primary 'Chang, C.K.' 2 ? primary 'Wu, P.C.' 3 ? primary 'Hu, N.J.' 4 ? primary 'Lee, G.H.' 5 ? primary 'Tzeng, C.C.' 6 ? primary 'Neidle, S.' 7 ? primary 'Hou, M.H.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*TP*CP*CP*GP*CP*CP*GP*CP*CP*GP*AP*A)-3') ; 3912.550 2 ? ? ? ? 2 branched man ;3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose-(1-3)-(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol-(1-3)-(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol ; 432.506 2 ? ? ? ? 3 branched man '2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose-(1-3)-(2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetate' 318.363 2 ? ? ? ? 4 non-polymer syn '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' 420.410 2 ? ? ? ? 5 non-polymer syn 'NICKEL (II) ION' 58.693 3 ? ? ? ? 6 water nat water 18.015 89 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DT)(DC)(DC)(DG)(DC)(DC)(DG)(DC)(DC)(DG)(DA)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TTCCGCCGCCGAA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' CPH 5 'NICKEL (II) ION' NI 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DC n 1 4 DC n 1 5 DG n 1 6 DC n 1 7 DC n 1 8 DG n 1 9 DC n 1 10 DC n 1 11 DG n 1 12 DA n 1 13 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 13 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'WURCS=2.0/2,3,2/[ad222m-1b_1-5][ad611m-1a_1-5_3*C_4*OCC/3=O]/1-1-2/a3-b1_b3-c1' WURCS PDB2Glycan 1.1.0 2 2 '[][b-D-2,6-deoxy-Glcp]{[(3+1)][b-D-2,6-deoxy-Glcp]{[(3+1)][a-L-2,6-deoxy-Glcp4Ac]{}}}' LINUCS PDB-CARE ? 3 3 'WURCS=2.0/2,2,1/[ad212m-1b_1-5_4*OCC/3=O][ad112m-1a_1-5_4*OC]/1-2/a3-b1' WURCS PDB2Glycan 1.1.0 4 3 '[][b-D-2-deoxy-Fucp4Ac]{[(3+1)][a-D-2-deoxy-Fucp4Me]{}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 1 CDR C3 H3 2 CDR O1 HO1 sing ? 2 2 2 CDR C3 H3 3 ERI O1 HO1 sing ? 3 3 1 ARI C3 H3 2 1GL O1 HO1 sing ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1GL 'D-saccharide, alpha linking' . 2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose ;4-O-METHYL-2,6-DIDEOXY-ALPHA-D-GALACTO-HEXOPYRANOSE; 2-deoxy-4-O-methyl-alpha-D-fucopyranose; 2,6-dideoxy-4-O-methyl-alpha-D-galactose; 2,6-dideoxy-4-O-methyl-D-galactose; 2,6-dideoxy-4-O-methyl-galactose ; 'C7 H14 O4' 162.184 ARI 'D-saccharide, beta linking' . '(2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetate' '[O4]-ACETOXY-2,3-DIDEOXYFUCOSE' 'C8 H14 O4' 174.194 CDR 'D-saccharide, beta linking' . '(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol' 2,3-DIDEOXYFUCOSE 'C6 H12 O3' 132.158 CPH non-polymer . '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' None 'C21 H24 O9' 420.410 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 ERI 'L-saccharide, alpha linking' n 3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose ;4-O-ACETYL-2,6-DIDEOXY-3-C-METHYL-BETA-L-ARABINO-HEXOPYRANOSE; 3-C-methyl-4-O-acetyl-alpha-L-Olivose; 3-C-methyl-4-O-acetyl-L-Olivose; 3-C-methyl-4-O-acetyl-Olivose ; 'C9 H16 O5' 204.220 HOH non-polymer . WATER ? 'H2 O' 18.015 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 # _pdbx_chem_comp_identifier.comp_id 1GL _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1.0 _pdbx_chem_comp_identifier.identifier a-D-2-deoxy-Fucp4OMe # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT Td A . n A 1 2 DT 2 2 2 DT Td A . n A 1 3 DC 3 3 ? ? ? A . n A 1 4 DC 4 4 4 DC Cd A . n A 1 5 DG 5 5 5 DG Gd A . n A 1 6 DC 6 6 6 DC Cd A . n A 1 7 DC 7 7 7 DC Cd A . n A 1 8 DG 8 8 8 DG Gd A . n A 1 9 DC 9 9 9 DC Cd A . n A 1 10 DC 10 10 10 DC Cd A . n A 1 11 DG 11 11 11 DG Gd A . n A 1 12 DA 12 12 12 DA Ad A . n A 1 13 DA 13 13 13 DA Ad A . n B 1 1 DT 1 14 14 DT Td B . n B 1 2 DT 2 15 15 DT Td B . n B 1 3 DC 3 16 ? ? ? B . n B 1 4 DC 4 17 17 DC Cd B . n B 1 5 DG 5 18 18 DG Gd B . n B 1 6 DC 6 19 19 DC Cd B . n B 1 7 DC 7 20 20 DC Cd B . n B 1 8 DG 8 21 21 DG Gd B . n B 1 9 DC 9 22 22 DC Cd B . n B 1 10 DC 10 23 23 DC Cd B . n B 1 11 DG 11 24 24 DG Gd B . n B 1 12 DA 12 25 25 DA Ad B . n B 1 13 DA 13 26 26 DA Ad B . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 CDR 1 C CDR 1 C CDR 57 n C 2 CDR 2 C CDR 2 C CDR 58 n C 2 ERI 3 C ERI 3 C ERI 59 n D 3 ARI 1 D ARI 1 C ARI 61 n D 3 1GL 2 D 1GL 2 C 1GL 60 n E 3 ARI 1 E ARI 1 C ARI 55 n E 3 1GL 2 E 1GL 2 C 1GL 54 n F 2 CDR 1 F CDR 1 C CDR 63 n F 2 CDR 2 F CDR 2 C CDR 64 n F 2 ERI 3 F ERI 3 C ERI 65 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 CPH 1 106 62 CPH CPH A . H 5 NI 1 107 600 NI NI A . I 5 NI 1 108 601 NI NI A . J 4 CPH 1 103 56 CPH CPH B . K 5 NI 1 107 602 NI NI B . L 6 HOH 1 201 125 HOH HOH A . L 6 HOH 2 202 153 HOH HOH A . L 6 HOH 3 203 177 HOH HOH A . L 6 HOH 4 204 150 HOH HOH A . L 6 HOH 5 205 100 HOH HOH A . L 6 HOH 6 206 105 HOH HOH A . L 6 HOH 7 207 152 HOH HOH A . L 6 HOH 8 208 165 HOH HOH A . L 6 HOH 9 209 102 HOH HOH A . L 6 HOH 10 210 132 HOH HOH A . L 6 HOH 11 211 104 HOH HOH A . L 6 HOH 12 212 176 HOH HOH A . L 6 HOH 13 213 137 HOH HOH A . L 6 HOH 14 214 115 HOH HOH A . L 6 HOH 15 215 163 HOH HOH A . L 6 HOH 16 216 143 HOH HOH A . L 6 HOH 17 217 112 HOH HOH A . L 6 HOH 18 218 103 HOH HOH A . L 6 HOH 19 219 172 HOH HOH A . L 6 HOH 20 220 140 HOH HOH A . L 6 HOH 21 221 161 HOH HOH A . L 6 HOH 22 222 158 HOH