HEADER TRANSCRIPTION/DNA 11-APR-17 5XFR TITLE TERNARY COMPLEX OF MTF2, DNA AND HISTONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: METAL-RESPONSE ELEMENT-BINDING TRANSCRIPTION FACTOR 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 43-358; COMPND 5 SYNONYM: METAL REGULATORY TRANSCRIPTION FACTOR 2,METAL-RESPONSE COMPND 6 ELEMENT DNA-BINDING PROTEIN M96,POLYCOMB-LIKE PROTEIN 2,HPCL2; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PEPTIDE FROM HISTONE H3.1; COMPND 10 CHAIN: C, D; COMPND 11 SYNONYM: HISTONE H3/A,HISTONE H3/B,HISTONE H3/C,HISTONE H3/D,HISTONE COMPND 12 H3/F,HISTONE H3/H,HISTONE H3/I,HISTONE H3/J,HISTONE H3/K,HISTONE COMPND 13 H3/L; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: DNA (5'-D(*GP*GP*GP*CP*GP*GP*CP*CP*GP*CP*CP*CP*T)-3'); COMPND 17 CHAIN: E, F; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MTF2, PCL2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630 KEYWDS MTF2, PCL2, DNA, HISTONE, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Z.WANG,H.LI REVDAT 3 22-NOV-23 5XFR 1 REMARK REVDAT 2 27-SEP-17 5XFR 1 JRNL REVDAT 1 13-SEP-17 5XFR 0 JRNL AUTH H.LI,R.LIEFKE,J.JIANG,J.V.KURLAND,W.TIAN,P.DENG,W.ZHANG, JRNL AUTH 2 Q.HE,D.J.PATEL,M.L.BULYK,Y.SHI,Z.WANG JRNL TITL POLYCOMB-LIKE PROTEINS LINK THE PRC2 COMPLEX TO CPG ISLANDS JRNL REF NATURE V. 549 287 2017 JRNL REFN ESSN 1476-4687 JRNL PMID 28869966 JRNL DOI 10.1038/NATURE23881 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 52775 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2689 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6026 - 5.9992 0.99 2749 150 0.1903 0.2323 REMARK 3 2 5.9992 - 4.7633 1.00 2699 151 0.1913 0.2006 REMARK 3 3 4.7633 - 4.1616 1.00 2633 162 0.1656 0.1961 REMARK 3 4 4.1616 - 3.7813 1.00 2673 137 0.1766 0.2026 REMARK 3 5 3.7813 - 3.5104 1.00 2639 143 0.1872 0.2157 REMARK 3 6 3.5104 - 3.3035 1.00 2662 139 0.1998 0.2262 REMARK 3 7 3.3035 - 3.1381 1.00 2640 125 0.2135 0.1992 REMARK 3 8 3.1381 - 3.0015 1.00 2625 148 0.2325 0.2681 REMARK 3 9 3.0015 - 2.8859 1.00 2639 132 0.2253 0.2902 REMARK 3 10 2.8859 - 2.7864 1.00 2620 150 0.2250 0.2611 REMARK 3 11 2.7864 - 2.6993 1.00 2614 146 0.2253 0.2643 REMARK 3 12 2.6993 - 2.6221 1.00 2629 133 0.2266 0.2618 REMARK 3 13 2.6221 - 2.5531 1.00 2599 147 0.2324 0.2932 REMARK 3 14 2.5531 - 2.4908 1.00 2661 127 0.2348 0.2189 REMARK 3 15 2.4908 - 2.4342 1.00 2641 116 0.2226 0.2703 REMARK 3 16 2.4342 - 2.3824 1.00 2590 131 0.2349 0.2762 REMARK 3 17 2.3824 - 2.3347 1.00 2584 151 0.2278 0.2644 REMARK 3 18 2.3347 - 2.2907 1.00 2618 149 0.2328 0.3095 REMARK 3 19 