HEADER SUGAR BINDING PROTEIN 10-APR-17 5XFD TITLE SERIAL FEMTOSECOND X-RAY STRUCTURE OF AGROCYBE CYLINDRACEA GALECTIN TITLE 2 WITH LACTOSE SOLVED BY SE-SAD USING XFEL (REFINED AGAINST 60,000 TITLE 3 PATTERNS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALACTOSIDE-BINDING LECTIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROCYBE CYLINDRACEA; SOURCE 3 ORGANISM_TAXID: 64608; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET27B KEYWDS SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.KUWABARA,Y.FUMIAKI,R.KATO REVDAT 8 15-NOV-23 5XFD 1 REMARK REVDAT 7 06-SEP-23 5XFD 1 REMARK REVDAT 6 14-OCT-20 5XFD 1 HETSYN REVDAT 5 05-AUG-20 5XFD 1 REMARK LINK ATOM REVDAT 4 29-JUL-20 5XFD 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 24-JAN-18 5XFD 1 REMARK REVDAT 2 25-OCT-17 5XFD 1 JRNL REMARK REVDAT 1 30-AUG-17 5XFD 0 JRNL AUTH K.YAMASHITA,N.KUWABARA,T.NAKANE,T.MURAI,E.MIZOHATA, JRNL AUTH 2 M.SUGAHARA,D.PAN,T.MASUDA,M.SUZUKI,T.SATO,A.KODAN, JRNL AUTH 3 T.YAMAGUCHI,E.NANGO,T.TANAKA,K.TONO,Y.JOTI,T.KAMESHIMA, JRNL AUTH 4 T.HATSUI,M.YABASHI,H.MANYA,T.ENDO,R.KATO,T.SENDA,H.KATO, JRNL AUTH 5 S.IWATA,H.AGO,M.YAMAMOTO,F.YUMOTO,T.NAKATSU JRNL TITL EXPERIMENTAL PHASE DETERMINATION WITH SELENOMETHIONINE OR JRNL TITL 2 MERCURY-DERIVATIZATION IN SERIAL FEMTOSECOND CRYSTALLOGRAPHY JRNL REF IUCRJ V. 4 639 2017 JRNL REFN ESSN 2052-2525 JRNL PMID 28989719 JRNL DOI 10.1107/S2052252517008557 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 9.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 150732 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.163 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 7399 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 9.4888 - 4.4954 1.00 4753 259 0.1368 0.1517 REMARK 3 2 4.4954 - 3.6336 1.00 4774 254 0.1200 0.1311 REMARK 3 3 3.6336 - 3.1943 1.00 4783 248 0.1252 0.1291 REMARK 3 4 3.1943 - 2.9115 1.00 4793 238 0.1409 0.1921 REMARK 3 5 2.9115 - 2.7080 1.00 4747 238 0.1459 0.1516 REMARK 3 6 2.7080 - 2.5516 1.00 4812 255 0.1431 0.1550 REMARK 3 7 2.5516 - 2.4261 1.00 4789 226 0.1455 0.1728 REMARK 3 8 2.4261 - 2.3221 1.00 4768 269 0.1432 0.1573 REMARK 3 9 2.3221 - 2.2339 1.00 4768 257 0.1344 0.1426 REMARK 3 10 2.2339 - 2.1577 1.00 4753 227 0.1330 0.1583 REMARK 3 11 2.1577 - 2.0910 1.00 4753 271 0.1395 0.1492 REMARK 3 12 2.0910 - 2.0318 1.00 4789 252 0.1397 0.1587 REMARK 3 13 2.0318 - 1.9788 1.00 4771 260 0.1390 0.1717 REMARK 3 14 1.9788 - 1.9310 1.00 4762 260 0.1417 0.1329 REMARK 3 15 1.9310 - 1.8874 1.00 4751 241 0.1503 0.1633 REMARK 3 16 1.8874 - 1.8476 1.00 4831 238 0.1583 0.1687 REMARK 3 17 1.8476 - 1.8109 1.00 4719 269 0.1592 0.1852 REMARK 3 18 1.8109 - 1.7769 1.00 4802 239 0.1596 0.1957 REMARK 3 