HOH A . L 6 HOH 23 223 128 HOH HOH A . L 6 HOH 24 224 169 HOH HOH A . L 6 HOH 25 225 145 HOH HOH A . L 6 HOH 26 226 130 HOH HOH A . L 6 HOH 27 227 180 HOH HOH A . L 6 HOH 28 228 183 HOH HOH A . L 6 HOH 29 229 118 HOH HOH A . L 6 HOH 30 230 175 HOH HOH A . L 6 HOH 31 231 121 HOH HOH A . L 6 HOH 32 232 187 HOH HOH A . L 6 HOH 33 233 131 HOH HOH A . L 6 HOH 34 234 155 HOH HOH A . L 6 HOH 35 235 149 HOH HOH A . L 6 HOH 36 236 111 HOH HOH A . L 6 HOH 37 237 135 HOH HOH A . L 6 HOH 38 238 106 HOH HOH A . L 6 HOH 39 239 151 HOH HOH A . L 6 HOH 40 240 188 HOH HOH A . L 6 HOH 41 241 173 HOH HOH A . L 6 HOH 42 242 119 HOH HOH A . L 6 HOH 43 243 168 HOH HOH A . L 6 HOH 44 244 181 HOH HOH A . L 6 HOH 45 245 186 HOH HOH A . L 6 HOH 46 246 178 HOH HOH A . M 6 HOH 1 201 162 HOH HOH B . M 6 HOH 2 202 170 HOH HOH B . M 6 HOH 3 203 174 HOH HOH B . M 6 HOH 4 204 160 HOH HOH B . M 6 HOH 5 205 126 HOH HOH B . M 6 HOH 6 206 164 HOH HOH B . M 6 HOH 7 207 101 HOH HOH B . M 6 HOH 8 208 110 HOH HOH B . M 6 HOH 9 209 114 HOH HOH B . M 6 HOH 10 210 148 HOH HOH B . M 6 HOH 11 211 184 HOH HOH B . M 6 HOH 12 212 109 HOH HOH B . M 6 HOH 13 213 107 HOH HOH B . M 6 HOH 14 214 117 HOH HOH B . M 6 HOH 15 215 171 HOH HOH B . M 6 HOH 16 216 134 HOH HOH B . M 6 HOH 17 217 113 HOH HOH B . M 6 HOH 18 218 123 HOH HOH B . M 6 HOH 19 219 154 HOH HOH B . M 6 HOH 20 220 166 HOH HOH B . M 6 HOH 21 221 147 HOH HOH B . M 6 HOH 22 222 120 HOH HOH B . M 6 HOH 23 223 108 HOH HOH B . M 6 HOH 24 224 116 HOH HOH B . M 6 HOH 25 225 129 HOH HOH B . M 6 HOH 26 226 167 HOH HOH B . M 6 HOH 27 227 157 HOH HOH B . M 6 HOH 28 228 138 HOH HOH B . M 6 HOH 29 229 156 HOH HOH B . M 6 HOH 30 230 142 HOH HOH B . M 6 HOH 31 231 136 HOH HOH B . M 6 HOH 32 232 146 HOH HOH B . M 6 HOH 33 233 159 HOH HOH B . M 6 HOH 34 234 179 HOH HOH B . M 6 HOH 35 235 141 HOH HOH B . M 6 HOH 36 236 124 HOH HOH B . M 6 HOH 37 237 139 HOH HOH B . M 6 HOH 38 238 144 HOH HOH B . M 6 HOH 39 239 127 HOH HOH B . M 6 HOH 40 240 122 HOH HOH B . M 6 HOH 41 241 133 HOH HOH B . M 6 HOH 42 242 182 HOH HOH B . M 6 HOH 43 243 185 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? Blu-Ice ? ? ? . 1 ? 'data processing' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELX ? ? ? . 4 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.10.1-2155 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 5XEW _cell.details ? _cell.formula_units_Z ? _cell.length_a 48.291 _cell.length_a_esd ? _cell.length_b 48.291 _cell.length_b_esd ? _cell.length_c 83.356 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XEW _symmetry.cell_setting ? _symmetry.Int_Tables_number 153 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 1 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5XEW _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.87 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 68.23 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;1.0 mM single stranded-DNA, 2.0 mM Chromomycin A3, 4mM NiSO4 6H2O, 50 mM sodium-cacodylate buffer, 5 mM MgCl2, 1 mM spermine, 3 % MPD ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-01-01 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.45104 1.0 2 1.48491 1.0 3 1.48582 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSRRC BEAMLINE BL13B1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.45104,1.48491,1.48582 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL13B1 _diffrn_source.pdbx_synchrotron_site NSRRC # _reflns.B_iso_Wilson_estimate 30.690 _reflns.entry_id 5XEW _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.750 _reflns.d_resolution_low 30.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 21692 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.600 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.100 _reflns.pdbx_Rmerge_I_obs 0.050 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 28.200 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 2.733 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.750 1.810 ? ? ? ? ? ? ? 96.500 ? ? ? ? 0.364 ? ? ? ? ? ? ? ? 6.100 ? 1.038 ? ? ? ? ? 1 1 ? ? 1.810 1.890 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.235 ? ? ? ? ? ? ? ? 8.900 ? 1.078 ? ? ? ? ? 2 1 ? ? 1.890 1.970 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.163 ? ? ? ? ? ? ? ? 10.400 ? 1.199 ? ? ? ? ? 3 1 ? ? 1.970 2.070 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.119 ? ? ? ? ? ? ? ? 10.700 ? 1.310 ? ? ? ? ? 4 1 ? ? 2.070 2.200 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.097 ? ? ? ? ? ? ? ? 10.700 ? 1.640 ? ? ? ? ? 5 1 ? ? 2.200 2.370 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.078 ? ? ? ? ? ? ? ? 10.900 ? 1.993 ? ? ? ? ? 6 1 ? ? 2.370 2.610 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.076 ? ? ? ? ? ? ? ? 10.900 ? 2.820 ? ? ? ? ? 7 1 ? ? 2.610 2.990 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.082 ? ? ? ? ? ? ? ? 10.700 ? 2.846 ? ? ? ? ? 8 1 ? ? 2.990 3.770 ? ? ? ? ? ? ? 100.000 ? ? ? ? 0.044 ? ? ? ? ? ? ? ? 10.700 ? 4.074 ? ? ? ? ? 9 1 ? ? 3.770 30.000 ? ? ? ? ? ? ? 99.200 ? ? ? ? 0.041 ? ? ? ? ? ? ? ? 10.400 ? 7.942 ? ? ? ? ? 