data_5XFH # _entry.id 5XFH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5XFH pdb_00005xfh 10.2210/pdb5xfh/pdb WWPDB D_1300003434 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 5XFI _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5XFH _pdbx_database_status.recvd_initial_deposition_date 2017-04-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Nagae, M.' 1 ? 'Yamaguchi, Y.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Glycobiology _citation.journal_id_ASTM ? _citation.journal_id_CSD 9999 _citation.journal_id_ISSN 1460-2423 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 27 _citation.language ? _citation.page_first 1120 _citation.page_last 1133 _citation.title 'Distinct roles for each N-glycan branch interacting with mannose-binding type Jacalin-related lectins Orysata and Calsepa.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/glycob/cwx081 _citation.pdbx_database_id_PubMed 28973127 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nagae, M.' 1 ? primary 'Mishra, S.K.' 2 ? primary 'Hanashima, S.' 3 ? primary 'Tateno, H.' 4 ? primary 'Yamaguchi, Y.' 5 ? # _cell.entry_id 5XFH _cell.length_a 45.783 _cell.length_b 71.620 _cell.length_c 97.201 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XFH _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Salt stress-induced protein' 15214.007 2 ? ? ? ? 2 branched man ;beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose ; 1072.964 1 ? ? ? ? 3 water nat water 18.015 156 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Salt protein,Protein lectin-like,Protein mannose-binding lectin' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MTLVKIGPWGGNGGSAQDISVPPKKLLGVTIYSSDAIRSIAFNYIGVDGQEYAIGPWGGGESTSTEIKLGSSEQIKEISG THGPVYDLADIVTYLKIVTSANNTYEAGVPNGKEFSIPLQDSGHVVGFFGRSGTLIDAIGIYVHP ; _entity_poly.pdbx_seq_one_letter_code_can ;MTLVKIGPWGGNGGSAQDISVPPKKLLGVTIYSSDAIRSIAFNYIGVDGQEYAIGPWGGGESTSTEIKLGSSEQIKEISG THGPVYDLADIVTYLKIVTSANNTYEAGVPNGKEFSIPLQDSGHVVGFFGRSGTLIDAIGIYVHP ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 THR n 1 3 LEU n 1 4 VAL n 1 5 LYS n 1 6 ILE n 1 7 GLY n 1 8 PRO n 1 9 TRP n 1 10 GLY n 1 11 GLY n 1 12 ASN n 1 13 GLY n 1 14 GLY n 1 15 SER n 1 16 ALA n 1 17 GLN n 1 18 ASP n 1 19 ILE n 1 20 SER n 1 21 VAL n 1 22 PRO n 1 23 PRO n 1 24 LYS n 1 25 LYS n 1 26 LEU n 1 27 LEU n 1 28 GLY n 1 29 VAL n 1 30 THR n 1 31 ILE n 1 32 TYR n 1 33 SER n 1 34 SER n 1 35 ASP n 1 36 ALA n 1 37 ILE n 1 38 ARG n 1 39 SER n 1 40 ILE n 1 41 ALA n 1 42 PHE n 1 43 ASN n 1 44 TYR n 1 45 ILE n 1 46 GLY n 1 47 VAL n 1 48 ASP n 1 49 GLY n 1 50 GLN n 1 51 GLU n 1 52 TYR n 1 53 ALA n 1 54 ILE n 1 55 GLY n 1 56 PRO n 1 57 TRP n 1 58 GLY n 1 59 GLY n 1 60 GLY n 1 61 GLU n 1 62 SER n 1 63 THR n 1 64 SER n 1 65 THR n 1 66 GLU n 1 67 ILE n 1 68 LYS n 1 69 LEU n 1 70 GLY n 1 71 SER n 1 72 SER n 1 73 GLU n 1 74 GLN n 1 75 ILE n 1 76 LYS n 1 77 GLU n 1 78 ILE n 1 79 SER n 1 80 GLY n 1 81 THR n 1 82 HIS n 1 83 GLY n 1 84 PRO n 1 85 VAL n 1 86 TYR n 1 87 ASP n 1 88 LEU n 1 89 ALA n 1 90 ASP n 1 91 ILE n 1 92 VAL n 1 93 THR n 1 94 TYR n 1 95 LEU n 1 96 LYS n 1 97 ILE n 1 98 VAL n 1 99 THR n 1 100 SER n 1 101 ALA n 1 102 ASN n 1 103 ASN n 1 104 THR n 1 105 TYR n 1 106 GLU n 1 107 ALA n 1 108 GLY n 1 109 VAL n 1 110 PRO n 1 111 ASN n 1 112 GLY n 1 113 LYS n 1 114 GLU n 1 115 PHE n 1 116 SER n 1 117 ILE n 1 118 PRO n 1 119 LEU n 1 120 GLN n 1 121 ASP n 1 122 SER n 1 123 GLY n 1 124 HIS n 1 125 VAL n 1 126 VAL n 1 127 GLY n 1 128 PHE n 1 129 PHE n 1 130 GLY n 1 131 ARG n 1 132 SER n 1 133 GLY n 1 134 THR n 1 135 LEU n 1 136 ILE n 1 137 ASP n 1 138 ALA n 1 139 ILE n 1 140 GLY n 1 141 ILE n 1 142 TYR n 1 143 VAL n 1 144 HIS n 1 145 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 145 _entity_src_gen.gene_src_common_name Rice _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'SALT, ML, Os01g0348900, LOC_Os01g24710, B1051E10.18, P0440D10.39' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Oryza sativa Japonica Group' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 39947 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SALT_ORYSJ _struct_ref.pdbx_db_accession Q0JMY8 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTLVKIGPWGGNGGSAQDISVPPKKLLGVTIYSSDAIRSIAFNYIGVDGQEYAIGPWGGGEGTSTEIKLGSSEQIKEISG THGPVYDLADIVTYLKIVTSANNTYEAGVPNGKEFSIPLQDSGHVVGFFGRSGTLIDAIGIYVHP ; _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5XFH A 1 ? 145 ? Q0JMY8 1 ? 145 ? 1 145 2 1 5XFH B 1 ? 145 ? Q0JMY8 1 ? 145 ? 1 145 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5XFH SER A 62 ? UNP Q0JMY8 GLY 62 'see sequence details' 62 1 2 5XFH SER B 62 ? UNP Q0JMY8 GLY 62 'see sequence details' 62 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5XFH _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.62 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 53.03 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M bis-tris (pH 5.5), 0.1 M ammonium acetate, 17% (w/v) polyethylene glycol 10000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 95 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-02-21 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-5A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL-5A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5XFH _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.90 _reflns.d_resolution_low 100 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 25693 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.046 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 47.3 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.93 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 6.0 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1235 _reflns_shell.percent_possible_all 99.9 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 