2.2907 - 2.2498 1.00 2571 152 0.2269 0.2373 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5698 REMARK 3 ANGLE : 0.634 7803 REMARK 3 CHIRALITY : 0.027 827 REMARK 3 PLANARITY : 0.002 889 REMARK 3 DIHEDRAL : 18.064 2153 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XFR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-APR-17. REMARK 100 THE DEPOSITION ID IS D_1300002969. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52840 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 16.90 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 17.40 REMARK 200 R MERGE FOR SHELL (I) : 0.89400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5XFN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES MONOHYDRATE-PH 6.5, 0.2M REMARK 280 AMMONIUM SULFATE, 25% PEG MONOMETHYL ETHER 5000, 10% GLYCEROL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.74200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.48400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 67.48400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.74200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 42 REMARK 465 ALA A 43 REMARK 465 THR A 98 REMARK 465 GLY A 99 REMARK 465 SER A 100 REMARK 465 GLY A 101 REMARK 465 GLU A 102 REMARK 465 ALA A 358 REMARK 465 SER B 42 REMARK 465 ALA B 43 REMARK 465 CYS B 44 REMARK 465 GLY B 96 REMARK 465 ALA B 97 REMARK 465 THR B 98 REMARK 465 GLY B 99 REMARK 465 SER B 100 REMARK 465 GLY B 101 REMARK 465 GLU B 102 REMARK 465 MET B 103 REMARK 465 VAL B 104 REMARK 465 SER B 141 REMARK 465 VAL B 142 REMARK 465 ILE B 143 REMARK 465 ASP B 144 REMARK 465 SER B 145 REMARK 465 ASP B 146 REMARK 465 GLU B 147 REMARK 465 GLY C 33 REMARK 465 GLY C 34 REMARK 465 VAL C 35 REMARK 465 HIS C 39 REMARK 465 ARG C 40 REMARK 465 GLY D 33 REMARK 465 GLY D 34 REMARK 465 VAL D 35 REMARK 465 HIS D 39 REMARK 465 ARG D 40 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 72 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 DG F 1 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG F 9 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 144 39.88 -88.84 REMARK 500 CYS A 204 -168.37 63.61 REMARK 500 LYS A 221 -63.70 -97.32 REMARK 500 HIS A 304 57.60 39.65 REMARK 500 LEU B 72 51.83 -149.67 REMARK 500 PRO B 116 32.93 -86.24 REMARK 500 ASN B 117 54.51 -105.92 REMARK 500 LYS B 124 -56.03 -128.65 REMARK 500 CYS B 204 -171.57 62.40 REMARK 500 LEU B 214 -123.59 -97.20 REMARK 500 LYS B 215 70.58 -102.00 REMARK 500 LYS B 221 -66.38 -104.61 REMARK 500 VAL B 357 -166.10 -106.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU B 72 LYS B 73 143.