10 1 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 115.530 _refine.B_iso_mean 39.6775 _refine.B_iso_min 20.710 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5XEW _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.7510 _refine.ls_d_res_low 23.1920 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 21692 _refine.ls_number_reflns_R_free 2186 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.0000 _refine.ls_percent_reflns_R_free 10.0800 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2103 _refine.ls_R_factor_R_free 0.2379 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2071 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 26.9500 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1600 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.7510 _refine_hist.d_res_low 23.1920 _refine_hist.pdbx_number_atoms_ligand 247 _refine_hist.number_atoms_solvent 89 _refine_hist.number_atoms_total 704 _refine_hist.pdbx_number_residues_total 20 _refine_hist.pdbx_B_iso_mean_ligand 40.82 _refine_hist.pdbx_B_iso_mean_solvent 42.77 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 368 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 ? 714 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.088 ? 1056 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.055 ? 136 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.010 ? 30 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 27.056 ? 316 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.7508 1.7889 1211 . 127 1084 87.0000 . . . 0.2630 0.0000 0.2919 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 1.7889 1.8305 1312 . 129 1183 99.0000 . . . 0.2993 0.0000 0.2451 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 1.8305 1.8763 1398 . 144 1254 100.0000 . . . 0.2575 0.0000 0.2272 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 1.8763 1.9270 1384 . 144 1240 100.0000 . . . 0.2342 0.0000 0.2177 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 1.9270 1.9836 1336 . 126 1210 100.0000 . . . 0.2618 0.0000 0.1901 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 1.9836 2.0476 1386 . 148 1238 100.0000 . . . 0.2888 0.0000 0.2076 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 2.0476 2.1208 1372 . 138 1234 100.0000 . . . 0.2164 0.0000 0.2009 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 2.1208 2.2056 1364 . 134 1230 100.0000 . . . 0.3360 0.0000 0.2503 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 2.2056 2.3059 1370 . 132 1238 100.0000 . . . 0.2745 0.0000 0.2218 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 2.3059 2.4274 1344 . 136 1208 100.0000 . . . 0.2420 0.0000 0.2498 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 2.4274 2.5792 1369 . 136 1233 100.0000 . . . 0.2887 0.0000 0.2349 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 2.5792 2.7781 1370 . 126 1244 100.0000 . . . 0.3235 0.0000 0.2664 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 2.7781 3.0571 1381 . 138 1243 100.0000 . . . 0.2536 0.0000 0.2695 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 3.0571 3.4982 1357 . 146 1211 100.0000 . . . 0.2328 0.0000 0.1935 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 3.4982 4.4024 1395 . 145 1250 100.0000 . . . 0.2036 0.0000 0.1767 . . . . . . 16 . . . 'X-RAY DIFFRACTION' 4.4024 23.1941 1343 . 137 1206 99.0000 . . . 0.2003 0.0000 0.1712 . . . . . . 16 . . . # _struct.entry_id 5XEW _struct.title 'Crystal structure of the [Ni2+-(chromomycin A3)2]-CCG repeats complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5XEW _struct_keywords.text ;Trinucleotide repeats, neurological disease, induced fit recognition, metal binding ligand, consecutive bases flip-out, DNA deformation, molecular diagnostics, DNA-ANTIBIOTIC complex ; _struct_keywords.pdbx_keywords DNA/ANTIBIOTIC # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 2 ? G N N 4 ? H N N 5 ? I N N 5 ? J N N 4 ? K N N 5 ? L N N 6 ? M N N 6 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5XEW _struct_ref.pdbx_db_accession 5XEW _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5XEW A 1 ? 13 ? 5XEW 1 ? 13 ? 1 13 2 1 5XEW B 1 ? 13 ? 5XEW 14 ? 26 ? 14 26 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6480 ? 1 MORE 42 ? 1 'SSA (A^2)' 3900 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? G CPH . C6 ? ? ? 1_555 D ARI . O1 ? ? A CPH 106 D ARI 1 1_555 ? ? ? ? ? ? ? 1.375 ? ? covale2 covale one ? G CPH . C2 ? ? ? 1_555 F CDR . O1 ? ? A CPH 106 F CDR 1 1_555 ? ? ? ? ? ? ? 1.379 ? ? covale3 covale one ? J CPH . C2 ? ? ? 1_555 C CDR . O1 ? ? B CPH 103 C CDR 1 1_555 ? ? ? ? ? ? ? 1.380 ? ? covale4 covale one ? J CPH . C6 ? ? ? 1_555 E ARI . O1 ? ? B CPH 103 E ARI 1 1_555 ? ? ? ? ? ? ? 1.376 ? ? covale5 covale one ? C CDR . C3 ? ? ? 1_555 C CDR . O1 ? ? C CDR 1 C CDR 2 1_555 ? ? ? ? ? ? ? 1.378 ? ? covale6 covale one ? C CDR . C3 ? ? ? 1_555 C ERI . O1 ? ? C CDR 2 C ERI 3 1_555 ? ? ? ? ? ? ? 1.377 ? ? covale7 covale one ? D ARI . C3 ? ? ? 1_555 D 1GL . O1 ? ? D ARI 1 D 1GL 2 1_555 ? ? ? ? ? ? ? 1.378 ? ? covale8 covale one ? E ARI . C3 ? ? ? 1_555 E 1GL . O1 ? ? E ARI 1 E 1GL 2 1_555 ? ? ? ? ? ? ? 1.378 ? ? covale9 covale one ? F CDR . C3 ? ? ? 1_555 F CDR . O1 ? ? F CDR 1 F CDR 2 1_555 ? ? ? ? ? ? ? 1.378 ? ? covale10 covale one ? F CDR . C3 ? ? ? 1_555 F ERI . O1 ? ? F CDR 2 F ERI 3 1_555 ? ? ? ? ? ? ? 