7.8 _reflns_shell.pdbx_Rsym_value 0.368 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5XFH _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 25640 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.325 _refine.ls_d_res_high 1.903 _refine.ls_percent_reflns_obs 99.51 _refine.ls_R_factor_obs 0.1911 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1894 _refine.ls_R_factor_R_free 0.2200 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.09 _refine.ls_number_reflns_R_free 1305 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model 1XXQ _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.21 _refine.pdbx_overall_phase_error 23.01 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2117 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 73 _refine_hist.number_atoms_solvent 156 _refine_hist.number_atoms_total 2346 _refine_hist.d_res_high 1.903 _refine_hist.d_res_low 33.325 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.012 ? ? 2257 'X-RAY DIFFRACTION' ? f_angle_d 1.398 ? ? 3082 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 10.918 ? ? 1306 'X-RAY DIFFRACTION' ? f_chiral_restr 0.093 ? ? 362 'X-RAY DIFFRACTION' ? f_plane_restr 0.010 ? ? 385 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 1.9027 1.9789 2598 0.2360 98.00 0.2941 . . 134 . . 'X-RAY DIFFRACTION' . 1.9789 2.0689 2664 0.2116 99.00 0.2636 . . 131 . . 'X-RAY DIFFRACTION' . 2.0689 2.1780 2657 0.1922 99.00 0.2718 . . 158 . . 'X-RAY DIFFRACTION' . 2.1780 2.3144 2683 0.1897 100.00 0.2512 . . 126 . . 'X-RAY DIFFRACTION' . 2.3144 2.4931 2689 0.2016 100.00 0.2394 . . 144 . . 'X-RAY DIFFRACTION' . 2.4931 2.7438 2715 0.2014 100.00 0.2532 . . 136 . . 'X-RAY DIFFRACTION' . 2.7438 3.1406 2722 0.1980 100.00 0.2395 . . 150 . . 'X-RAY DIFFRACTION' . 3.1406 3.9558 2742 0.1841 100.00 0.2018 . . 151 . . 'X-RAY DIFFRACTION' . 3.9558 33.3301 2865 0.1739 100.00 0.1854 . . 175 . . # _struct.entry_id 5XFH _struct.title 'Crystal structure of Orysata lectin in complex with biantennary N-glycan' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5XFH _struct_keywords.text 'Lectin, Jacalin-related lectin, N-glycan, Glycobiology, SUGAR BINDING PROTEIN' _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C BMA . O3 ? ? ? 1_555 C MAN . C1 ? ? C BMA 1 C MAN 2 1_555 ? ? ? ? ? ? ? 1.440 ? ? covale2 covale both ? C BMA . O6 ? ? ? 1_555 C MAN . C1 ? ? C BMA 1 C MAN 5 1_555 ? ? ? ? ? ? ? 1.446 ? ? covale3 covale both ? C MAN . O2 ? ? ? 1_555 C NAG . C1 ? ? C MAN 2 C NAG 3 1_555 ? ? ? ? ? ? ? 1.427 ? ? covale4 covale both ? C NAG . O4 ? ? ? 1_555 C GAL . C1 ? ? C NAG 3 C GAL 4 1_555 ? ? ? ? ? ? ? 1.423 ? ? covale5 covale both ? C MAN . O2 ? ? ? 1_555 C NAG . C1 ? ? C MAN 5 C NAG 6 1_555 ? ? ? ? ? ? ? 1.418 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 7 A . ? GLY 7 A PRO 8 A ? PRO 8 A 1 4.47 2 GLY 55 A . ? GLY 55 A PRO 56 A ? PRO 56 A 1 3.34 3 GLY 7 B . ? GLY 7 B PRO 8 B ? PRO 8 B 1 0.65 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? AA3 ? 4 ? AA4 ? 4 ? AA5 ? 4 ? AA6 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 4 ? GLY A 10 ? VAL A 4 GLY A 10 AA1 2 ILE A 136 ? HIS A 144 ? ILE A 136 HIS A 144 AA1 3 HIS A 124 ? SER A 132 ? HIS A 124 SER A 132 AA1 4 SER A 15 ? GLN A 17 ? SER A 15 GLN A 17 AA2 1 GLU A 51 ? GLY A 58 ? GLU A 51 GLY A 58 AA2 2 ILE A 37 ? GLY A 46 ? ILE A 37 GLY A 46 AA2 3 PRO A 23 ? SER A 33 ? PRO A 23 SER A 33 AA2 4 THR A 63 ? LYS A 68 ? THR A 63 LYS A 68 AA3 1 THR A 104 ? GLY A 108 ? THR A 104 GLY A 108 AA3 2 LEU A 88 ? THR A 99 ? LEU A 88 THR A 99 AA3 3 ILE A 75 ? VAL A 85 ? ILE A 75 VAL A 85 AA3 4 LYS A 113 ? PRO A 118 ? LYS A 113 PRO A 118 AA4 1 VAL B 4 ? GLY B 10 ? VAL B 4 GLY B 10 AA4 2 ILE B 136 ? HIS B 144 ? ILE B 136 HIS B 144 AA4 3 HIS B 124 ? SER B 132 ? HIS B 124 SER B 132 AA4 4 SER B 15 ? GLN B 17 ? SER B 15 GLN B 17 AA5 1 GLU B 51 ? GLY B 58 ? GLU B 51 GLY B 58 AA5 2 ILE B 37 ? GLY B 46 ? ILE B 37 GLY B 46 AA5 3 PRO B 23 ? SER B 33 ? PRO B 23 SER B 33 AA5 4 SER B 64 ? LYS B 68 ? SER B 64 LYS B 68 AA6 1 THR B 104 ? GLY B 108 ? THR B 104 GLY B 108 AA6 2 LEU B 88 ? THR B 99 ? LEU B 88 THR B 99 AA6 3 ILE B 75 ? VAL B 85 ? ILE B 75 VAL B 85 AA6 4 LYS B 113 ? PRO B 118 ? LYS B 113 PRO B 118 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 4 ? N VAL A 4 O VAL A 143 ? O VAL A 143 AA1 2 3 O HIS A 144 ? O HIS A 144 N HIS A 124 ? N HIS A 124 AA1 3 4 O GLY A 130 ? O GLY A 130 N GLN A 17 ? N GLN A 17 AA2 1 2 O ILE A 54 ? O ILE A 54 N PHE A 42 ? N PHE A 42 AA2 2 3 O ILE A 45 ? O ILE A 45 N LYS A 24 ? N LYS A 24 AA2 3 4 N VAL A 29 ? N VAL A 29 O ILE A 67 ? O ILE A 67 AA3 1 2 O TYR A 105 ? O TYR A 105 N ILE A 97 ? N ILE A 97 AA3 2 3 O LYS A 96 ? O LYS A 96 N SER A 79 ? N SER A 79 AA3 3 4 N ILE A 78 ? N ILE A 78 O ILE A 117 ? O ILE A 117 AA4 1 2 N VAL B 4 ? N VAL B 4 O VAL B 143 ? O VAL B 143 AA4 2 3 O HIS B 144 ? O HIS B 144 N HIS B 124 ? N HIS B 124 AA4 3 4 O GLY B 130 ? O GLY B 130 N GLN B 17 ? N GLN B 17 AA5 1 2 O ILE B 54 ? O ILE B 54 N PHE B 42 ? N PHE B 42 AA5 2 3 O ILE B 45 ? O ILE B 45 N LYS B 25 ? N LYS B 25 AA5 3 4 N VAL B 29 ? N VAL B 29 O ILE B 67 ? O ILE B 67 AA6 1 2 O TYR B 105 ? O TYR B 105 N ILE B 97 ? N ILE B 97 AA6 2 3 O LEU B 88 ? O LEU B 88 N VAL B 85 ? N VAL B 85 AA6 3 4 N ILE B 78 ? N ILE B 78 O ILE B 117 ? O ILE B 117 # _atom_sites.entry_id 5XFH _atom_sites.fract_transf_matrix[1][1] 0.021842 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013963 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010288 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 LEU 3 3 3 LEU LEU A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 TRP 9 9 9 TRP TRP A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 GLN 17 17 17 GLN GLN A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 PRO 23 23 23 PRO PRO