19 1.7769 - 1.7454 1.00 4752 272 0.1676 0.1762 REMARK 3 20 1.7454 - 1.7160 1.00 4843 198 0.1825 0.2035 REMARK 3 21 1.7160 - 1.6884 1.00 4748 229 0.1863 0.2030 REMARK 3 22 1.6884 - 1.6626 1.00 4800 239 0.1981 0.2031 REMARK 3 23 1.6626 - 1.6383 1.00 4829 207 0.2083 0.2394 REMARK 3 24 1.6383 - 1.6153 1.00 4761 260 0.2134 0.2193 REMARK 3 25 1.6153 - 1.5936 1.00 4819 221 0.2291 0.2398 REMARK 3 26 1.5936 - 1.5730 1.00 4711 276 0.2351 0.2231 REMARK 3 27 1.5730 - 1.5534 1.00 4817 258 0.2388 0.2469 REMARK 3 28 1.5534 - 1.5348 1.00 4749 228 0.2582 0.2732 REMARK 3 29 1.5348 - 1.5170 1.00 4791 262 0.2662 0.2458 REMARK 3 30 1.5170 - 1.5000 1.00 4795 248 0.2799 0.2822 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 2589 REMARK 3 ANGLE : 1.478 3565 REMARK 3 CHIRALITY : 0.121 459 REMARK 3 PLANARITY : 0.008 448 REMARK 3 DIHEDRAL : 11.909 1536 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): -60.8664 6.0145 11.9477 REMARK 3 T TENSOR REMARK 3 T11: 0.1591 T22: 0.1147 REMARK 3 T33: 0.1971 T12: 0.0007 REMARK 3 T13: 0.0272 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 2.6877 L22: 5.9803 REMARK 3 L33: 4.9666 L12: 0.9696 REMARK 3 L13: -1.0686 L23: -3.0589 REMARK 3 S TENSOR REMARK 3 S11: -0.0038 S12: -0.0247 S13: -0.0508 REMARK 3 S21: 0.1592 S22: 0.1629 S23: 0.4705 REMARK 3 S31: 0.1411 S32: -0.2454 S33: -0.0560 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.1085 16.4845 8.0505 REMARK 3 T TENSOR REMARK 3 T11: 0.1610 T22: 0.1190 REMARK 3 T33: 0.1282 T12: 0.0072 REMARK 3 T13: 0.0168 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.2866 L22: 1.7251 REMARK 3 L33: 1.1167 L12: 0.0740 REMARK 3 L13: 0.1789 L23: 0.2209 REMARK 3 S TENSOR REMARK 3 S11: 0.0490 S12: 0.0906 S13: 0.1415 REMARK 3 S21: -0.1023 S22: 0.0211 S23: -0.0179 REMARK 3 S31: -0.0597 S32: 0.0582 S33: -0.0555 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.2577 20.8869 12.3826 REMARK 3 T TENSOR REMARK 3 T11: 0.1320 T22: 0.1394 REMARK 3 T33: 0.1507 T12: -0.0265 REMARK 3 T13: 0.0006 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 1.7600 L22: 4.3789 REMARK 3 L33: 2.6520 L12: -0.1147 REMARK 3 L13: -0.0708 L23: 1.6859 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: -0.1168 S13: 0.0577 REMARK 3 S21: -0.0489 S22: 0.1134 S23: -0.1842 REMARK 3 S31: -0.0380 S32: 0.2709 S33: -0.1279 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.2334 6.0380 11.2665 REMARK 3 T TENSOR REMARK 3 T11: 0.1924 T22: 0.1424 REMARK 3 T33: 0.1717 T12: 0.0397 REMARK 3 T13: -0.0021 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 2.7860 L22: 2.2983 REMARK 3 L33: 4.6038 L12: 0.2614 REMARK 3 L13: -0.1727 L23: -1.1457 REMARK 3 S TENSOR REMARK 3 S11: 0.0166 S12: 0.0971 S13: -0.2155 REMARK 3 S21: -0.0177 