1.378 ? ? metalc1 metalc ? ? A DG 8 N7 ? ? ? 1_555 I NI . NI ? ? A DG 8 A NI 108 1_555 ? ? ? ? ? ? ? 2.121 ? ? metalc2 metalc ? ? G CPH . O1 ? ? ? 1_555 H NI . NI ? ? A CPH 106 A NI 107 1_555 ? ? ? ? ? ? ? 1.963 ? ? metalc3 metalc ? ? G CPH . O9 ? ? ? 1_555 H NI . NI ? ? A CPH 106 A NI 107 1_555 ? ? ? ? ? ? ? 1.939 ? ? metalc4 metalc ? ? H NI . NI ? ? ? 1_555 L HOH . O ? ? A NI 107 A HOH 205 1_555 ? ? ? ? ? ? ? 2.120 ? ? metalc5 metalc ? ? H NI . NI ? ? ? 1_555 J CPH . O1 ? ? A NI 107 B CPH 103 1_555 ? ? ? ? ? ? ? 1.981 ? ? metalc6 metalc ? ? H NI . NI ? ? ? 1_555 J CPH . O9 ? ? A NI 107 B CPH 103 1_555 ? ? ? ? ? ? ? 1.931 ? ? metalc7 metalc ? ? H NI . NI ? ? ? 1_555 M HOH . O ? ? A NI 107 B HOH 207 1_555 ? ? ? ? ? ? ? 2.127 ? ? metalc8 metalc ? ? I NI . NI ? ? ? 1_555 L HOH . O ? ? A NI 108 A HOH 206 1_555 ? ? ? ? ? ? ? 2.003 ? ? metalc9 metalc ? ? I NI . NI ? ? ? 1_555 L HOH . O ? ? A NI 108 A HOH 209 1_555 ? ? ? ? ? ? ? 1.820 ? ? metalc10 metalc ? ? I NI . NI ? ? ? 1_555 L HOH . O ? ? A NI 108 A HOH 211 1_555 ? ? ? ? ? ? ? 1.970 ? ? metalc11 metalc ? ? I NI . NI ? ? ? 1_555 L HOH . O ? ? A NI 108 A HOH 218 1_555 ? ? ? ? ? ? ? 1.896 ? ? metalc12 metalc ? ? I NI . NI ? ? ? 1_555 L HOH . O ? ? A NI 108 A HOH 238 1_555 ? ? ? ? ? ? ? 2.305 ? ? metalc13 metalc ? ? L HOH . O ? ? ? 1_555 K NI . NI ? ? A HOH 236 B NI 107 1_555 ? ? ? ? ? ? ? 2.255 ? ? metalc14 metalc ? ? B DG 8 N7 ? ? ? 1_555 K NI . NI ? ? B DG 21 B NI 107 1_555 ? ? ? ? ? ? ? 2.118 ? ? metalc15 metalc ? ? K NI . NI ? ? ? 1_555 M HOH . O ? ? B NI 107 B HOH 208 1_555 ? ? ? ? ? ? ? 2.048 ? ? metalc16 metalc ? ? K NI . NI ? ? ? 1_555 M HOH . O ? ? B NI 107 B HOH 212 1_555 ? ? ? ? ? ? ? 1.954 ? ? metalc17 metalc ? ? K NI . NI ? ? ? 1_555 M HOH . O ? ? B NI 107 B HOH 213 1_555 ? ? ? ? ? ? ? 1.831 ? ? metalc18 metalc ? ? K NI . NI ? ? ? 1_555 M HOH . O ? ? B NI 107 B HOH 223 1_555 ? ? ? ? ? ? ? 1.907 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 13 N7 ? ? A DT 1 B DA 26 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 13 N6 ? ? A DT 1 B DA 26 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog3 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 12 N1 ? ? A DT 2 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 12 N6 ? ? A DT 2 B DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 4 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 4 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 4 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 5 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 5 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 5 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 8 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 8 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 8 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 8 N1 ? ? A DC 9 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 8 O6 ? ? A DC 9 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 8 N2 ? ? A DC 9 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 10 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 10 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 10 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 11 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 11 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 11 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 12 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 12 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 13 N6 ? ? ? 1_555 B DT 1 O4 ? ? A DA 13 B DT 14 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog26 hydrog ? ? A DA 13 N7 ? ? ? 1_555 B DT 1 N3 ? ? A DA 13 B DT 14 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 8 ? A DG 8 ? 1_555 NI ? I NI . ? A NI 108 ? 1_555 O ? L HOH . ? A HOH 206 ? 1_555 93.2 ? 2 N7 ? A DG 8 ? A DG 8 ? 1_555 NI ? I NI . ? A NI 108 ? 1_555 O ? L HOH . ? A HOH 209 ? 1_555 84.1 ? 3 O ? L HOH . ? A HOH 206 ? 1_555 NI ? I NI . ? A NI 108 ? 1_555 O ? L HOH . ? A HOH 209 ? 1_555 93.1 ? 4 N7 ? A DG 8 ? A DG 8 ? 1_555 NI ? I NI . ? A NI 108 ? 1_555 O ? L HOH . ? A HOH 211 ? 1_555 92.9 ? 5 O ? L HOH . ? A HOH 206 ? 1_555 NI ? I NI . ? A NI 108 ? 1_555 O ? L HOH . ? A HOH 211 ? 1_555 160.4 ? 6 O ? L HOH . ? A HOH 209 ? 1_555 NI ? I NI . ? A NI 108 ? 1_555 O ? L HOH . ? A HOH 211 ? 1_555 69.1 ? 7 N7 ? A DG 8 ? A DG 8 ? 1_555 NI ? I NI . ? A NI 108 ? 1_555 O ? L HOH . ? A HOH 218 ? 1_555 93.3 ? 8 O ? L HOH . ? A HOH 206 ? 1_555 NI ? I NI . ? A NI 108 ? 1_555 O ? L HOH . ? A HOH 218 ? 1_555 81.9 ? 9 O ? L HOH . ? A HOH 209 ? 1_555 NI ? I NI . ? A NI 108 ? 1_555 O ? L HOH . ? A HOH 218 ? 1_555 174.3 ? 10 O ? L HOH . ? A HOH 211 ? 1_555 NI ? I NI . ? A NI 108 ? 1_555 O ? L HOH . ? A HOH 218 ? 1_555 116.3 ? 11 N7 ? A DG 8 ? A DG 8 ? 1_555 NI ? I NI . ? A NI 108 ? 1_555 O ? L HOH . ? A HOH 238 ? 1_555 169.1 ? 12 O ? L HOH . ? A HOH 206 ? 1_555 NI ? I NI . ? A NI 108 ? 1_555 O ? L HOH . ? A HOH 238 ? 1_555 95.4 ? 13 O ? L HOH . ? A HOH 209 ? 1_555 NI ? I NI . ? A NI 108 ? 1_555 O ? L HOH . ? A HOH 238 ? 1_555 88.7 ? 14 O ? L HOH . ? A HOH 211 ? 1_555 NI ? I NI . ? A NI 108 ? 1_555 O ? L HOH . ? A HOH 238 ? 1_555 76.8 ? 15 O ? L HOH . ? A HOH 218 ? 