A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 TYR 32 32 32 TYR TYR A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 ILE 40 40 40 ILE ILE A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 PHE 42 42 42 PHE PHE A . n A 1 43 ASN 43 43 43 ASN ASN A . n A 1 44 TYR 44 44 44 TYR TYR A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 PRO 56 56 56 PRO PRO A . n A 1 57 TRP 57 57 57 TRP TRP A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 GLY 60 60 ? ? ? A . n A 1 61 GLU 61 61 ? ? ? A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 THR 63 63 63 THR THR A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 THR 65 65 65 THR THR A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 GLY 70 70 ? ? ? A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 GLN 74 74 74 GLN GLN A . n A 1 75 ILE 75 75 75 ILE ILE A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 HIS 82 82 82 HIS HIS A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 PRO 84 84 84 PRO PRO A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 TYR 86 86 86 TYR TYR A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 ASP 90 90 90 ASP ASP A . n A 1 91 ILE 91 91 91 ILE ILE A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 TYR 94 94 94 TYR TYR A . n A 1 95 LEU 95 95 95 LEU LEU A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 ILE 97 97 97 ILE ILE A . n A 1 98 VAL 98 98 98 VAL VAL A . n A 1 99 THR 99 99 99 THR THR A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 ASN 102 102 102 ASN ASN A . n A 1 103 ASN 103 103 103 ASN ASN A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 TYR 105 105 105 TYR TYR A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 PRO 110 110 110 PRO PRO A . n A 1 111 ASN 111 111 111 ASN ASN A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 LYS 113 113 113 LYS LYS A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 PHE 115 115 115 PHE PHE A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 ILE 117 117 117 ILE ILE A . n A 1 118 PRO 118 118 118 PRO PRO A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 GLN 120 120 120 GLN GLN A . n A 1 121 ASP 121 121 121 ASP ASP A . n A 1 122 SER 122 122 122 SER SER A . n A 1 123 GLY 123 123 123 GLY GLY A . n A 1 124 HIS 124 124 124 HIS HIS A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 GLY 127 127 127 GLY GLY A . n A 1 128 PHE 128 128 128 PHE PHE A . n A 1 129 PHE 129 129 129 PHE PHE A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 ARG 131 131 131 ARG ARG A . n A 1 132 SER 132 132 132 SER SER A . n A 1 133 GLY 133 133 133 GLY GLY A . n A 1 134 THR 134 134 134 THR THR A . n A 1 135 LEU 135 135 135 LEU LEU A . n A 1 136 ILE 136 136 136 ILE ILE A . n A 1 137 ASP 137 137 137 ASP ASP A . n A 1 138 ALA 138 138 138 ALA ALA A . n A 1 139 ILE 139 139 139 ILE ILE A . n A 1 140 GLY 140 140 140 GLY GLY A . n A 1 141 ILE 141 141 141 ILE ILE A . n A 1 142 TYR 142 142 142 TYR TYR A . n A 1 143 VAL 143 143 143 VAL VAL A . n A 1 144 HIS 144 144 144 HIS HIS A . n A 1 145 PRO 145 145 145 PRO PRO A . n B 1 1 MET 1 1 ? ? ? B . n B 1 2 THR 2 2 2 THR THR B . n B 1 3 LEU 3 3 3 LEU LEU B . n B 1 4 VAL 4 4 4 VAL VAL B . n B 1 5 LYS 5 5 5 LYS LYS B . n B 1 6 ILE 6 6 6 ILE ILE B . n B 1 7 GLY 7 7 7 GLY GLY B . n B 1 8 PRO 8 8 8 PRO PRO B . n B 1 9 TRP 9 9 9 TRP TRP B . n B 1 10 GLY 10 10 10 GLY GLY B . n B 1 11 GLY 11 11 11 GLY GLY B . n B 1 12 ASN 12 12 12 ASN ASN B . n B 1 13 GLY 13 13 13 GLY GLY B . n B 1 14 GLY 14 14 14 GLY GLY B . n B 1 15 SER 15 15 15 SER SER B . n B 1 16 ALA 16 16 16 ALA ALA B . n B 1 17 GLN 17 17 17 GLN GLN B . n B 1 18 ASP 18 18 18 ASP ASP B . n B 1 19 ILE 19 19 19 ILE ILE B . n B 1 20 SER 20 20 20 SER SER B . n B 1 21 VAL 21 21 21 VAL VAL B . n B 1 22 PRO 22 22 22 PRO PRO B . n B 1 23 PRO 23 23 23 PRO PRO B . n B 1 24 LYS 24 24 24 LYS LYS B . n B 1 25 LYS 25 25 25 LYS LYS B . n B 1 26 LEU 26 26 26 LEU LEU B . n B 1 27 LEU 27 27 27 LEU LEU B . n B 1 28 GLY 28 28 28 GLY GLY B . n B 1 29 VAL 29 29 29 VAL VAL B . n B 1 30 THR 30 30 30 THR THR B . n B 1 31 ILE 31 31 31 ILE ILE B . n B 1 32 TYR 32 32 32 TYR TYR B . n B 1 33 SER 33 33 33 SER SER B . n B 1 34 SER 34 34 34 SER SER B . n B 1 35 ASP 35 35 35 ASP ASP B . n B 1 36 ALA 36 36 36 ALA ALA B . n B 1 37 ILE 37 37 37 ILE ILE B . n B 1 38 ARG 38 38 38 ARG ARG B . n B 1 39 SER 39 39 39 SER SER B . n B 1 40 ILE 40 40 40 ILE ILE B . n B 1 41 ALA 41 41 41 ALA ALA B . n B 1 42 PHE 42 42 42 PHE PHE B . n B 1 43 ASN 43 43 43 ASN ASN B . n B 1 44 TYR 44 44 44 TYR TYR B . n B 1 45 ILE 45 45 45 ILE ILE B . n B 1 46 GLY 46 46 46 GLY GLY B . n B 1 47 VAL 47 47 47 VAL VAL B . n B 1 48 ASP 48 48 48 ASP ASP B . n B 1 49 GLY 49 49 49 GLY GLY B . n B 1 50 GLN 50 50 50 GLN GLN B . n B 1 51 GLU 51 51 51 GLU GLU B . n B 1 52 TYR 52 52 52 TYR TYR B . n B 1 53 ALA 53 53 53 ALA ALA B . n B 1 54 ILE 54 54 54 ILE ILE B . n B 1 55 GLY 55 55 55 GLY GLY B . n B 1 56 PRO 56 56 56 PRO PRO B . n B 1 57 TRP 57 57 57 TRP TRP B . n B 1 58 GLY 58 58 58 GLY GLY B . n B 1 59 GLY 59 59 59 GLY GLY B . n B 1 60 GLY 60 60 60 GLY GLY B . n B 1 61 GLU 61 61 61 GLU GLU B . n B 1 62 SER 62 62 62 SER SER B . n B 1 63 THR 63 63 63 THR THR B . n B 1 64 SER 64 64 64 SER SER B . n B 1 65 THR 65 65 65 THR THR B . n B 1 66 GLU 66 66 66 GLU GLU B . n B 1 67 ILE 67 67 67 ILE ILE B . n B 1 68 LYS 68 68 68 LYS LYS B . n B 1 69 LEU 69 69 69 LEU LEU B . n B 1 70 GLY 70 70 70 GLY GLY B . n B 1 71 SER 71 71 71 SER SER B . n B 1 72 SER 72 72 72 SER SER B . n B 1 73 GLU 73 73 73 GLU GLU B . n B 1 74 GLN 74 74 74 GLN GLN B . n B 1 75 ILE 75 75 75 ILE ILE B . n B 1 76 LYS 76 76 76 LYS LYS B . n B 1 77 GLU 77 77 77 GLU GLU B . n B 1 78 ILE 78 78 78 ILE ILE B . n B 1 79 SER 79 79 79 SER SER B . n B 1 80 GLY 80 80 80 GLY GLY B . n B 1 81 THR 81 81 81 THR THR B . n B 1 82 HIS 82 82 82 HIS