S22: -0.1021 S23: -0.1984 REMARK 3 S31: 0.5130 S32: 0.5012 S33: 0.0329 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.1457 9.0201 15.9789 REMARK 3 T TENSOR REMARK 3 T11: 0.1782 T22: 0.1408 REMARK 3 T33: 0.1755 T12: 0.0094 REMARK 3 T13: -0.0121 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 2.3668 L22: 4.2969 REMARK 3 L33: 2.8958 L12: -0.1472 REMARK 3 L13: -0.0531 L23: 1.7981 REMARK 3 S TENSOR REMARK 3 S11: 0.0403 S12: -0.0869 S13: -0.0354 REMARK 3 S21: 0.2166 S22: 0.0201 S23: -0.3657 REMARK 3 S31: 0.0964 S32: 0.1756 S33: -0.1008 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): -51.3770 18.3898 9.9228 REMARK 3 T TENSOR REMARK 3 T11: 0.1504 T22: 0.0721 REMARK 3 T33: 0.1512 T12: 0.0158 REMARK 3 T13: 0.0158 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 2.3844 L22: 2.2127 REMARK 3 L33: 2.7215 L12: 0.2117 REMARK 3 L13: 0.2357 L23: 1.1200 REMARK 3 S TENSOR REMARK 3 S11: 0.0924 S12: 0.0768 S13: 0.1572 REMARK 3 S21: -0.0919 S22: -0.0636 S23: 0.0302 REMARK 3 S31: -0.2446 S32: -0.1354 S33: 0.0262 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 151 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): -56.2295 6.0837 11.7263 REMARK 3 T TENSOR REMARK 3 T11: 0.1783 T22: 0.1319 REMARK 3 T33: 0.1540 T12: 0.0126 REMARK 3 T13: 0.0140 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.7992 L22: 3.0608 REMARK 3 L33: 9.8863 L12: 1.1071 REMARK 3 L13: -1.9086 L23: -4.3756 REMARK 3 S TENSOR REMARK 3 S11: 0.0571 S12: 0.0216 S13: 0.0583 REMARK 3 S21: -0.1198 S22: 0.0033 S23: 0.2843 REMARK 3 S31: 0.4121 S32: 0.1416 S33: -0.1160 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.9901 -8.8927 12.9924 REMARK 3 T TENSOR REMARK 3 T11: 0.1474 T22: 0.1317 REMARK 3 T33: 0.1687 T12: 0.0040 REMARK 3 T13: 0.0022 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.3904 L22: 2.6310 REMARK 3 L33: 1.1271 L12: -0.0050 REMARK 3 L13: 0.2264 L23: -0.0266 REMARK 3 S TENSOR REMARK 3 S11: 0.0199 S12: -0.0554 S13: -0.0283 REMARK 3 S21: 0.0624 S22: 0.0209 S23: -0.3091 REMARK 3 S31: -0.0492 S32: 0.1461 S33: -0.0061 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -58.9938 -9.1490 3.4102 REMARK 3 T TENSOR REMARK 3 T11: 0.2182 T22: 0.1750 REMARK 3 T33: 0.1471 T12: 0.0105 REMARK 3 T13: -0.0166 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 1.6306 L22: 3.5788 REMARK 3 L33: 1.1570 L12: -0.5242 REMARK 3 L13: -0.9862 L23: -0.9617 REMARK 3 S TENSOR REMARK 3 S11: 0.0681 S12: 0.3368 S13: -0.0640 REMARK 3 S21: -0.4394 S22: 0.0710 S23: 0.2152 REMARK 3 S31: 0.1822 S32: -0.1553 S33: -0.3713 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 48 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): -59.9630 -20.9980 13.0085 REMARK 3 T TENSOR REMARK 3 