1_555 NI ? I NI . ? A NI 108 ? 1_555 O ? L HOH . ? A HOH 238 ? 1_555 94.6 ? 16 O1 ? G CPH . ? A CPH 106 ? 1_555 NI ? H NI . ? A NI 107 ? 1_555 O9 ? G CPH . ? A CPH 106 ? 1_555 82.8 ? 17 O1 ? G CPH . ? A CPH 106 ? 1_555 NI ? H NI . ? A NI 107 ? 1_555 O ? L HOH . ? A HOH 205 ? 1_555 92.1 ? 18 O9 ? G CPH . ? A CPH 106 ? 1_555 NI ? H NI . ? A NI 107 ? 1_555 O ? L HOH . ? A HOH 205 ? 1_555 91.4 ? 19 O1 ? G CPH . ? A CPH 106 ? 1_555 NI ? H NI . ? A NI 107 ? 1_555 O1 ? J CPH . ? B CPH 103 ? 1_555 83.9 ? 20 O9 ? G CPH . ? A CPH 106 ? 1_555 NI ? H NI . ? A NI 107 ? 1_555 O1 ? J CPH . ? B CPH 103 ? 1_555 97.1 ? 21 O ? L HOH . ? A HOH 205 ? 1_555 NI ? H NI . ? A NI 107 ? 1_555 O1 ? J CPH . ? B CPH 103 ? 1_555 170.2 ? 22 O1 ? G CPH . ? A CPH 106 ? 1_555 NI ? H NI . ? A NI 107 ? 1_555 O9 ? J CPH . ? B CPH 103 ? 1_555 97.3 ? 23 O9 ? G CPH . ? A CPH 106 ? 1_555 NI ? H NI . ? A NI 107 ? 1_555 O9 ? J CPH . ? B CPH 103 ? 1_555 179.0 ? 24 O ? L HOH . ? A HOH 205 ? 1_555 NI ? H NI . ? A NI 107 ? 1_555 O9 ? J CPH . ? B CPH 103 ? 1_555 87.6 ? 25 O1 ? J CPH . ? B CPH 103 ? 1_555 NI ? H NI . ? A NI 107 ? 1_555 O9 ? J CPH . ? B CPH 103 ? 1_555 83.9 ? 26 O1 ? G CPH . ? A CPH 106 ? 1_555 NI ? H NI . ? A NI 107 ? 1_555 O ? M HOH . ? B HOH 207 ? 1_555 168.2 ? 27 O9 ? G CPH . ? A CPH 106 ? 1_555 NI ? H NI . ? A NI 107 ? 1_555 O ? M HOH . ? B HOH 207 ? 1_555 86.2 ? 28 O ? L HOH . ? A HOH 205 ? 1_555 NI ? H NI . ? A NI 107 ? 1_555 O ? M HOH . ? B HOH 207 ? 1_555 92.5 ? 29 O1 ? J CPH . ? B CPH 103 ? 1_555 NI ? H NI . ? A NI 107 ? 1_555 O ? M HOH . ? B HOH 207 ? 1_555 93.1 ? 30 O9 ? J CPH . ? B CPH 103 ? 1_555 NI ? H NI . ? A NI 107 ? 1_555 O ? M HOH . ? B HOH 207 ? 1_555 93.7 ? 31 O ? L HOH . ? A HOH 236 ? 1_555 NI ? K NI . ? B NI 107 ? 1_555 N7 ? B DG 8 ? B DG 21 ? 1_555 167.5 ? 32 O ? L HOH . ? A HOH 236 ? 1_555 NI ? K NI . ? B NI 107 ? 1_555 O ? M HOH . ? B HOH 208 ? 1_555 94.9 ? 33 N7 ? B DG 8 ? B DG 21 ? 1_555 NI ? K NI . ? B NI 107 ? 1_555 O ? M HOH . ? B HOH 208 ? 1_555 90.9 ? 34 O ? L HOH . ? A HOH 236 ? 1_555 NI ? K NI . ? B NI 107 ? 1_555 O ? M HOH . ? B HOH 212 ? 1_555 85.0 ? 35 N7 ? B DG 8 ? B DG 21 ? 1_555 NI ? K NI . ? B NI 107 ? 1_555 O ? M HOH . ? B HOH 212 ? 1_555 92.4 ? 36 O ? M HOH . ? B HOH 208 ? 1_555 NI ? K NI . ? B NI 107 ? 1_555 O ? M HOH . ? B HOH 212 ? 1_555 164.0 ? 37 O ? L HOH . ? A HOH 236 ? 1_555 NI ? K NI . ? B NI 107 ? 1_555 O ? M HOH . ? B HOH 213 ? 1_555 105.0 ? 38 N7 ? B DG 8 ? B DG 21 ? 1_555 NI ? K NI . ? B NI 107 ? 1_555 O ? M HOH . ? B HOH 213 ? 1_555 85.3 ? 39 O ? M HOH . ? B HOH 208 ? 1_555 NI ? K NI . ? B NI 107 ? 1_555 O ? M HOH . ? B HOH 213 ? 1_555 95.8 ? 40 O ? M HOH . ? B HOH 212 ? 1_555 NI ? K NI . ? B NI 107 ? 1_555 O ? M HOH . ? B HOH 213 ? 1_555 68.9 ? 41 O ? L HOH . ? A HOH 236 ? 1_555 NI ? K NI . ? B NI 107 ? 1_555 O ? M HOH . ? B HOH 223 ? 1_555 77.0 ? 42 N7 ? B DG 8 ? B DG 21 ? 1_555 NI ? K NI . ? B NI 107 ? 1_555 O ? M HOH . ? B HOH 223 ? 1_555 93.3 ? 43 O ? M HOH . ? B HOH 208 ? 1_555 NI ? K NI . ? B NI 107 ? 1_555 O ? M HOH . ? B HOH 223 ? 1_555 79.3 ? 44 O ? M HOH . ? B HOH 212 ? 1_555 NI ? K NI . ? B NI 107 ? 1_555 O ? M HOH . ? B HOH 223 ? 1_555 116.1 ? 45 O ? M HOH . ? B HOH 213 ? 1_555 NI ? K NI . ? B NI 107 ? 1_555 O ? M HOH . ? B HOH 223 ? 1_555 174.9 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O4 A DT 1 ? ? O A HOH 201 ? ? 2.13 2 1 O B HOH 212 ? ? O B HOH 213 ? ? 2.14 3 1 O A HOH 230 ? ? O A HOH 232 ? ? 2.15 4 1 O A HOH 209 ? ? O A HOH 211 ? ? 2.15 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 DC _pdbx_validate_rmsd_bond.auth_seq_id_1 23 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 DC _pdbx_validate_rmsd_bond.auth_seq_id_2 23 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.383 _pdbx_validate_rmsd_bond.bond_target_value 1.419 _pdbx_validate_rmsd_bond.bond_deviation -0.036 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DA 13 ? ? "C1'" A DA 13 ? ? N9 A DA 13 ? ? 110.30 108.30 2.00 0.30 N 2 1 "O4'" B DA 26 ? ? "C1'" B DA 26 ? ? N9 B DA 26 ? ? 110.39 108.30 2.09 0.30 N # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 211 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id M _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_entry_details.entry_id 5XEW _pdbx_entry_details.nonpolymer_details ;The force field of Chro unit used in the refinement of NiII(Chro)2-DNA complex structure was generated using the atomic resolution crystal structure of NiII(Chro)2. ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 242 ? . 6.11 2 1 O ? A HOH 245 ? . 7.00 3 1 O ? B HOH 243 ? 5.91 . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A DC 3 ? A DC 3 2 1 Y 1 B DC 16 ? B DC 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1GL O1 O N N 1 1GL C1 C N S 2 1GL C2 C N N 3 1GL C3 C N R 4 1GL O3 O N N 5 1GL C4 C N R 6 1GL O4 O N N 7 1GL CME C N N 8 1GL C5 C N R 9 1GL O5 O N N 10 1GL C6 C N N 11 1GL HO1 H N N 12 1GL H1 H N N 13 1GL H2 H N N 14 1GL H22 H N N 15 1GL H3 H N N 16 1GL HO3 H N N 17 1GL H4 H N N 18 1GL HM41 H N N 19 1GL HM42 H N N 20 1GL HM43 H N N 21 1GL H5 H N N 22 1GL H61 H N N 23 1GL H62 H N N 24 1GL H63 H N N 25 ARI O1 O N N 26 ARI C1 C N R 27 ARI C2 C N N 28 ARI C3 C N N 29 ARI C4 C N R 30 ARI O4 O N N 31 ARI CME C N N 32 ARI CO4 C N N 33 ARI OC4 O N N 34 ARI C5 C N R 35 ARI O5 O N N 36 ARI C6 C N N 37 ARI HO1 H N N 38 ARI H1 H N N 39 ARI H2 H N N 40 ARI H22 H N N 41 ARI H3 H N N 42 ARI H32 H N N 43 ARI H4 H N N 44 ARI H41 H N N 45 ARI H42 H N N 46 ARI H43 H N N 47 ARI H5 H N N 48 ARI H61 H N N 49 ARI H62 H N N 50 ARI H63 H N N 51 CDR O1 O N N 52 CDR C1 C N R 53 CDR C2 C N N 54 CDR C3 C N N 55 CDR C4 C N S 56 CDR O4 O N N 57 CDR C5 C N R 58 CDR O5 O N N 59 CDR C6 C N N 60 CDR HO1 H N N 61 CDR H1 H N N 62 CDR H2 H N N 63 CDR H22 H N N 64 CDR H3 H N N 65 CDR H32 H N N 66 CDR H4 H N N 67 CDR HO4 H N N 68 CDR H5 H N N 69 CDR H61 H N N 70 CDR H62 H N N 71 CDR H63 H N N 72 CPH C1 C N N 73 CPH O1 O N N 74 CPH C2 C N S 75 CPH C3 C N R 76 CPH C4 C N N 77 CPH C5 C Y N 78 CPH C6 C Y N 79 CPH C7 C Y N 80 CPH C8 C Y N 81 CPH O8 O N N 82 CPH C9 C Y N 83 CPH O9 O N N 84 CPH "C1'" C N S 85 CPH "O1'" O N N 86 CPH C10 C Y N 87 CPH "C2'" C N N 88 CPH "O2'" O N N 89 CPH "C3'" C N S 90 CPH "O3'" O N N 91 CPH "C4'" C N R 92 CPH "O4'" O N N 93 CPH C4A C Y N 94 CPH "C5'" C N N 95 CPH C5A C Y N 96 CPH C8A C Y N 97 CPH C9A C Y N 98 CPH CC7 C N N 99 CPH O6 O N N 100 CPH O2 O N N 101 CPH CME C N N 102 CPH H2 H N N 103 CPH H3 H N N 104 CPH H4 H N N 105 CPH H4A H N N 106 CPH H5 H N N 107 CPH HO8 H N N 108 CPH HO9 H N N 109 CPH "H1'" H N N 110 CPH H10 H N N 111 CPH "H3'" H N N 112 CPH "HO3'" H N N 113 CPH "H4'" H N N 114 CPH "HO4'" H N N 115 CPH "H5'" H N N 116 CPH "H5'A" H N N 117 CPH "H5'B" H N N 118 CPH HC7 H N N 119 CPH HC7A H N N 120 CPH HC7B H N N 121 CPH HO6 H N N 122 CPH HO2 H N N 123 CPH HME H N N 124 CPH HMEA H N N 125 CPH HMEB H N N 126 DA OP3 O N N 127 DA P P N N 128 DA OP1 O N N 129 DA OP2 O N N 130 DA "O5'" O N N 131 DA "C5'" C N N 132 DA "C4'" C N R 133 DA "O4'" O N N 134 DA "C3'" C N S 135 DA "O3'" O N N 136 DA "C2'" C N N 137 DA "C1'" C N R 138 DA N9 N Y N 139 DA C8 C Y N 140 DA N7 N Y N 141 DA C5 C Y N 142 DA C6 C Y N 143 DA N6 N N N 144 DA N1 N Y N 145 DA C2 C Y N 146 DA N3 N Y N 147 DA C4 C Y N 148 DA HOP3 H N N 149 DA HOP2 H N N 150 DA "H5'" H N N 151 DA "H5''" H N N 152 DA "H4'" H N N 153 DA "H3'" H N N 154 DA "HO3'" H N N 155 DA "H2'" H N N 156 DA "H2''" H N N 157 DA "H1'" H N N 158 DA H8 H N N 159 DA H61 H N N 160 DA H62 H N N 161 DA H2 H N N 162 DC OP3 O N N 163 DC P P N N 164 DC OP1 O N N 165 DC OP2 O N N 166 DC "O5'" O N N 167 DC "C5'" C N N 168 DC "C4'" C N R 169 DC "O4'" O N N 170 DC "C3'" C N S 171 DC "O3'" O N N 172 DC "C2'" C N N 173 DC "C1'" C N R 174 DC N1 N N N 175 DC C2 C N N 176 DC O2 O N N 177 DC N3 N N N 178 DC C4 C N N 179 DC N4 N N N 180 DC C5 C N N 181 DC C6 C N N 182 DC HOP3 H N N 183 DC HOP2 H N N 184 DC "H5'" H N N 185 DC "H5''" H N N 186 DC "H4'" H N N 187 DC "H3'" H N N 188 DC "HO3'" H N N 189 DC "H2'" H N N 190 DC "H2''" H N N 191 DC "H1'" H N N 192 DC H41 H N N 193 DC H42 H N N 194 DC H5 H N N 195 DC H6 H N N 196 DG OP3 O N N 197 DG P P N N 198 DG OP1 O N N 199 DG OP2 O N N 200 DG "O5'" O N N 201 DG "C5'" C N N 202 DG "C4'" C N R 203 DG "O4'" O N N 204 DG "C3'" C N S 205 DG "O3'" O N N 206 DG "C2'" C N N 207 DG "C1'" C N R 208 DG N9 N Y N 209 DG C8 C Y N 210 DG N7 N Y N 211 DG C5 C Y N 212 DG C6 C N N 213 DG O6 O N N 214 DG N1 N N N 215 DG C2 C N N 216 DG N2 N N N 217 DG N3 N N N 218 DG C4 C Y N 219 DG HOP3 H N N 220 DG HOP2 H N N 221 DG "H5'" H N N 222 DG "H5''" H N N 223 DG "H4'" H N N 224 DG "H3'" H N N 225 DG "HO3'" H N N 226 DG "H2'" H N N 227 DG "H2''" H N N 228 DG "H1'" H N N 229 DG H8 H N N 230 DG H1 H N N 231 DG H21 H N N 232 DG H22 H N N 233 DT OP3 O N N 234 DT P P N N 235 DT OP1 O N N 236 DT OP2 O N N 237 DT "O5'" O N N 238 DT "C5'" C N N 239 DT "C4'" C N R 240 DT "O4'" O N N 241 DT "C3'" C N S 242 DT "O3'" O N N 243 DT "C2'" C N N 244 DT "C1'" C N R 245 DT N1 N N N 246 DT C2 C N N 247 DT O2 O N N 248 DT N3 N N N 249 DT C4 C N N 250 DT O4 O N N 251 DT C5 C N N 252 DT C7 C N N 253 DT C6 C N N 254 DT HOP3 H N N 255 DT HOP2 H N N 256 DT "H5'" H N N 257 DT "H5''" H N N 258 DT "H4'" H N N 259 DT "H3'" H N N 260 DT "HO3'" H N N 261 DT "H2'" H N N 262 DT "H2''" H N N 263 DT "H1'" H N N 264 DT H3 H N N 265 DT H71 H N N 266 DT H72 H N N 267 DT H73 H N N 268 DT H6 H N N 269 ERI O1 O N N 270 ERI C1 C N R 271 ERI C2 C N N 272 ERI C3 C N S 273 ERI O3 O N N 274 ERI CC3 C N N 275 ERI C4 C N S 276 ERI O4 O N N 277 ERI CME C N N 278 ERI CO4 C N N 279 ERI OC4 O N N 280 ERI C5 C N S 281 ERI O5 O N N 282 ERI C6 C N N 283 ERI HO1 H N N 284 ERI H1 H N N 285 ERI H21 H N N 286 ERI H22 H N N 287 ERI HO3 H N N 288 ERI H31 H N N 289 ERI H32 H N N 290 ERI H33 H N N 291 ERI H4 H N N 292 ERI H41 H N N 293 ERI H42 H N N 294 ERI H43 H N N 295 ERI H5 H N N 296 ERI H61 H N N 297 ERI H62 H N N 298 ERI H63 H N N 299 HOH O O N N 300 HOH H1 H N N 301 HOH H2 H N N 302 NI NI NI N N 303 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1GL O1 C1 sing N N 1 1GL O1 HO1 sing N N 2 1GL C1 C2 sing N N 3 1GL C1 O5 sing N N 4 1GL C1 H1 sing N N 5 1GL C2 C3 sing N N 6 1GL C2 H2 sing N N 7 1GL C2 H22 sing N N 8 1GL C3 O3 sing N N 9 1GL C3 C4 sing N N 10 1GL C3 H3 sing N N 11 1GL O3 HO3 sing N N 12 1GL C4 O4 sing N N 13 1GL C4 C5 sing N N 14 1GL C4 H4 sing N N 15 1GL O4 CME sing N N 16 1GL CME HM41 sing N N 17 1GL