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 105 SG REMARK 620 2 CYS A 108 SG 106.6 REMARK 620 3 HIS A 130 ND1 102.7 99.7 REMARK 620 4 CYS A 133 SG 117.3 113.4 115.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 122 SG REMARK 620 2 CYS A 125 SG 106.2 REMARK 620 3 CYS A 151 SG 110.7 115.4 REMARK 620 4 CYS A 154 SG 107.5 108.0 108.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 204 SG REMARK 620 2 CYS A 206 SG 114.2 REMARK 620 3 HIS A 227 ND1 99.2 94.0 REMARK 620 4 CYS A 230 SG 104.7 118.4 125.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 219 SG REMARK 620 2 CYS A 222 SG 106.3 REMARK 620 3 CYS A 249 SG 111.3 116.7 REMARK 620 4 CYS A 252 SG 108.0 107.0 107.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 105 SG REMARK 620 2 HIS B 130 ND1 104.5 REMARK 620 3 CYS B 133 SG 109.1 117.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 122 SG REMARK 620 2 CYS B 125 SG 108.9 REMARK 620 3 CYS B 151 SG 115.0 119.5 REMARK 620 4 CYS B 154 SG 107.7 100.2 103.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 204 SG REMARK 620 2 CYS B 206 SG 114.7 REMARK 620 3 HIS B 227 ND1 102.0 94.3 REMARK 620 4 CYS B 230 SG 105.6 119.9 119.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 219 SG REMARK 620 2 CYS B 222 SG 105.2 REMARK 620 3 CYS B 249 SG 115.6 113.5 REMARK 620 4 CYS B 252 SG 108.8 109.1 104.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5XFN RELATED DB: PDB REMARK 900 RELATED ID: 5XFO RELATED DB: PDB REMARK 900 RELATED ID: 5XFP RELATED DB: PDB REMARK 900 RELATED ID: 5XFQ RELATED DB: PDB DBREF 5XFR A 43 358 UNP Q9Y483 MTF2_HUMAN 43 358 DBREF 5XFR B 43 358 UNP Q9Y483 MTF2_HUMAN 43 358 DBREF 5XFR C 33 40 UNP P68431 H31_HUMAN 34 41 DBREF 5XFR D 33 40 UNP P68431 H31_HUMAN 34 41 DBREF 5XFR E 1 13 PDB 5XFR 5XFR 1 13 DBREF 5XFR F 1 13 PDB 5XFR 5XFR 1 13 SEQADV 5XFR SER A 42 UNP Q9Y483 EXPRESSION TAG SEQADV 5XFR SER B 42 UNP Q9Y483 EXPRESSION TAG SEQRES 1 A 317 SER ALA CYS LYS PHE GLU GLU GLY GLN ASP VAL LEU ALA SEQRES 2 A 317 ARG TRP SER ASP GLY LEU PHE TYR LEU GLY THR ILE LYS SEQRES 3 A 317 LYS ILE ASN ILE LEU LYS GLN SER CYS PHE ILE ILE PHE SEQRES 4 A 317 GLU ASP SER SER LYS SER TRP VAL LEU TRP LYS ASP ILE SEQRES 5 A 317 GLN THR GLY ALA THR GLY SER GLY GLU MET VAL CYS THR SEQRES 6 A 317 ILE CYS GLN GLU GLU TYR SER GLU ALA PRO ASN GLU MET SEQRES 7 A 317 VAL ILE CYS ASP LYS CYS GLY GLN GLY TYR HIS GLN LEU SEQRES 8 A 317 CYS HIS THR PRO HIS ILE ASP CYS SER VAL ILE ASP SER SEQRES 9 A 317 ASP GLU LYS TRP LEU CYS ARG GLN CYS VAL PHE ALA THR SEQRES 10 A 317 THR THR LYS ARG GLY GLY ALA LEU