HIS B . n B 1 83 GLY 83 83 83 GLY GLY B . n B 1 84 PRO 84 84 84 PRO PRO B . n B 1 85 VAL 85 85 85 VAL VAL B . n B 1 86 TYR 86 86 86 TYR TYR B . n B 1 87 ASP 87 87 87 ASP ASP B . n B 1 88 LEU 88 88 88 LEU LEU B . n B 1 89 ALA 89 89 89 ALA ALA B . n B 1 90 ASP 90 90 90 ASP ASP B . n B 1 91 ILE 91 91 91 ILE ILE B . n B 1 92 VAL 92 92 92 VAL VAL B . n B 1 93 THR 93 93 93 THR THR B . n B 1 94 TYR 94 94 94 TYR TYR B . n B 1 95 LEU 95 95 95 LEU LEU B . n B 1 96 LYS 96 96 96 LYS LYS B . n B 1 97 ILE 97 97 97 ILE ILE B . n B 1 98 VAL 98 98 98 VAL VAL B . n B 1 99 THR 99 99 99 THR THR B . n B 1 100 SER 100 100 100 SER SER B . n B 1 101 ALA 101 101 101 ALA ALA B . n B 1 102 ASN 102 102 102 ASN ASN B . n B 1 103 ASN 103 103 103 ASN ASN B . n B 1 104 THR 104 104 104 THR THR B . n B 1 105 TYR 105 105 105 TYR TYR B . n B 1 106 GLU 106 106 106 GLU GLU B . n B 1 107 ALA 107 107 107 ALA ALA B . n B 1 108 GLY 108 108 108 GLY GLY B . n B 1 109 VAL 109 109 109 VAL VAL B . n B 1 110 PRO 110 110 110 PRO PRO B . n B 1 111 ASN 111 111 111 ASN ASN B . n B 1 112 GLY 112 112 112 GLY GLY B . n B 1 113 LYS 113 113 113 LYS LYS B . n B 1 114 GLU 114 114 114 GLU GLU B . n B 1 115 PHE 115 115 115 PHE PHE B . n B 1 116 SER 116 116 116 SER SER B . n B 1 117 ILE 117 117 117 ILE ILE B . n B 1 118 PRO 118 118 118 PRO PRO B . n B 1 119 LEU 119 119 119 LEU LEU B . n B 1 120 GLN 120 120 120 GLN GLN B . n B 1 121 ASP 121 121 121 ASP ASP B . n B 1 122 SER 122 122 122 SER SER B . n B 1 123 GLY 123 123 123 GLY GLY B . n B 1 124 HIS 124 124 124 HIS HIS B . n B 1 125 VAL 125 125 125 VAL VAL B . n B 1 126 VAL 126 126 126 VAL VAL B . n B 1 127 GLY 127 127 127 GLY GLY B . n B 1 128 PHE 128 128 128 PHE PHE B . n B 1 129 PHE 129 129 129 PHE PHE B . n B 1 130 GLY 130 130 130 GLY GLY B . n B 1 131 ARG 131 131 131 ARG ARG B . n B 1 132 SER 132 132 132 SER SER B . n B 1 133 GLY 133 133 133 GLY GLY B . n B 1 134 THR 134 134 134 THR THR B . n B 1 135 LEU 135 135 135 LEU LEU B . n B 1 136 ILE 136 136 136 ILE ILE B . n B 1 137 ASP 137 137 137 ASP ASP B . n B 1 138 ALA 138 138 138 ALA ALA B . n B 1 139 ILE 139 139 139 ILE ILE B . n B 1 140 GLY 140 140 140 GLY GLY B . n B 1 141 ILE 141 141 141 ILE ILE B . n B 1 142 TYR 142 142 142 TYR TYR B . n B 1 143 VAL 143 143 143 VAL VAL B . n B 1 144 HIS 144 144 144 HIS HIS B . n B 1 145 PRO 145 145 145 PRO PRO B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 HOH 1 1101 156 HOH HOH A . D 3 HOH 2 1102 30 HOH HOH A . D 3 HOH 3 1103 38 HOH HOH A . D 3 HOH 4 1104 37 HOH HOH A . D 3 HOH 5 1105 28 HOH HOH A . D 3 HOH 6 1106 6 HOH HOH A . D 3 HOH 7 1107 110 HOH HOH A . D 3 HOH 8 1108 71 HOH HOH A . D 3 HOH 9 1109 24 HOH HOH A . D 3 HOH 10 1110 82 HOH HOH A . D 3 HOH 11 1111 35 HOH HOH A . D 3 HOH 12 1112 97 HOH HOH A . D 3 HOH 13 1113 32 HOH HOH A . D 3 HOH 14 1114 13 HOH HOH A . D 3 HOH 15 1115 86 HOH HOH A . D 3 HOH 16 1116 69 HOH HOH A . D 3 HOH 17 1117 4 HOH HOH A . D 3 HOH 18 1118 98 HOH HOH A . D 3 HOH 19 1119 29 HOH HOH A . D 3 HOH 20 1120 36 HOH HOH A . D 3 HOH 21 1121 47 HOH HOH A . D 3 HOH 22 1122 2 HOH HOH A . D 3 HOH 23 1123 21 HOH HOH A . D 3 HOH 24 1124 18 HOH HOH A . D 3 HOH 25 1125 144 HOH HOH A . D 3 HOH 26 1126 39 HOH HOH A . D 3 HOH 27 1127 149 HOH HOH A . D 3 HOH 28 1128 126 HOH HOH A . D 3 HOH 29 1129 20 HOH HOH A . D 3 HOH 30 1130 22 HOH HOH A . D 3 HOH 31 1131 25 HOH HOH A . D 3 HOH 32 1132 40 HOH HOH A . D 3 HOH 33 1133 31 HOH HOH A . D 3 HOH 34 1134 17 HOH HOH A . D 3 HOH 35 1135 3 HOH HOH A . D 3 HOH 36 1136 113 HOH HOH A . D 3 HOH 37 1137 77 HOH HOH A . D 3 HOH 38 1138 129 HOH HOH A . D 3 HOH 39 1139 12 HOH HOH A . D 3 HOH 40 1140 72 HOH HOH A . D 3 HOH 41 1141 146 HOH HOH A . D 3 HOH 42 1142 117 HOH HOH A . D 3 HOH 43 1143 116 HOH HOH A . D 3 HOH 44 1144 59 HOH HOH A . D 3 HOH 45 1145 125 HOH HOH A . D 3 HOH 46 1146 105 HOH HOH A . D 3 HOH 47 1147 142 HOH HOH A . D 3 HOH 48 1148 118 HOH HOH A . D 3 HOH 49 1149 103 HOH HOH A . D 3 HOH 50 1150 91 HOH HOH A . D 3 HOH 51 1151 147 HOH HOH A . D 3 HOH 52 1152 93 HOH HOH A . D 3 HOH 53 1153 55 HOH HOH A . D 3 HOH 54 1154 79 HOH HOH A . D 3 HOH 55 1155 80 HOH HOH A . D 3 HOH 56 1156 26 HOH HOH A . D 3 HOH 57 1157 8 HOH HOH A . D 3 HOH 58 1158 11 HOH HOH A . D 3 HOH 59 1159 128 HOH HOH A . D 3 HOH 60 1160 115 HOH HOH A . D 3 HOH 61 1161 102 HOH HOH A . D 3 HOH 62 1162 85 HOH HOH A . D 3 HOH 63 1163 51 HOH HOH A . D 3 HOH 64 1164 14 HOH HOH A . D 3 HOH 65 1165 119 HOH HOH A . D 3 HOH 66 1166 42 HOH HOH A . D 3 HOH 67 1167 44 HOH HOH A . D 3 HOH 68 1168 92 HOH HOH A . D 3 HOH 69 1169 123 HOH HOH A . D 3 HOH 70 1170 148 HOH HOH A . D 3 HOH 71 1171 84 HOH HOH A . D 3 HOH 72 1172 140 HOH HOH A . D 3 HOH 73 1173 130 HOH HOH A . D 3 HOH 74 1174 95 HOH HOH A . D 3 HOH 75 1175 154 HOH HOH A . D 3 HOH 76 1176 70 HOH HOH A . D 3 HOH 77 1177 151 HOH HOH A . D 3 HOH 78 1178 145 HOH HOH A . D 3 HOH 79 1179 68 HOH HOH A . D 3 HOH 80 1180 143 HOH HOH A . D 3 HOH 81 1181 139 HOH HOH A . D 3 HOH 82 1182 141 HOH HOH A . E 3 HOH 1 201 153 HOH HOH B . E 3 HOH 2 202 61 HOH HOH B . E 3 HOH 3 203 54 HOH HOH B . E 3 HOH 4 204 124 HOH HOH B . E 3 HOH 5 205 120 HOH HOH B . E 3 HOH 6 206 65 HOH HOH B . E 3 HOH 7 207 112 HOH HOH B . E 3 HOH 8 208 101 HOH HOH B . E 3 HOH 9 209 66 HOH HOH B . E 3 HOH 10 210 108 HOH HOH B . E 3 HOH 11 211 41 HOH HOH B . E 3 HOH 12 212 94 HOH HOH B . E 3 HOH 13 213 50 HOH HOH B . E 3 HOH 14 214 107 HOH HOH B . E 3 HOH 15 215 7 HOH HOH B . E 3 HOH 16 216 67 HOH HOH B . E 3 HOH 17 217 27 HOH HOH B . E 3 HOH 18 218 106 HOH HOH B . E 3 HOH 19 219 99 HOH HOH B . E 3 HOH 20 220 19 HOH HOH B . E 3 HOH 21 221 88 HOH HOH B . E 3 HOH 22 222 9 HOH HOH B . E 3 HOH 23 223 63 HOH HOH B . E 3 HOH 24 224 138 HOH HOH B . E 3 HOH 25 225 43 HOH HOH B . E 3 HOH 26 226 10 HOH HOH B . E 3 HOH 27 227 15 HOH HOH B . E 3 HOH 