CME HM42 sing N N 18 1GL CME HM43 sing N N 19 1GL C5 O5 sing N N 20 1GL C5 C6 sing N N 21 1GL C5 H5 sing N N 22 1GL C6 H61 sing N N 23 1GL C6 H62 sing N N 24 1GL C6 H63 sing N N 25 ARI O1 C1 sing N N 26 ARI O1 HO1 sing N N 27 ARI C1 C2 sing N N 28 ARI C1 O5 sing N N 29 ARI C1 H1 sing N N 30 ARI C2 C3 sing N N 31 ARI C2 H2 sing N N 32 ARI C2 H22 sing N N 33 ARI C3 C4 sing N N 34 ARI C3 H3 sing N N 35 ARI C3 H32 sing N N 36 ARI C4 O4 sing N N 37 ARI C4 C5 sing N N 38 ARI C4 H4 sing N N 39 ARI O4 CO4 sing N N 40 ARI CME CO4 sing N N 41 ARI CME H41 sing N N 42 ARI CME H42 sing N N 43 ARI CME H43 sing N N 44 ARI CO4 OC4 doub N N 45 ARI C5 O5 sing N N 46 ARI C5 C6 sing N N 47 ARI C5 H5 sing N N 48 ARI C6 H61 sing N N 49 ARI C6 H62 sing N N 50 ARI C6 H63 sing N N 51 CDR O1 C1 sing N N 52 CDR O1 HO1 sing N N 53 CDR C1 C2 sing N N 54 CDR C1 O5 sing N N 55 CDR C1 H1 sing N N 56 CDR C2 C3 sing N N 57 CDR C2 H2 sing N N 58 CDR C2 H22 sing N N 59 CDR C3 C4 sing N N 60 CDR C3 H3 sing N N 61 CDR C3 H32 sing N N 62 CDR C4 O4 sing N N 63 CDR C4 C5 sing N N 64 CDR C4 H4 sing N N 65 CDR O4 HO4 sing N N 66 CDR C5 O5 sing N N 67 CDR C5 C6 sing N N 68 CDR C5 H5 sing N N 69 CDR C6 H61 sing N N 70 CDR C6 H62 sing N N 71 CDR C6 H63 sing N N 72 CPH O1 C1 doub N N 73 CPH C9A C1 sing N N 74 CPH C1 C2 sing N N 75 CPH C2 O2 sing N N 76 CPH C2 C3 sing N N 77 CPH C2 H2 sing N N 78 CPH C3 C4 sing N N 79 CPH C3 "C1'" sing N N 80 CPH C3 H3 sing N N 81 CPH C4A C4 sing N N 82 CPH C4 H4 sing N N 83 CPH C4 H4A sing N N 84 CPH C6 C5 doub Y N 85 CPH C5 C5A sing Y N 86 CPH C5 H5 sing N N 87 CPH C7 C6 sing Y N 88 CPH O6 C6 sing N N 89 CPH CC7 C7 sing N N 90 CPH C7 C8 doub Y N 91 CPH O8 C8 sing N N 92 CPH C8 C8A sing Y N 93 CPH O8 HO8 sing N N 94 CPH O9 C9 sing N N 95 CPH C8A C9 doub Y N 96 CPH C9 C9A sing Y N 97 CPH O9 HO9 sing N N 98 CPH "C2'" "C1'" sing N N 99 CPH "C1'" "O1'" sing N N 100 CPH "C1'" "H1'" sing N N 101 CPH "O1'" CME sing N N 102 CPH C5A C10 doub Y N 103 CPH C10 C4A sing Y N 104 CPH C10 H10 sing N N 105 CPH "O2'" "C2'" doub N N 106 CPH "C2'" "C3'" sing N N 107 CPH "O3'" "C3'" sing N N 108 CPH "C3'" "C4'" sing N N 109 CPH "C3'" "H3'" sing N N 110 CPH "O3'" "HO3'" sing N N 111 CPH "O4'" "C4'" sing N N 112 CPH "C4'" "C5'" sing N N 113 CPH "C4'" "H4'" sing N N 114 CPH "O4'" "HO4'" sing N N 115 CPH C9A C4A doub Y N 116 CPH "C5'" "H5'" sing N N 117 CPH "C5'" "H5'A" sing N N 118 CPH "C5'" "H5'B" sing N N 119 CPH C8A C5A sing Y N 120 CPH CC7 HC7 sing N N 121 CPH CC7 HC7A sing N N 122 CPH CC7 HC7B sing N N 123 CPH O6 HO6 sing N N 124 CPH O2 HO2 sing N N 125 CPH CME HME sing N N 126 CPH CME HMEA sing N N 127 CPH CME HMEB sing N N 128 DA OP3 P sing N N 129 DA OP3 HOP3 sing N N 130 DA P OP1 doub N N 131 DA P OP2 sing N N 132 DA P "O5'" sing N N 133 DA OP2 HOP2 sing N N 134 DA "O5'" "C5'" sing N N 135 DA "C5'" "C4'" sing N N 136 DA "C5'" "H5'" sing N N 137 DA "C5'" "H5''" sing N N 138 DA "C4'" "O4'" sing N N 139 DA "C4'" "C3'" sing N N 140 DA "C4'" "H4'" sing N N 141 DA "O4'" "C1'" sing N N 142 DA "C3'" "O3'" sing N N 143 DA "C3'" "C2'" sing N N 144 DA "C3'" "H3'" sing N N 145 DA "O3'" "HO3'" sing N N 146 DA "C2'" "C1'" sing N N 147 DA "C2'" "H2'" sing N N 148 DA "C2'" "H2''" sing N N 149 DA "C1'" N9 sing N N 150 DA "C1'" "H1'" sing N N 151 DA N9 C8 sing Y N 152 DA N9 C4 sing Y N 153 DA C8 N7 doub Y N 154 DA C8 H8 sing N N 155 DA N7 C5 sing Y N 156 DA C5 C6 sing Y N 157 DA C5 C4 doub Y N 158 DA C6 N6 sing N N 159 DA C6 N1 doub Y N 160 DA N6 H61 sing N N 161 DA N6 H62 sing N N 162 DA N1 C2 sing Y N 163 DA C2 N3 doub Y N 164 DA C2 H2 sing N N 165 DA N3 C4 sing Y N 166 DC OP3 P sing N N 167 DC OP3 HOP3 sing N N 168 DC P OP1 doub N N 169 DC P OP2 sing N N 170 DC P "O5'" sing N N 171 DC OP2 HOP2 sing N N 172 DC "O5'" "C5'" sing N N 173 DC "C5'" "C4'" sing N N 174 DC "C5'" "H5'" sing N N 175 DC "C5'" "H5''" sing N N 176 DC "C4'" "O4'" sing N N 177 DC "C4'" "C3'" sing N N 178 DC "C4'" "H4'" sing N N 179 DC "O4'" "C1'" sing N N 180 DC "C3'" "O3'" sing N N 181 DC "C3'" "C2'" sing N N 182 DC "C3'" "H3'" sing N N 183 DC "O3'" "HO3'" sing N N 184 DC "C2'" "C1'" sing N N 185 DC "C2'" "H2'" sing N N 186 DC "C2'" "H2''" sing N N 187 DC "C1'" N1 sing N N 188 DC "C1'" "H1'" sing N N 189 DC N1 C2 sing N N 190 DC N1 C6 sing N N 191 DC C2 O2 doub N N 192 DC C2 N3 sing N N 193 DC N3 C4 doub N N 194 DC C4 N4 sing N N 195 DC C4 C5 sing N N 196 DC N4 H41 sing N N 197 DC N4 H42 sing N N 198 DC C5 C6 doub N N 199 DC C5 H5 sing N N 200 DC C6 H6 sing N N 201 DG OP3 P sing N N 202 DG OP3 HOP3 sing N N 203 DG P OP1 doub N N 204 DG P OP2 sing N N 205 DG P "O5'" sing N N 206 DG OP2 HOP2 sing N N 207 DG "O5'" "C5'" sing N N 208 DG "C5'" "C4'" sing N N 209 DG "C5'" "H5'" sing N N 210 DG "C5'" "H5''" sing N N 211 DG "C4'" "O4'" sing N N 212 DG "C4'" "C3'" sing N N 213 DG "C4'" "H4'" sing N N 214 DG "O4'" "C1'" sing N N 215 DG "C3'" "O3'" sing N N 216 DG "C3'" "C2'" sing N N 217 DG "C3'" "H3'" sing N N 218 DG "O3'" "HO3'" sing N N 219 DG "C2'" "C1'" sing N N 220 DG "C2'" "H2'" sing N N 221 DG "C2'" "H2''" sing N N 222 DG "C1'" N9 sing N N 223 DG "C1'" "H1'" sing N N 224 DG N9 C8 sing Y N 225 DG N9 C4 sing Y N 226 DG C8 N7 doub Y N 227 DG C8 H8 sing N N 228 DG N7 