LYS LYS GLY PRO ASN SEQRES 11 A 317 ALA LYS ALA LEU GLN VAL MET LYS GLN THR LEU PRO TYR SEQRES 12 A 317 SER VAL ALA ASP LEU GLU TRP ASP ALA GLY HIS LYS THR SEQRES 13 A 317 ASN VAL GLN GLN CYS TYR CYS TYR CYS GLY GLY PRO GLY SEQRES 14 A 317 ASP TRP TYR LEU LYS MET LEU GLN CYS CYS LYS CYS LYS SEQRES 15 A 317 GLN TRP PHE HIS GLU ALA CYS VAL GLN CYS LEU GLN LYS SEQRES 16 A 317 PRO MET LEU PHE GLY ASP ARG PHE TYR THR PHE ILE CYS SEQRES 17 A 317 SER VAL CYS SER SER GLY PRO GLU TYR LEU LYS ARG LEU SEQRES 18 A 317 PRO LEU GLN TRP VAL ASP ILE ALA HIS LEU CYS LEU TYR SEQRES 19 A 317 ASN LEU SER VAL ILE HIS LYS LYS LYS TYR PHE ASP SER SEQRES 20 A 317 GLU LEU GLU LEU MET THR TYR ILE ASN GLU ASN TRP ASP SEQRES 21 A 317 ARG LEU HIS PRO GLY GLU LEU ALA ASP THR PRO LYS SER SEQRES 22 A 317 GLU ARG TYR GLU HIS VAL LEU GLU ALA LEU ASN ASP TYR SEQRES 23 A 317 LYS THR MET PHE MET SER GLY LYS GLU ILE LYS LYS LYS SEQRES 24 A 317 LYS HIS LEU PHE GLY LEU ARG ILE ARG VAL PRO PRO VAL SEQRES 25 A 317 PRO PRO ASN VAL ALA SEQRES 1 B 317 SER ALA CYS LYS PHE GLU GLU GLY GLN ASP VAL LEU ALA SEQRES 2 B 317 ARG TRP SER ASP GLY LEU PHE TYR LEU GLY THR ILE LYS SEQRES 3 B 317 LYS ILE ASN ILE LEU LYS GLN SER CYS PHE ILE ILE PHE SEQRES 4 B 317 GLU ASP SER SER LYS SER TRP VAL LEU TRP LYS ASP ILE SEQRES 5 B 317 GLN THR GLY ALA THR GLY SER GLY GLU MET VAL CYS THR SEQRES 6 B 317 ILE CYS GLN GLU GLU TYR SER GLU ALA PRO ASN GLU MET SEQRES 7 B 317 VAL ILE CYS ASP LYS CYS GLY GLN GLY TYR HIS GLN LEU SEQRES 8 B 317 CYS HIS THR PRO HIS ILE ASP CYS SER VAL ILE ASP SER SEQRES 9 B 317 ASP GLU LYS TRP LEU CYS ARG GLN CYS VAL PHE ALA THR SEQRES 10 B 317 THR THR LYS ARG GLY GLY ALA LEU LYS LYS GLY PRO ASN SEQRES 11 B 317 ALA LYS ALA LEU GLN VAL MET LYS GLN THR LEU PRO TYR SEQRES 12 B 317 SER VAL ALA ASP LEU GLU TRP ASP ALA GLY HIS LYS THR SEQRES 13 B 317 ASN VAL GLN GLN CYS TYR CYS TYR CYS GLY GLY PRO GLY SEQRES 14 B 317 ASP TRP TYR LEU LYS MET LEU GLN CYS CYS LYS CYS LYS SEQRES 15 B 317 GLN TRP PHE HIS GLU ALA CYS VAL GLN CYS LEU GLN LYS SEQRES 16 B 317 PRO MET LEU PHE GLY ASP ARG PHE TYR THR PHE ILE CYS SEQRES 17 B 317 SER VAL CYS SER SER GLY PRO GLU TYR LEU LYS ARG LEU SEQRES 18 B 317 PRO LEU GLN TRP VAL ASP ILE ALA HIS LEU CYS LEU TYR SEQRES 19 B 317 ASN LEU SER VAL ILE HIS LYS LYS LYS TYR PHE ASP SER SEQRES 20 B 317 GLU LEU GLU LEU MET THR TYR ILE ASN GLU ASN TRP ASP SEQRES 21 B 317 ARG LEU HIS PRO GLY GLU LEU ALA ASP THR PRO LYS SER SEQRES 22 B 317 GLU ARG TYR GLU HIS VAL LEU GLU ALA LEU ASN ASP TYR SEQRES 23 B 317 LYS THR MET PHE MET SER GLY LYS GLU ILE LYS LYS LYS SEQRES 