28 228 5 HOH HOH B . E 3 HOH 29 229 81 HOH HOH B . E 3 HOH 30 230 96 HOH HOH B . E 3 HOH 31 231 1 HOH HOH B . E 3 HOH 32 232 131 HOH HOH B . E 3 HOH 33 233 74 HOH HOH B . E 3 HOH 34 234 16 HOH HOH B . E 3 HOH 35 235 53 HOH HOH B . E 3 HOH 36 236 49 HOH HOH B . E 3 HOH 37 237 111 HOH HOH B . E 3 HOH 38 238 73 HOH HOH B . E 3 HOH 39 239 57 HOH HOH B . E 3 HOH 40 240 34 HOH HOH B . E 3 HOH 41 241 23 HOH HOH B . E 3 HOH 42 242 46 HOH HOH B . E 3 HOH 43 243 33 HOH HOH B . E 3 HOH 44 244 75 HOH HOH B . E 3 HOH 45 245 90 HOH HOH B . E 3 HOH 46 246 104 HOH HOH B . E 3 HOH 47 247 136 HOH HOH B . E 3 HOH 48 248 132 HOH HOH B . E 3 HOH 49 249 135 HOH HOH B . E 3 HOH 50 250 122 HOH HOH B . E 3 HOH 51 251 62 HOH HOH B . E 3 HOH 52 252 100 HOH HOH B . E 3 HOH 53 253 52 HOH HOH B . E 3 HOH 54 254 109 HOH HOH B . E 3 HOH 55 255 60 HOH HOH B . E 3 HOH 56 256 137 HOH HOH B . E 3 HOH 57 257 121 HOH HOH B . E 3 HOH 58 258 133 HOH HOH B . E 3 HOH 59 259 87 HOH HOH B . E 3 HOH 60 260 76 HOH HOH B . E 3 HOH 61 261 83 HOH HOH B . E 3 HOH 62 262 56 HOH HOH B . E 3 HOH 63 263 114 HOH HOH B . E 3 HOH 64 264 78 HOH HOH B . E 3 HOH 65 265 45 HOH HOH B . E 3 HOH 66 266 58 HOH HOH B . E 3 HOH 67 267 150 HOH HOH B . E 3 HOH 68 268 155 HOH HOH B . E 3 HOH 69 269 127 HOH HOH B . E 3 HOH 70 270 152 HOH HOH B . E 3 HOH 71 271 89 HOH HOH B . E 3 HOH 72 272 64 HOH HOH B . E 3 HOH 73 273 48 HOH HOH B . E 3 HOH 74 274 134 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2660 ? 1 MORE 22 ? 1 'SSA (A^2)' 13020 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-10-18 2 'Structure model' 1 1 2017-12-06 3 'Structure model' 2 0 2020-07-29 4 'Structure model' 2 1 2023-11-22 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Structure summary' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Derived calculations' 9 4 'Structure model' 'Refinement description' 10 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' atom_site 3 3 'Structure model' chem_comp 4 3 'Structure model' entity 5 3 'Structure model' pdbx_branch_scheme 6 3 'Structure model' pdbx_chem_comp_identifier 7 3 'Structure model' pdbx_entity_branch 8 3 'Structure model' pdbx_entity_branch_descriptor 9 3 'Structure model' pdbx_entity_branch_link 10 3 'Structure model' pdbx_entity_branch_list 11 3 'Structure model' pdbx_entity_nonpoly 12 3 'Structure model' pdbx_nonpoly_scheme 13 3 'Structure model' pdbx_struct_assembly_gen 14 3 'Structure model' struct_asym 15 3 'Structure model' struct_conn 16 3 'Structure model' struct_site 17 3 'Structure model' struct_site_gen 18 4 'Structure model' chem_comp 19 4 'Structure model' chem_comp_atom 20 4 'Structure model' chem_comp_bond 21 4 'Structure model' database_2 22 4 'Structure model' pdbx_initial_refinement_model 23 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_atom_site.B_iso_or_equiv' 5 3 'Structure model' '_atom_site.Cartn_x' 6 3 'Structure model' '_atom_site.Cartn_y' 7 3 'Structure model' '_atom_site.Cartn_z' 8 3 'Structure model' '_atom_site.auth_asym_id' 9 3 'Structure model' '_atom_site.auth_atom_id' 10 3 'Structure model' '_atom_site.auth_comp_id' 11 3 'Structure model' '_atom_site.auth_seq_id' 12 3 'Structure model' '_atom_site.label_asym_id' 13 3 'Structure model' '_atom_site.label_atom_id' 14 3 'Structure model' '_atom_site.label_comp_id' 15 3 'Structure model' '_atom_site.label_entity_id' 16 3 'Structure model' '_atom_site.type_symbol' 17 3 'Structure model' '_chem_comp.name' 18 3 'Structure model' '_chem_comp.type' 19 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 20 3 'Structure model' '_struct_conn.pdbx_dist_value' 21 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 22 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 29 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 30 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 32 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 33 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 34 4 'Structure model' '_chem_comp.pdbx_synonyms' 35 4 'Structure model' '_database_2.pdbx_DOI' 36 4 'Structure model' '_database_2.pdbx_database_accession' 37 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.10.1_2155)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 4 # _pdbx_entry_details.compound_details ? _pdbx_entry_details.entry_id 5XFH _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'The experimental info of UNIPROT (Q0JMY8, SALT_ORYSJ) shows conflict at this position in AAB53810 (Ref. 2).' _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OG _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 SER _pdbx_validate_close_contact.auth_seq_id_1 34 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 201 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 34 ? ? -136.11 -116.71 2 1 TYR A 86 ? B 40.49 -91.99 3 1 ASP A 87 ? ? -144.73 18.64 4 1 ASN A 111 ? ? -167.75 106.16 5 1 ASP A 121 ? ? 59.86 -133.34 6 1 SER B 34 ? ? -127.07 -100.54 7 1 TYR B 86 ? ? 48.72 -127.92 8 1 ASN B 111 ? ? -170.28 99.13 9 1 ASP B 121 ? ? 51.24 -135.03 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 VAL A 85 ? ? TYR A 86 ? B -150.00 2 1 GLY B 55 ? ? PRO B 56 ? ? 