C5 sing Y N 229 DG C5 C6 sing N N 230 DG C5 C4 doub Y N 231 DG C6 O6 doub N N 232 DG C6 N1 sing N N 233 DG N1 C2 sing N N 234 DG N1 H1 sing N N 235 DG C2 N2 sing N N 236 DG C2 N3 doub N N 237 DG N2 H21 sing N N 238 DG N2 H22 sing N N 239 DG N3 C4 sing N N 240 DT OP3 P sing N N 241 DT OP3 HOP3 sing N N 242 DT P OP1 doub N N 243 DT P OP2 sing N N 244 DT P "O5'" sing N N 245 DT OP2 HOP2 sing N N 246 DT "O5'" "C5'" sing N N 247 DT "C5'" "C4'" sing N N 248 DT "C5'" "H5'" sing N N 249 DT "C5'" "H5''" sing N N 250 DT "C4'" "O4'" sing N N 251 DT "C4'" "C3'" sing N N 252 DT "C4'" "H4'" sing N N 253 DT "O4'" "C1'" sing N N 254 DT "C3'" "O3'" sing N N 255 DT "C3'" "C2'" sing N N 256 DT "C3'" "H3'" sing N N 257 DT "O3'" "HO3'" sing N N 258 DT "C2'" "C1'" sing N N 259 DT "C2'" "H2'" sing N N 260 DT "C2'" "H2''" sing N N 261 DT "C1'" N1 sing N N 262 DT "C1'" "H1'" sing N N 263 DT N1 C2 sing N N 264 DT N1 C6 sing N N 265 DT C2 O2 doub N N 266 DT C2 N3 sing N N 267 DT N3 C4 sing N N 268 DT N3 H3 sing N N 269 DT C4 O4 doub N N 270 DT C4 C5 sing N N 271 DT C5 C7 sing N N 272 DT C5 C6 doub N N 273 DT C7 H71 sing N N 274 DT C7 H72 sing N N 275 DT C7 H73 sing N N 276 DT C6 H6 sing N N 277 ERI O1 C1 sing N N 278 ERI O1 HO1 sing N N 279 ERI C1 C2 sing N N 280 ERI C1 O5 sing N N 281 ERI C1 H1 sing N N 282 ERI C2 C3 sing N N 283 ERI C2 H21 sing N N 284 ERI C2 H22 sing N N 285 ERI C3 O3 sing N N 286 ERI C3 CC3 sing N N 287 ERI C3 C4 sing N N 288 ERI O3 HO3 sing N N 289 ERI CC3 H31 sing N N 290 ERI CC3 H32 sing N N 291 ERI CC3 H33 sing N N 292 ERI C4 O4 sing N N 293 ERI C4 C5 sing N N 294 ERI C4 H4 sing N N 295 ERI O4 CO4 sing N N 296 ERI CME CO4 sing N N 297 ERI CME H41 sing N N 298 ERI CME H42 sing N N 299 ERI CME H43 sing N N 300 ERI CO4 OC4 doub N N 301 ERI C5 O5 sing N N 302 ERI C5 C6 sing N N 303 ERI C5 H5 sing N N 304 ERI C6 H61 sing N N 305 ERI C6 H62 sing N N 306 ERI C6 H63 sing N N 307 HOH O H1 sing N N 308 HOH O H2 sing N N 309 # _ndb_struct_conf_na.entry_id 5XEW _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 13 1_555 -0.467 3.776 0.726 -15.578 9.026 -63.090 1 A_DT1:DA26_B A 1 ? B 26 ? 23 3 1 A DT 2 1_555 B DA 12 1_555 -0.634 0.029 -0.010 -1.366 -4.669 -7.748 2 A_DT2:DA25_B A 2 ? B 25 ? 20 1 1 A DC 4 1_555 B DG 11 1_555 0.023 -0.185 -0.062 5.118 -15.273 -0.999 3 A_DC4:DG24_B A 4 ? B 24 ? 19 1 1 A DG 5 1_555 B DC 10 1_555 -0.010 -0.149 0.105 1.962 -12.407 0.951 4 A_DG5:DC23_B A 5 ? B 23 ? 19 1 1 A DG 8 1_555 B DC 9 1_555 -0.259 -0.165 0.159 2.918 -9.691 -0.357 5 A_DG8:DC22_B A 8 ? B 22 ? 19 1 1 A DC 9 1_555 B DG 8 1_555 0.292 -0.157 0.183 -2.173 -10.388 -0.295 6 A_DC9:DG21_B A 9 ? B 21 ? 19 1 1 A DC 10 1_555 B DG 5 1_555 0.000 -0.141 0.041 -0.883 -12.671 1.477 7 A_DC10:DG18_B A 10 ? B 18 ? 19 1 1 A DG 11 1_555 B DC 4 1_555 -0.123 -0.248 -0.022 -3.707 -14.534 0.374 8 A_DG11:DC17_B A 11 ? B 17 ? 19 1 1 A DA 12 1_555 B DT 2 1_555 0.679 -0.124 -0.311 -5.895 -0.762 -8.328 9 A_DA12:DT15_B A 12 ? B 15 ? 20 1 1 A DA 13 1_555 B DT 1 1_555 1.019 -3.481 -0.202 10.277 -5.553 71.782 10 A_DA13:DT14_B A 13 ? B 14 ? 23 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 13 1_555 A DT 2 1_555 B DA 12 1_555 -0.973 3.230 3.310 3.302 4.217 -21.106 -10.110 -1.359 2.738 -11.280 8.832 -21.767 1 AA_DT1DT2:DA25DA26_BB A 1 ? B 26 ? A 2 ? B 25 ? 1 A DT 2 1_555 B DA 12 1_555 A DC 4 1_555 B DG 11 1_555 0.348 -0.181 3.268 1.661 -4.814 35.271 0.407 -0.326 3.276 -7.894 -2.724 35.625 2 AA_DT2DC4:DG24DA25_BB A 2 ? B 25 ? A 4 ? B 24 ? 1 A DC 4 1_555 B DG 11 1_555 A DG 5 1_555 B DC 10 1_555 0.758 0.191 3.521 -0.927 5.932 38.984 -0.472 -1.242 3.493 8.825 1.379 39.426 3 AA_DC4DG5:DC23DG24_BB A 4 ? B 24 ? A 5 ? B 23 ? 1 A DG 5 1_555 B DC 10 1_555 A DG 8 1_555 B DC 9 1_555 1.922 -2.001 3.145 0.037 10.526 18.875 -8.736 -5.119 1.790 29.326 -0.104 21.588 4 AA_DG5DG8:DC22DC23_BB A 5 ? B 23 ? A 8 ? B 22 ? 1 A DG 8 1_555 B DC 9 1_555 A DC 9 1_555 B DG 8 1_555 -0.020 -2.104 3.440 -0.223 -3.449 36.602 -2.828 -0.001 3.616 -5.476 0.354 36.759 5 AA_DG8DC9:DG21DC22_BB A 8 ? B 22 ? A 9 ? B 21 ? 1 A DC 9 1_555 B DG 8 1_555 A DC 10 1_555 B DG 5 1_555 -1.915 -2.007 3.142 0.450 9.949 18.491 -8.893 5.412 1.788 28.443 -1.288 20.982 6 AA_DC9DC10:DG18DG21_BB A 9 ? B 21 ? A 10 ? B 18 ? 1 A DC 10 1_555 B DG 5 1_555 A DG 11 1_555 B DC 4 1_555 -0.680 0.293 3.525 0.334 5.809 38.639 -0.320 1.061 3.525 8.719 -0.502 39.058 7 AA_DC10DG11:DC17DG18_BB A 10 ? B 18 ? A 11 ? B 17 ? 1 A DG 11 1_555 B DC 4 1_555 A DA 12 1_555 B DT 2 1_555 -0.422 0.001 3.499 1.911 -4.735 37.520 0.650 0.912 3.449 -7.319 -2.954 37.853 8 AA_DG11DA12:DT15DC17_BB A 11 ? B 17 ? A 12 ? B 15 ? 1 A DA 12 1_555 B DT 2 1_555 A DA 13 1_555 B DT 1 1_555 -2.098 3.458 -2.465 171.648 -26.689 -126.817 -1.793 -1.458 -1.040 13.396 86.152 -177.186 9 AA_DA12DA13:DT14DT15_BB A 12 ? B 15 ? A 13 ? B 14 ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 CDR 1 n 2 CDR 2 n 2 ERI 3 n 3 ARI 1 n 3 1GL 2 n # _atom_sites.entry_id 5XEW _atom_sites.fract_transf_matrix[1][1] 0.020708 _atom_sites.fract_transf_matrix[1][2] 0.011956 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023911 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011997 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N NI O P # loop_