T11: 0.1532 T22: 0.1111 REMARK 3 T33: 0.1638 T12: 0.0030 REMARK 3 T13: 0.0028 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 2.1841 L22: 4.1790 REMARK 3 L33: 1.4877 L12: 0.6409 REMARK 3 L13: -0.4500 L23: -1.0136 REMARK 3 S TENSOR REMARK 3 S11: -0.0168 S12: 0.0130 S13: -0.1724 REMARK 3 S21: -0.0161 S22: 0.0406 S23: 0.0536 REMARK 3 S31: 0.0488 S32: -0.0225 S33: -0.0302 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 87 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): -69.6431 -9.1913 6.1267 REMARK 3 T TENSOR REMARK 3 T11: 0.2312 T22: 0.2721 REMARK 3 T33: 0.3398 T12: 0.0477 REMARK 3 T13: -0.0425 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 1.9839 L22: 4.9874 REMARK 3 L33: 3.9180 L12: 0.6313 REMARK 3 L13: -0.8907 L23: -2.6839 REMARK 3 S TENSOR REMARK 3 S11: 0.2090 S12: 0.1676 S13: 0.2833 REMARK 3 S21: -0.1105 S22: 0.0265 S23: 0.8670 REMARK 3 S31: -0.3179 S32: -0.1642 S33: -0.3244 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 103 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): -60.0889 -5.8422 15.4412 REMARK 3 T TENSOR REMARK 3 T11: 0.1692 T22: 0.0971 REMARK 3 T33: 0.1575 T12: 0.0077 REMARK 3 T13: 0.0200 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 3.1067 L22: 2.7399 REMARK 3 L33: 1.9828 L12: -0.7938 REMARK 3 L13: 1.1926 L23: 0.1855 REMARK 3 S TENSOR REMARK 3 S11: -0.0055 S12: -0.1418 S13: 0.0873 REMARK 3 S21: 0.1535 S22: -0.0104 S23: 0.1317 REMARK 3 S31: -0.1261 S32: -0.1277 S33: 0.0363 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 121 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): -59.2684 -13.5299 20.0474 REMARK 3 T TENSOR REMARK 3 T11: 0.2252 T22: 0.1464 REMARK 3 T33: 0.1712 T12: -0.0117 REMARK 3 T13: 0.0246 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 1.6997 L22: 2.1342 REMARK 3 L33: 0.5440 L12: 0.3072 REMARK 3 L13: -0.5854 L23: -0.6296 REMARK 3 S TENSOR REMARK 3 S11: 0.0794 S12: -0.1739 S13: -0.1594 REMARK 3 S21: 0.2446 S22: -0.0417 S23: 0.2183 REMARK 3 S31: -0.0066 S32: 0.0021 S33: 0.0485 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 136 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): -55.0726 -15.4654 2.8153 REMARK 3 T TENSOR REMARK 3 T11: 0.2293 T22: 0.1565 REMARK 3 T33: 0.1602 T12: 0.0076 REMARK 3 T13: 0.0048 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 2.9827 L22: 4.0574 REMARK 3 L33: 1.3235 L12: -1.2179 REMARK 3 L13: -0.5012 L23: -1.8282 REMARK 3 S TENSOR REMARK 3 S11: 0.1409 S12: 0.2928 S13: -0.1628 REMARK 3 S21: -0.4749 S22: -0.0090 S23: 0.1029 REMARK 3 S31: 0.2798 S32: -0.0888 S33: -0.1875 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 151 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.0217 -4.2933 12.3341 REMARK 3 T TENSOR