67.59 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id GLY _pdbx_validate_main_chain_plane.auth_asym_id B _pdbx_validate_main_chain_plane.auth_seq_id 55 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle 11.36 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A GLY 60 ? A GLY 60 3 1 Y 1 A GLU 61 ? A GLU 61 4 1 Y 1 A GLY 70 ? A GLY 70 5 1 Y 1 B MET 1 ? B MET 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BMA C1 C N R 74 BMA C2 C N S 75 BMA C3 C N S 76 BMA C4 C N S 77 BMA C5 C N R 78 BMA C6 C N N 79 BMA O1 O N N 80 BMA O2 O N N 81 BMA O3 O N N 82 BMA O4 O N N 83 BMA O5 O N N 84 BMA O6 O N N 85 BMA H1 H N N 86 BMA H2 H N N 87 BMA H3 H N N 88 BMA H4 H N N 89 BMA H5 H N N 90 BMA H61 H N N 91 BMA H62 H N N 92 BMA HO1 H N N 93 BMA HO2 H N N 94 BMA HO3 H N N 95 BMA HO4 H N N 96 BMA HO6 H N N 97 GAL C1 C N R 98 GAL C2 C N R 99 GAL C3 C N S 100 GAL C4 C N R 101 GAL C5 C N R 102 GAL C6 C N N 103 GAL O1 O N N 104 GAL O2 O N N 105 GAL O3 O N N 106 GAL O4 O N N 107 GAL O5 O N N 108 GAL O6 O N N 109 GAL H1 H N N 110 GAL H2 H N N 111 GAL H3 H N N 112 GAL H4 H N N 113 GAL H5 H N N 114 GAL H61 H N N 115 GAL H62 H N N 116 GAL HO1 H N N 117 GAL HO2 H N N 118 GAL HO3 H N N 119 GAL HO4 H N N 120 GAL HO6 H N N 121 GLN N N N N 122 GLN CA C N S 123 GLN C C N N 124 GLN O O N N 125 GLN CB C N N 126 GLN CG C N N 127 GLN CD C N N 128 GLN OE1 O N N 129 GLN NE2 N N N 130 GLN OXT O N N 131 GLN H H N N 132 GLN H2 H N N 133 GLN HA H N N 134 GLN HB2 H N N 135 GLN HB3 H N N 136 GLN HG2 H N N 137 GLN HG3 H N N 138 GLN HE21 H N N 139 GLN HE22 H N N 140 GLN HXT H N N 141 GLU N N N N 142 GLU CA C N S 143 GLU C C N N 144 GLU O O N N 145 GLU CB C N N 146 GLU CG C N N 147 GLU CD C N N 148 GLU OE1 O N N 149 GLU OE2 O N N 150 GLU OXT O N N 151 GLU H H N N 152 GLU H2 H N N 153 GLU HA H N N 154 GLU HB2 H N N 155 GLU HB3 H N N 156 GLU HG2 H N N 157 GLU HG3 H N N 158 GLU HE2 H N N 159 GLU HXT H N N 160 GLY N N N N 161 GLY CA C N N 162 GLY C C N N 163 GLY O O N N 164 GLY OXT O N N 165 GLY H H N N 166 GLY H2 H N N 167 GLY HA2 H N N 168 GLY HA3 H N N 169 GLY HXT H N N 170 HIS N N N N 171 HIS CA C N S 172 HIS C C N N 173 HIS O O N N 174 HIS CB C N N 175 HIS CG C Y N 176 HIS ND1 N Y N 177 HIS CD2 C Y N 178 HIS CE1 C Y N 179 HIS NE2 N Y N 180 HIS OXT O N N 181 HIS H H N N 182 HIS H2 H N N 183 HIS HA H N N 184 HIS HB2 H N N 185 HIS HB3 H N N 186 HIS HD1 H N N 187 HIS HD2 H N N 188 HIS HE1 H N N 189 HIS HE2 H N N 190 HIS HXT H N N 191 HOH O O N N 192 HOH H1 H N N 193 HOH H2 H N N 194 ILE N N N N 195 ILE CA C N S 196 ILE C C N N 197 ILE O O N N 198 ILE CB C N S 199 ILE CG1 C N N 200 ILE CG2 C N N 201 ILE CD1 C N N 202 ILE OXT O N N 203 ILE H H N N 204 ILE H2 H N N 205 ILE HA H N N 206 ILE HB H N N 207 ILE HG12 H N N 208 ILE HG13 H N N 209 ILE HG21 H N N 210 ILE HG22 H N N 211 ILE HG23 H N N 212 ILE HD11 H N N 213 ILE HD12 H N N 214 ILE HD13 H N N 215 ILE HXT H N N 216 LEU N N N N 217 LEU CA C N S 218 LEU C C N N 219 LEU O O N N 220 LEU CB C N N 221 LEU CG C N N 222 LEU CD1 C N N 223 LEU CD2 C N N 224 LEU OXT O N N 225 LEU H H N N 226 LEU H2 H N N 227 LEU HA H N N 228 LEU HB2 H N N 229 LEU HB3 H N N 230 LEU HG H N N 231 LEU HD11 H N N 232 LEU HD12 H N N 233 LEU HD13 H N N 234 LEU HD21 H N N 235 LEU HD22 H N N 236 LEU HD23 H N N 237 LEU HXT H N N 238 LYS N N N N 239 LYS CA C N S 240 LYS C C N N 241 LYS O O N N 242 LYS CB C N N 243 LYS CG C N N 244 LYS CD C N N 245 LYS CE C N N 246 LYS NZ N N N 247 LYS OXT O N N 248 LYS H H N N 249 LYS H2 H N N 250 LYS HA H N N 251 LYS HB2 H N N 252 LYS HB3 H N N 253 LYS HG2 H N N 254 LYS HG3 H N N 255 LYS HD2 H N N 256 LYS HD3 H N N 257 LYS HE2 H N N 258 LYS HE3 H N N 259 LYS HZ1 H N N 260 LYS HZ2 H N N 261 LYS HZ3 H N N 262 LYS HXT H N N 263 MAN C1 C N S 264 MAN C2 C N S 265 MAN C3 C N S 266 MAN C4 C N S 267 MAN C5 C N R 268 MAN C6 C N N 269 MAN O1 O N N 270 MAN O2 O N N 271 MAN O3 O N N 272 MAN O4 O N N 273 MAN O5 O N N 274 MAN O6 O N N 275 MAN H1 H N N 276 MAN H2 H N N 277 MAN H3 H N N 278 MAN H4 H N N 279 MAN H5 H N N 280 MAN H61 H N N 281 MAN H62 H N N 282 MAN HO1 H N N 283 MAN HO2 H N N 284 MAN HO3 H N N 285 MAN HO4 H N N 286 MAN HO6 H N N 287 MET N N N N 288 MET CA C N S 289 MET C C N N 290 MET O O N N 291 MET CB C N N 292 MET CG C N N 293 MET SD S N N 294 MET CE C N N 295 MET OXT O N N 296 MET H H N N 297 MET H2 H N N 298 MET HA H N N 299 MET HB2 H N N 300 MET HB3 H N N 301 MET HG2 H N N 302 MET HG3 H N N 303 MET HE1 H N N 304 MET HE2 H N N 305 MET HE3 H N N 306 MET HXT H N N 307 NAG C1 C N R 308 NAG C2 C N R 309 NAG C3 C N R 310 NAG C4 C N S 311 NAG C5 C N R 312 NAG C6 C N N 313 NAG C7 C N N 314 NAG C8 C N N 315 NAG N2 N N N 316 NAG O1 O N N 317 NAG O3 O N N 318 NAG O4 O N N 319 NAG O5 O N N 320 NAG O6 O N N 321 NAG O7 O N N 322 NAG H1 H N N 323 NAG H2 H N N 324 NAG H3 H N N 325 NAG H4 H N N 326 NAG H5 H N N 327 NAG H61 H N N 328 NAG H62 H N N 329 NAG H81 H N N 330 NAG H82 H N N 331 NAG H83 H N N 332 NAG HN2 H N N 333 NAG HO1 H N N 334 NAG HO3 H N N 335 NAG HO4 H N N 336 NAG HO6 H N N 337 PHE N N N N 338 PHE CA C N S 339 PHE C C N N 340 PHE O O N N 341 PHE CB C N N 342 PHE CG C Y N 343 PHE CD1 C Y N 344 PHE CD2 C Y N 345 PHE CE1 C Y N 346 PHE CE2 C Y N 347 PHE CZ C Y N 348 PHE OXT O N N 349 PHE H H N N 350 PHE H2 H N N 351 PHE HA H N N 352 PHE HB2 H N N 353 PHE HB3 H N N 354 PHE HD1 H N N 355 PHE HD2 H N N 356 PHE HE1 H N N 357 PHE HE2 H N N 358 PHE HZ H N N 359 PHE HXT H N N 360 PRO N N N N 361 PRO CA C N S 362 PRO C C N N 363 PRO O O N N 364 PRO CB C N N 365 PRO CG C N N 366 PRO CD C N N 367 PRO OXT O N N 368 PRO H H N N 369 PRO HA H N N 370 PRO HB2 H N N 371 PRO HB3 H N N 372 PRO HG2 H N N 373 PRO HG3 H N N 374 PRO HD2 H N N 375 PRO HD3 H N N 376 PRO HXT H N N 377 SER N N N N 378 SER CA C N S 379 SER C C N N 380 SER O O N N 381 SER CB C N N 382 SER OG O N N 383 SER OXT O N N 384 SER H H N N 385 SER H2 H N N 386 SER HA H N N 387 SER HB2 H N N 388 SER HB3 H N N 389 SER HG H N N 390 SER HXT H N N 391 THR N N N N 392 THR CA C N S 393 THR C C N N 394 THR O O N N 395 THR CB C N R 396 THR OG1 O N N 397 THR CG2 C N N 398 THR OXT O N N 399 THR H H N N 400 THR H2 H N N 401 THR HA H N N 402 THR HB H N N 403 THR HG1 H N N 404 THR HG21 H N N 405 THR HG22 H N N 406 THR HG23 H N N 407 THR HXT H N N 408 TRP N N N N 409 TRP CA C N S 410 TRP C C N N 411 TRP O O N N 412 TRP CB C N N 413 TRP CG C Y N 414 TRP CD1 C Y N 415 TRP CD2 C Y N 416 TRP NE1 N Y N 417 TRP CE2 C Y N 418 TRP CE3 C Y