24 B 317 LYS HIS LEU PHE GLY LEU ARG ILE ARG VAL PRO PRO VAL SEQRES 25 B 317 PRO PRO ASN VAL ALA SEQRES 1 C 8 GLY GLY VAL M3L LYS PRO HIS ARG SEQRES 1 D 8 GLY GLY VAL M3L LYS PRO HIS ARG SEQRES 1 E 13 DG DG DG DC DG DG DC DC DG DC DC DC DT SEQRES 1 F 13 DG DG DG DC DG DG DC DC DG DC DC DC DT MODRES 5XFR M3L C 36 LYS MODIFIED RESIDUE MODRES 5XFR M3L D 36 LYS MODIFIED RESIDUE HET M3L C 36 12 HET M3L D 36 12 HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET ZN B 401 1 HET ZN B 402 1 HET ZN B 403 1 HET ZN B 404 1 HETNAM M3L N-TRIMETHYLLYSINE HETNAM ZN ZINC ION FORMUL 3 M3L 2(C9 H21 N2 O2 1+) FORMUL 7 ZN 8(ZN 2+) FORMUL 15 HOH *331(H2 O) HELIX 1 AA1 CYS A 151 THR A 160 1 10 HELIX 2 AA2 GLY A 169 LYS A 179 1 11 HELIX 3 AA3 SER A 185 LEU A 189 5 5 HELIX 4 AA4 ALA A 229 VAL A 231 5 3 HELIX 5 AA5 CYS A 249 SER A 254 1 6 HELIX 6 AA6 GLN A 265 LYS A 282 1 18 HELIX 7 AA7 GLU A 291 ASN A 299 1 9 HELIX 8 AA8 ASN A 299 HIS A 304 1 6 HELIX 9 AA9 GLY A 306 THR A 311 5 6 HELIX 10 AB1 PRO A 312 TYR A 327 1 16 HELIX 11 AB2 LYS A 335 LYS A 338 5 4 HELIX 12 AB3 CYS B 151 THR B 158 1 8 HELIX 13 AB4 GLY B 169 LYS B 179 1 11 HELIX 14 AB5 SER B 185 LEU B 189 5 5 HELIX 15 AB6 ALA B 229 VAL B 231 5 3 HELIX 16 AB7 CYS B 249 SER B 254 1 6 HELIX 17 AB8 GLN B 265 LYS B 282 1 18 HELIX 18 AB9 GLU B 291 ASN B 299 1 9 HELIX 19 AC1 ASN B 299 HIS B 304 1 6 HELIX 20 AC2 PRO B 305 ALA B 309 5 5 HELIX 21 AC3 PRO B 312 TYR B 327 1 16 HELIX 22 AC4 LYS B 335 LYS B 338 5 4 SHEET 1 AA1 5 LYS A 85 LEU A 89 0 SHEET 2 AA1 5 SER A 75 PHE A 80 -1 N ILE A 78 O SER A 86 SHEET 3 AA1 5 PHE A 61 ASN A 70 -1 N LYS A 67 O PHE A 77 SHEET 4 AA1 5 ASP A 51 ARG A 55 -1 N ALA A 54 O TYR A 62 SHEET 5 AA1 5 ILE A 93 THR A 95 -1 O GLN A 94 N LEU A 53 SHEET 1 AA2 2 MET A 119 ILE A 121 0 SHEET 2 AA2 2 GLY A 128 HIS A 130 -1 O TYR A 129 N VAL A 120 SHEET 1 AA3 2 MET A 216 GLN A 218 0 SHEET 2 AA3 2 TRP A 225 HIS A 227 -1 O PHE A 226 N LEU A 217 SHEET 1 AA4 2 TYR A 245 ILE A 248 0 SHEET 2 AA4 2 TYR A 258 ARG A 261 -1 O TYR A 258 N ILE A 248 SHEET 1 AA5 3 PHE A 286 ASP A 287 0 SHEET 2 AA5 3 LEU A 343 LEU A 346 -1 O PHE A 344 N PHE A 286 SHEET 3 AA5 3 PHE A 331 SER A 333 -1 N MET A 332 O GLY A 345 SHEET 1 AA6 5 LYS B 85 LEU B 89 0 SHEET 2 AA6 5 SER B 75 PHE B 80 -1 N ILE B 78 O SER B 86 SHEET 3 AA6 5 PHE B 61 ASN B 70 -1 N LYS B 67 O PHE B 77 SHEET 4 AA6 5 ASP B 51 ARG B 55 -1 N ALA B 54 O TYR B 62 SHEET 5 AA6 5 ILE B 93 GLN B 94 -1 O GLN B 94 N LEU B 53 SHEET 1 AA7 2 MET B 119 ILE B 121 0 SHEET 2 AA7 2 GLY B 128 HIS B 130 -1 O TYR B 129 N VAL B 120 SHEET 1 AA8 2 MET B 216 GLN B 218 0 SHEET 