REMARK 3 T11: 0.2174 T22: 0.1445 REMARK 3 T33: 0.1652 T12: 0.0007 REMARK 3 T13: 0.0048 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.2606 L22: 1.0941 REMARK 3 L33: 5.7871 L12: 0.6693 REMARK 3 L13: 2.4852 L23: 1.2394 REMARK 3 S TENSOR REMARK 3 S11: 0.0553 S12: -0.0034 S13: -0.0759 REMARK 3 S21: 0.0474 S22: 0.0775 S23: -0.2275 REMARK 3 S31: -0.2280 S32: 0.1554 S33: -0.1860 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SF FILE CONTAINS FRIEDEL PAIRS UNDER REMARK 3 I/F_MINUS AND I/F_PLUS COLUMNS. REMARK 4 REMARK 4 5XFD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-APR-17. REMARK 100 THE DEPOSITION ID IS D_1300003423. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : BL3 REMARK 200 X-RAY GENERATOR MODEL : SACLA BEAMLINE BL3 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MPCCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTFEL REMARK 200 DATA SCALING SOFTWARE : CRYSTFEL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 150810 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 9.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 443.3 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 9.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 742.1 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 12.72 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG1500, PH 7.5, BATCH MODE, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.30667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.15333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.73000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 12.57667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 62.88333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -9 REMARK 465 ASP A -8 REMARK 465 TYR A -7 REMARK 465 LYS A -6 REMARK 465 ASP A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 LYS A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 LYS A 162 REMARK 465 LEU A 163 REMARK 465 ALA A 164 REMARK 465 ALA A 165 REMARK 465 ALA A 166 REMARK 465 LEU A 167 REMARK 465 GLU A 168 REMARK 465 MSE B -9 REMARK 465 ASP B -8 REMARK 465 TYR B -7 REMARK 465 LYS B -6 REMARK 465 ASP B -5 REMARK 465 ASP B -4 REMARK 465 ASP B -3 REMARK 465 ASP B -2 REMARK 465 LYS B -1 REMARK 465 HIS B 0 REMARK 465 MSE B 1 REMARK 465 ALA B 40 REMARK 465 GLY B 41 REMARK 465 ALA B 42 REMARK 465 GLY B 43 REMARK 465 SER B 44 REMARK 465 PRO B 45 REMARK 465 THR B 142 REMARK 465 GLU B 143 REMARK 465 GLY B 144 REMARK 465 LYS B 162 REMARK 465 LEU B 163 REMARK 465 ALA B 164 REMARK 465 ALA B 165 REMARK 465 ALA B 166 REMARK 465 LEU B 167 REMARK 465 GLU B 168 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 GLN A 68 CG CD OE1 NE2 REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 