N 419 TRP CZ2 C Y N 420 TRP CZ3 C Y N 421 TRP CH2 C Y N 422 TRP OXT O N N 423 TRP H H N N 424 TRP H2 H N N 425 TRP HA H N N 426 TRP HB2 H N N 427 TRP HB3 H N N 428 TRP HD1 H N N 429 TRP HE1 H N N 430 TRP HE3 H N N 431 TRP HZ2 H N N 432 TRP HZ3 H N N 433 TRP HH2 H N N 434 TRP HXT H N N 435 TYR N N N N 436 TYR CA C N S 437 TYR C C N N 438 TYR O O N N 439 TYR CB C N N 440 TYR CG C Y N 441 TYR CD1 C Y N 442 TYR CD2 C Y N 443 TYR CE1 C Y N 444 TYR CE2 C Y N 445 TYR CZ C Y N 446 TYR OH O N N 447 TYR OXT O N N 448 TYR H H N N 449 TYR H2 H N N 450 TYR HA H N N 451 TYR HB2 H N N 452 TYR HB3 H N N 453 TYR HD1 H N N 454 TYR HD2 H N N 455 TYR HE1 H N N 456 TYR HE2 H N N 457 TYR HH H N N 458 TYR HXT H N N 459 VAL N N N N 460 VAL CA C N S 461 VAL C C N N 462 VAL O O N N 463 VAL CB C N N 464 VAL CG1 C N N 465 VAL CG2 C N N 466 VAL OXT O N N 467 VAL H H N N 468 VAL H2 H N N 469 VAL HA H N N 470 VAL HB H N N 471 VAL HG11 H N N 472 VAL HG12 H N N 473 VAL HG13 H N N 474 VAL HG21 H N N 475 VAL HG22 H N N 476 VAL HG23 H N N 477 VAL HXT H N N 478 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BMA C1 C2 sing N N 70 BMA C1 O1 sing N N 71 BMA C1 O5 sing N N 72 BMA C1 H1 sing N N 73 BMA C2 C3 sing N N 74 BMA C2 O2 sing N N 75 BMA C2 H2 sing N N 76 BMA C3 C4 sing N N 77 BMA C3 O3 sing N N 78 BMA C3 H3 sing N N 79 BMA C4 C5 sing N N 80 BMA C4 O4 sing N N 81 BMA C4 H4 sing N N 82 BMA C5 C6 sing N N 83 BMA C5 O5 sing N N 84 BMA C5 H5 sing N N 85 BMA C6 O6 sing N N 86 BMA C6 H61 sing N N 87 BMA C6 H62 sing N N 88 BMA O1 HO1 sing N N 89 BMA O2 HO2 sing N N 90 BMA O3 HO3 sing N N 91 BMA O4 HO4 sing N N 92 BMA O6 HO6 sing N N 93 GAL C1 C2 sing N N 94 GAL C1 O1 sing N N 95 GAL C1 O5 sing N N 96 GAL C1 H1 sing N N 97 GAL C2 C3 sing N N 98 GAL C2 O2 sing N N 99 GAL C2 H2 sing N N 100 GAL C3 C4 sing N N 101 GAL C3 O3 sing N N 102 GAL C3 H3 sing N N 103 GAL C4 C5 sing N N 104 GAL C4 O4 sing N N 105 GAL C4 H4 sing N N 106 GAL C5 C6 sing N N 107 GAL C5 O5 sing N N 108 GAL C5 H5 sing N N 109 GAL C6 O6 sing N N 110 GAL C6 H61 sing N N 111 GAL C6 H62 sing N N 112 GAL O1 HO1 sing N N 113 GAL O2 HO2 sing N N 114 GAL O3 HO3 sing N N 115 GAL O4 HO4 sing N N 116 GAL O6 HO6 sing N N 117 GLN N CA sing N N 118 GLN N H sing N N 119 GLN N H2 sing N N 120 GLN CA C sing N N 121 GLN CA CB sing N N 122 GLN CA HA sing N N 123 GLN C O doub N N 124 GLN C OXT sing N N 125 GLN CB CG sing N N 126 GLN CB HB2 sing N N 127 GLN CB HB3 sing N N 128 GLN CG CD sing N N 129 GLN CG HG2 sing N N 130 GLN CG HG3 sing N N 131 GLN CD OE1 doub N N 132 GLN CD NE2 sing N N 133 GLN NE2 HE21 sing N N 134 GLN NE2 HE22 sing N N 135 GLN OXT HXT sing N N 136 GLU N CA sing N N 137 GLU N H sing N N 138 GLU N H2 sing N N 139 GLU CA C sing N N 140 GLU CA CB sing N N 141 GLU CA HA sing N N 142 GLU C O doub N N 143 GLU C OXT sing N N 144 GLU CB CG sing N N 145 GLU CB HB2 sing N N 146 GLU CB HB3 sing N N 147 GLU CG CD sing N N 148 GLU CG HG2 sing N N 149 GLU CG HG3 sing N N 150 GLU CD OE1 doub N N 151 GLU CD OE2 sing N N 152 GLU OE2 HE2 sing N N 153 GLU OXT HXT sing N N 154 GLY N CA sing N N 155 GLY N H sing N N 156 GLY N H2 sing N N 157 GLY CA C sing N N 158 GLY CA HA2 sing N N 159 GLY CA HA3 sing N N 160 GLY C O doub N N 161 GLY C OXT sing N N 162 GLY OXT HXT sing N N 163 HIS N CA sing N N 164 HIS N H sing N N 165 HIS N H2 sing N N 166 HIS CA C sing N N 167 HIS CA CB sing N N 168 HIS CA HA sing N N 169 HIS C O doub N N 170 HIS C OXT sing N N 171 HIS CB CG sing N N 172 HIS CB HB2 sing N N 173 HIS CB HB3 sing N N 174 HIS CG ND1 sing Y N 175 HIS CG CD2 doub Y N 176 HIS ND1 CE1 doub Y N 177 HIS ND1 HD1 sing N N 178 HIS CD2 NE2 sing Y N 179 HIS CD2 HD2 sing N N 180 HIS CE1 NE2 sing Y N 181 HIS CE1 HE1 sing N N 182 HIS NE2 HE2 sing N N 183 HIS OXT HXT sing N N 184 HOH O H1 sing N N 185 HOH O H2 sing N N 186 ILE N CA sing N N 187 ILE N H sing N N 188 ILE N H2 sing N N 189 ILE CA C sing N N 190 ILE CA CB sing N N 191 ILE CA HA sing N N 192 ILE C O doub N N 193 ILE C OXT sing N N 194 ILE CB CG1 sing N N 195 ILE CB CG2 sing N N 196 ILE CB HB sing N N 197 ILE CG1 CD1 sing N N 198 ILE CG1 HG12 sing N N 199 ILE CG1 HG13 sing N N 200 ILE CG2 HG21 sing N N 201 ILE CG2 HG22 sing N N 202 ILE CG2 HG23 sing N N 203 ILE CD1 HD11 sing N N 204 ILE CD1 HD12 sing N N 205 ILE CD1 HD13 sing N N 206 ILE OXT HXT sing N N 207 LEU N CA sing N N 208 LEU N H sing N N 209 LEU N H2 sing N N 210 LEU CA C sing N N 211 LEU CA CB sing N N 212 LEU CA HA sing N N 213 LEU C O doub N N 214 LEU C OXT sing N N 215 LEU CB CG sing N N 216 LEU CB HB2 sing N N 217 LEU CB HB3 sing N N 218 LEU CG CD1 sing N N 219 LEU CG CD2 sing N N 220 LEU CG HG sing N N 221 LEU CD1 HD11 sing N N 222 LEU CD1 HD12 sing N N 223 LEU CD1 HD13 sing N N 224 LEU CD2 HD21 sing N N 225 LEU CD2 HD22 sing N N 226 LEU CD2 HD23 sing N N 227 LEU OXT HXT sing N N 228 LYS N CA sing N N 229 LYS N H sing N N 230 LYS N H2 sing N N 231 LYS CA C sing N N 232 LYS CA CB sing N N 233 LYS CA HA sing N N 234 LYS C O doub N N 235 LYS C OXT sing N N 236 LYS CB CG sing N N 237 LYS CB HB2 sing N N 238 LYS CB HB3 sing N N 239 LYS CG CD sing N N 240 LYS CG HG2 sing N N 241 LYS CG HG3 sing N N 242 LYS CD CE sing N N 243 LYS CD HD2 sing N N 244 LYS CD HD3 sing N N 245 LYS CE NZ sing N N 246 LYS CE HE2 sing N N 247 LYS CE HE3 sing N N 248 LYS NZ HZ1 sing N N 249 LYS NZ HZ2 sing N N 250 LYS NZ HZ3 sing N N 251 LYS OXT HXT sing N N 252 MAN C1 C2 sing N N 253 MAN C1 O1 sing N N 254 MAN C1 O5 sing N N 255 MAN C1 H1 sing N N 256 MAN C2 C3 sing N N 257 MAN C2 O2 sing N N 258 MAN C2 H2 sing N N 259 MAN C3 C4 sing N N 260 MAN C3 O3 sing N N 261 MAN C3 H3 sing N N 262 MAN C4 C5 sing N N 263 MAN C4 O4 sing N N 264 MAN C4 H4 sing N N 265 MAN C5 C6 sing N N 266 MAN C5 O5 sing N N 267 MAN C5 H5 sing N N 268 MAN C6 O6 sing N N 269 MAN C6 H61 