2 AA8 2 TRP B 225 HIS B 227 -1 O PHE B 226 N LEU B 217 SHEET 1 AA9 2 TYR B 245 ILE B 248 0 SHEET 2 AA9 2 TYR B 258 ARG B 261 -1 O LYS B 260 N THR B 246 SHEET 1 AB1 3 PHE B 286 ASP B 287 0 SHEET 2 AB1 3 LEU B 343 LEU B 346 -1 O PHE B 344 N PHE B 286 SHEET 3 AB1 3 PHE B 331 SER B 333 -1 N MET B 332 O GLY B 345 LINK C M3L C 36 N LYS C 37 1555 1555 1.33 LINK C M3L D 36 N LYS D 37 1555 1555 1.33 LINK SG CYS A 105 ZN ZN A 401 1555 1555 2.44 LINK SG CYS A 108 ZN ZN A 401 1555 1555 2.45 LINK SG CYS A 122 ZN ZN A 402 1555 1555 2.28 LINK SG CYS A 125 ZN ZN A 402 1555 1555 2.37 LINK ND1 HIS A 130 ZN ZN A 401 1555 1555 2.01 LINK SG CYS A 133 ZN ZN A 401 1555 1555 2.40 LINK SG CYS A 151 ZN ZN A 402 1555 1555 2.37 LINK SG CYS A 154 ZN ZN A 402 1555 1555 2.32 LINK SG CYS A 204 ZN ZN A 404 1555 1555 2.47 LINK SG CYS A 206 ZN ZN A 404 1555 1555 2.40 LINK SG CYS A 219 ZN ZN A 403 1555 1555 2.42 LINK SG CYS A 222 ZN ZN A 403 1555 1555 2.30 LINK ND1 HIS A 227 ZN ZN A 404 1555 1555 2.15 LINK SG CYS A 230 ZN ZN A 404 1555 1555 2.33 LINK SG CYS A 249 ZN ZN A 403 1555 1555 2.31 LINK SG CYS A 252 ZN ZN A 403 1555 1555 2.41 LINK SG CYS B 105 ZN ZN B 402 1555 1555 2.90 LINK SG CYS B 122 ZN ZN B 401 1555 1555 2.49 LINK SG CYS B 125 ZN ZN B 401 1555 1555 2.32 LINK ND1 HIS B 130 ZN ZN B 402 1555 1555 2.46 LINK SG CYS B 133 ZN ZN B 402 1555 1555 2.47 LINK SG CYS B 151 ZN ZN B 401 1555 1555 2.47 LINK SG CYS B 154 ZN ZN B 401 1555 1555 2.42 LINK SG CYS B 204 ZN ZN B 403 1555 1555 2.37 LINK SG CYS B 206 ZN ZN B 403 1555 1555 2.36 LINK SG CYS B 219 ZN ZN B 404 1555 1555 2.37 LINK SG CYS B 222 ZN ZN B 404 1555 1555 2.36 LINK ND1 HIS B 227 ZN ZN B 403 1555 1555 2.17 LINK SG CYS B 230 ZN ZN B 403 1555 1555 2.38 LINK SG CYS B 249 ZN ZN B 404 1555 1555 2.28 LINK SG CYS B 252 ZN ZN B 404 1555 1555 2.33 CISPEP 1 ALA A 115 PRO A 116 0 1.93 CISPEP 2 THR A 135 PRO A 136 0 -0.07 CISPEP 3 ALA B 115 PRO B 116 0 6.27 CISPEP 4 THR B 135 PRO B 136 0 2.06 SITE 1 AC1 4 CYS A 105 CYS A 108 HIS A 130 CYS A 133 SITE 1 AC2 4 CYS A 122 CYS A 125 CYS A 151 CYS A 154 SITE 1 AC3 4 CYS A 219 CYS A 222 CYS A 249 CYS A 252 SITE 1 AC4 4 CYS A 204 CYS A 206 HIS A 227 CYS A 230 SITE 1 AC5 4 CYS B 122 CYS B 125 CYS B 151 CYS B 154 SITE 1 AC6 4 CYS B 105 CYS B 108 HIS B 130 CYS B 133 SITE 1 AC7 4 CYS B 204 CYS B 206 HIS B 227 CYS B 230 SITE 1 AC8 4 CYS B 219 CYS B 222 CYS B 249 CYS B 252 CRYST1 137.743 137.743 101.226 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007260 0.004192 0.000000 0.00000 SCALE2 0.000000 0.008383 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009879 0.00000