GLN B 68 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 365 O HOH A 405 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O6 NDG D 1 O HOH A 335 5445 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 84 -155.14 -88.39 REMARK 500 ASN A 91 79.55 75.96 REMARK 500 ASN A 91 85.89 70.29 REMARK 500 ASN A 119 -110.99 57.16 REMARK 500 LEU B 84 -152.21 -92.31 REMARK 500 ASN B 91 83.84 76.14 REMARK 500 ASN B 91 89.67 70.33 REMARK 500 ASN B 119 -111.33 56.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5XFC RELATED DB: PDB DBREF 5XFD A -9 168 PDB 5XFD 5XFD -9 168 DBREF 5XFD B -9 168 PDB 5XFD 5XFD -9 168 SEQRES 1 A 178 MSE ASP TYR LYS ASP ASP ASP ASP LYS HIS MSE THR THR SEQRES 2 A 178 SER ALA VAL ASN ILE TYR ASN ILE SER ALA GLY ALA SER SEQRES 3 A 178 VAL ASP LEU ALA ALA PRO VAL THR THR GLY ASP ILE VAL SEQRES 4 A 178 THR PHE PHE SER SER ALA LEU ASN LEU SER ALA GLY ALA SEQRES 5 A 178 GLY SER PRO ASN ASN THR ALA LEU ASN LEU LEU SER GLU SEQRES 6 A 178 ASN GLY ALA TYR LEU LEU HIS ILE ALA PHE ARG LEU GLN SEQRES 7 A 178 GLU ASN VAL ILE VAL PHE ASN SER ARG GLN PRO ASN ALA SEQRES 8 A 178 PRO TRP LEU VAL GLU GLN ARG VAL SER ASN VAL ALA ASN SEQRES 9 A 178 GLN PHE ILE GLY SER GLY GLY LYS ALA MSE VAL THR VAL SEQRES 10 A 178 PHE ASP HIS GLY ASP LYS TYR GLN VAL VAL ILE ASN GLU SEQRES 11 A 178 LYS THR VAL ILE GLN TYR THR LYS GLN ILE SER GLY THR SEQRES 12 A 178 THR SER SER LEU SER TYR ASN SER THR GLU GLY THR SER SEQRES 13 A 178 ILE PHE SER THR VAL VAL GLU ALA VAL THR TYR THR GLY SEQRES 14 A 178 LEU ALA LYS LEU ALA ALA ALA LEU GLU SEQRES 1 B 178 MSE ASP TYR LYS ASP ASP ASP ASP LYS HIS MSE THR THR SEQRES 2 B 178 SER ALA VAL ASN ILE TYR ASN ILE SER ALA GLY ALA SER SEQRES 3 B 178 VAL ASP LEU ALA ALA PRO VAL THR THR GLY ASP ILE VAL SEQRES 4 B 178 THR PHE PHE SER SER ALA LEU ASN LEU SER ALA GLY ALA SEQRES 5 B 178 GLY SER PRO ASN ASN THR ALA LEU ASN LEU LEU SER GLU SEQRES 6 B 178 ASN GLY ALA TYR LEU LEU HIS ILE ALA PHE ARG LEU GLN SEQRES 7 B 178 GLU ASN VAL ILE VAL PHE ASN SER ARG GLN PRO ASN ALA SEQRES 8 B 178 PRO TRP LEU VAL GLU GLN ARG VAL SER ASN VAL ALA ASN SEQRES 9 B 178 GLN PHE ILE GLY SER GLY GLY LYS ALA MSE VAL THR VAL SEQRES 10 B 178 PHE ASP HIS GLY ASP LYS TYR GLN VAL VAL ILE ASN GLU SEQRES 11 B 178 LYS THR VAL ILE GLN TYR THR LYS GLN ILE SER GLY THR SEQRES 12 B 178 THR SER SER LEU SER TYR ASN SER THR GLU GLY THR SER SEQRES 13 B 178 ILE PHE SER THR VAL VAL GLU ALA VAL THR TYR THR GLY SEQRES 14 B 178 LEU ALA LYS LEU ALA ALA ALA LEU GLU HET MSE A 104 16 HET MSE B 104 16 HET NDG C 1 15 HET GAL C 2 11 HET FUC C 3 10 HET A2G C 4 14 HET NDG D 1 15 HET GAL D 2 11 HET FUC D 3 10 HET A2G D 4 14 HETNAM MSE SELENOMETHIONINE HETNAM NDG 2-ACETAMIDO-2-DEOXY-ALPHA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETSYN NDG N-ACETYL-ALPHA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NDG ALPHA-D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2- HETSYN 3 NDG ACETAMIDO-2-DEOXY-GLUCOSE; 2-(ACETYLAMINO)-2-DEOXY-A- HETSYN 4 NDG D-GLUCOPYRANOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 3 NDG 2(C8 H15 N O6) FORMUL 3 GAL 2(C6 H12 O6) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 3 A2G 2(C8 H15 N O6) FORMUL 5 HOH *232(H2 O) HELIX 1 AA1 VAL A 92 ILE A 97 5 6 HELIX 2 AA2 ASN B 91 PHE B 96 1 6 SHEET 1 AA1 6 ALA A 5 SER A 12 0 SHEET 2 AA1 6 VAL A 151 THR A 158 -1 O VAL A 152 N ILE A 11 SHEET 3 AA1 6 ILE A 28 SER A 33 -1 N PHE A 32 O GLU A 153 SHEET 4 AA1 6 ALA A 103 ASP A 109 -1 O VAL A 107 N VAL A 29 SHEET 5 AA1 6 LYS A 113 ILE A 118 -1 O VAL A 117 N THR A 106 SHEET 6 AA1 6 LYS A 121 THR A 127 -1 O TYR A 126 N TYR A 114 SHEET 1 AA2 6 ALA A 15 VAL A 23 0 SHEET 2 AA2 6 THR A 134 ASN A 140 -1 O THR A 134 N VAL A 23 SHEET 3 AA2 6 THR A 48 LEU A 53 -1 N ALA A 49 O ASN A 140 SHEET 4 AA2 6 TYR A 59 ARG A 66 -1 O PHE A 65 N THR A 48 SHEET 5 AA2 6 VAL A 71 ARG A 77 -1 O VAL A 73 N ALA A 64 SHEET 6 AA2 6 GLN A 87 SER A 90 -1 O GLN A 87 N PHE A 74 SHEET 1 AA3 6 ALA B 5 SER B 12 0 SHEET 2 AA3 6 VAL B 151 THR B 158 -1 O VAL B 152 N ILE B 11 SHEET 3 AA3 6 ILE B 28 SER B 33 -1 N PHE B 32 O GLU B 153 SHEET 4 AA3 6 ALA B 103 ASP B 109 -1 O VAL B 105 N PHE B 31 SHEET 5 AA3 6 LYS B 113 ILE B 118 -1 O VAL B 117 N THR B 106 SHEET 6 AA3 6 LYS B 121 THR B 127 -1 O TYR B 126 N TYR B 114 SHEET 1 AA4 6 ALA B 15 VAL B 23 0 SHEET 2 AA4 6 THR B 134 ASN B 140 -1 O THR B 134 N VAL B 23 SHEET 3 AA4 6 THR B 48 LEU B 53 -1 N LEU B 53 O SER B 136 SHEET 4 AA4 6 TYR B 59 ARG B 66 -1 O PHE B 65 N THR B 48 SHEET 5 AA4 6 VAL B 71 ARG B 77 -1 O VAL B 73 N ALA B 64 SHEET 6 AA4 6 GLN B 87 SER B 90 -1 O GLN B 87 N PHE B 74 LINK C ALA A 103 N AMSE A 104 1555 1555 1.33 LINK C ALA A 103 N BMSE A 104 1555 1555 1.34 LINK C AMSE A 104 N VAL A 105 1555 1555 1.34 LINK C BMSE A 104 N VAL A 105 1555 1555 1.33 LINK C ALA B 103 N AMSE B 104 1555 1555 1.33 LINK C ALA B 103 N BMSE B 104 1555 1555 1.34 LINK C AMSE B 104 N VAL B 105 1555 1555 1.33 LINK C BMSE B 104 N VAL B 105 1555 1555 1.34 LINK O4 NDG C 1 C1 GAL C 2 1555 1555 1.42 LINK O2 GAL C 2 C1 FUC C 3 1555 1555 1.44 LINK O3 GAL C 2 C1 A2G C 4 1555 1555 1.44 LINK O4 NDG D 1 C1 GAL D 2 1555 1555 1.39 LINK O2 GAL D 2 C1 FUC D 3 1555 1555 1.46 LINK O3 GAL D 2 C1 A2G D 4 1555 1555 1.44 CRYST1 105.795 105.795 75.460 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009452 0.005457 0.000000 0.00000 SCALE2 0.000000 0.010915 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013252 0.00000