sing N N 270 MAN C6 H62 sing N N 271 MAN O1 HO1 sing N N 272 MAN O2 HO2 sing N N 273 MAN O3 HO3 sing N N 274 MAN O4 HO4 sing N N 275 MAN O6 HO6 sing N N 276 MET N CA sing N N 277 MET N H sing N N 278 MET N H2 sing N N 279 MET CA C sing N N 280 MET CA CB sing N N 281 MET CA HA sing N N 282 MET C O doub N N 283 MET C OXT sing N N 284 MET CB CG sing N N 285 MET CB HB2 sing N N 286 MET CB HB3 sing N N 287 MET CG SD sing N N 288 MET CG HG2 sing N N 289 MET CG HG3 sing N N 290 MET SD CE sing N N 291 MET CE HE1 sing N N 292 MET CE HE2 sing N N 293 MET CE HE3 sing N N 294 MET OXT HXT sing N N 295 NAG C1 C2 sing N N 296 NAG C1 O1 sing N N 297 NAG C1 O5 sing N N 298 NAG C1 H1 sing N N 299 NAG C2 C3 sing N N 300 NAG C2 N2 sing N N 301 NAG C2 H2 sing N N 302 NAG C3 C4 sing N N 303 NAG C3 O3 sing N N 304 NAG C3 H3 sing N N 305 NAG C4 C5 sing N N 306 NAG C4 O4 sing N N 307 NAG C4 H4 sing N N 308 NAG C5 C6 sing N N 309 NAG C5 O5 sing N N 310 NAG C5 H5 sing N N 311 NAG C6 O6 sing N N 312 NAG C6 H61 sing N N 313 NAG C6 H62 sing N N 314 NAG C7 C8 sing N N 315 NAG C7 N2 sing N N 316 NAG C7 O7 doub N N 317 NAG C8 H81 sing N N 318 NAG C8 H82 sing N N 319 NAG C8 H83 sing N N 320 NAG N2 HN2 sing N N 321 NAG O1 HO1 sing N N 322 NAG O3 HO3 sing N N 323 NAG O4 HO4 sing N N 324 NAG O6 HO6 sing N N 325 PHE N CA sing N N 326 PHE N H sing N N 327 PHE N H2 sing N N 328 PHE CA C sing N N 329 PHE CA CB sing N N 330 PHE CA HA sing N N 331 PHE C O doub N N 332 PHE C OXT sing N N 333 PHE CB CG sing N N 334 PHE CB HB2 sing N N 335 PHE CB HB3 sing N N 336 PHE CG CD1 doub Y N 337 PHE CG CD2 sing Y N 338 PHE CD1 CE1 sing Y N 339 PHE CD1 HD1 sing N N 340 PHE CD2 CE2 doub Y N 341 PHE CD2 HD2 sing N N 342 PHE CE1 CZ doub Y N 343 PHE CE1 HE1 sing N N 344 PHE CE2 CZ sing Y N 345 PHE CE2 HE2 sing N N 346 PHE CZ HZ sing N N 347 PHE OXT HXT sing N N 348 PRO N CA sing N N 349 PRO N CD sing N N 350 PRO N H sing N N 351 PRO CA C sing N N 352 PRO CA CB sing N N 353 PRO CA HA sing N N 354 PRO C O doub N N 355 PRO C OXT sing N N 356 PRO CB CG sing N N 357 PRO CB HB2 sing N N 358 PRO CB HB3 sing N N 359 PRO CG CD sing N N 360 PRO CG HG2 sing N N 361 PRO CG HG3 sing N N 362 PRO CD HD2 sing N N 363 PRO CD HD3 sing N N 364 PRO OXT HXT sing N N 365 SER N CA sing N N 366 SER N H sing N N 367 SER N H2 sing N N 368 SER CA C sing N N 369 SER CA CB sing N N 370 SER CA HA sing N N 371 SER C O doub N N 372 SER C OXT sing N N 373 SER CB OG sing N N 374 SER CB HB2 sing N N 375 SER CB HB3 sing N N 376 SER OG HG sing N N 377 SER OXT HXT sing N N 378 THR N CA sing N N 379 THR N H sing N N 380 THR N H2 sing N N 381 THR CA C sing N N 382 THR CA CB sing N N 383 THR CA HA sing N N 384 THR C O doub N N 385 THR C OXT sing N N 386 THR CB OG1 sing N N 387 THR CB CG2 sing N N 388 THR CB HB sing N N 389 THR OG1 HG1 sing N N 390 THR CG2 HG21 sing N N 391 THR CG2 HG22 sing N N 392 THR CG2 HG23 sing N N 393 THR OXT HXT sing N N 394 TRP N CA sing N N 395 TRP N H sing N N 396 TRP N H2 sing N N 397 TRP CA C sing N N 398 TRP CA CB sing N N 399 TRP CA HA sing N N 400 TRP C O doub N N 401 TRP C OXT sing N N 402 TRP CB CG sing N N 403 TRP CB HB2 sing N N 404 TRP CB HB3 sing N N 405 TRP CG CD1 doub Y N 406 TRP CG CD2 sing Y N 407 TRP CD1 NE1 sing Y N 408 TRP CD1 HD1 sing N N 409 TRP CD2 CE2 doub Y N 410 TRP CD2 CE3 sing Y N 411 TRP NE1 CE2 sing Y N 412 TRP NE1 HE1 sing N N 413 TRP CE2 CZ2 sing Y N 414 TRP CE3 CZ3 doub Y N 415 TRP CE3 HE3 sing N N 416 TRP CZ2 CH2 doub Y N 417 TRP CZ2 HZ2 sing N N 418 TRP CZ3 CH2 sing Y N 419 TRP CZ3 HZ3 sing N N 420 TRP CH2 HH2 sing N N 421 TRP OXT HXT sing N N 422 TYR N CA sing N N 423 TYR N H sing N N 424 TYR N H2 sing N N 425 TYR CA C sing N N 426 TYR CA CB sing N N 427 TYR CA HA sing N N 428 TYR C O doub N N 429 TYR C OXT sing N N 430 TYR CB CG sing N N 431 TYR CB HB2 sing N N 432 TYR CB HB3 sing N N 433 TYR CG CD1 doub Y N 434 TYR CG CD2 sing Y N 435 TYR CD1 CE1 sing Y N 436 TYR CD1 HD1 sing N N 437 TYR CD2 CE2 doub Y N 438 TYR CD2 HD2 sing N N 439 TYR CE1 CZ doub Y N 440 TYR CE1 HE1 sing N N 441 TYR CE2 CZ sing Y N 442 TYR CE2 HE2 sing N N 443 TYR CZ OH sing N N 444 TYR OH HH sing N N 445 TYR OXT HXT sing N N 446 VAL N CA sing N N 447 VAL N H sing N N 448 VAL N H2 sing N N 449 VAL CA C sing N N 450 VAL CA CB sing N N 451 VAL CA HA sing N N 452 VAL C O doub N N 453 VAL C OXT sing N N 454 VAL CB CG1 sing N N 455 VAL CB CG2 sing N N 456 VAL CB HB sing N N 457 VAL CG1 HG11 sing N N 458 VAL CG1 HG12 sing N N 459 VAL CG1 HG13 sing N N 460 VAL CG2 HG21 sing N N 461 VAL CG2 HG22 sing N N 462 VAL CG2 HG23 sing N N 463 VAL OXT HXT sing N N 464 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal MEXT Japan 15K18496 1 MEXT Japan 17K07303 2 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 BMA 1 C BMA 1 X BMA 1003 n C 2 MAN 2 C MAN 2 X MAN 1004 n C 2 NAG 3 C NAG 3 X NAG 1005 n C 2 GAL 4 C GAL 4 X GAL 1006 n C 2 MAN 5 C MAN 5 X MAN 1002 n C 2 NAG 6 C NAG 6 X NAG 1001 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-2DManpa1-6]DManpb1-ROH' 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/4,6,5/[a1122h-1b_1-5][a1122h-1a_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5]/1-2-3-4-2-3/a3-b1_a6-e1_b2-c1_c4-d1_e2-f1' WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-Manp]{[(3+1)][a-D-Manp]{[(2+1)][b-D-GlcpNAc]{[(4+1)][b-D-Galp]{}}}[(6+1)][a-D-Manp]{[(2+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 MAN C1 O1 1 BMA O3 HO3 sing ? 2 2 3 NAG C1 O1 2 MAN O2 HO2 sing ? 3 2 4 GAL C1 O1 3 NAG O4 HO4 sing ? 4 2 5 MAN C1 O1 1 BMA O6 HO6 sing ? 5 2 6 NAG C1 O1 5 MAN O2 HO2 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 BMA 1 n 2 MAN 2 n 2 NAG 3 n 2 GAL 4 n 2 MAN 5 n 2 NAG 6 n # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1XXQ _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #