HEADER ONCOPROTEIN 13-APR-17 5XGC TITLE CRYSTAL STRUCTURE OF SMGGDS-558 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAP1 GTPASE-GDP DISSOCIATION STIMULATOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 61-558; COMPND 5 SYNONYM: EXCHANGE FACTOR SMGGDS,SMG GDS PROTEIN,SMG P21 STIMULATORY COMPND 6 GDP/GTP EXCHANGE PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAP1GDS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ARMADILLO GEF, ONCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.SHIMIZU,S.TOMA-FUKAI,T.SHIMIZU REVDAT 4 27-MAR-24 5XGC 1 REMARK REVDAT 3 23-AUG-17 5XGC 1 JRNL REVDAT 2 05-JUL-17 5XGC 1 JRNL REVDAT 1 28-JUN-17 5XGC 0 JRNL AUTH H.SHIMIZU,S.TOMA-FUKAI,S.SAIJO,N.SHIMIZU,K.KONTANI,T.KATADA, JRNL AUTH 2 T.SHIMIZU JRNL TITL STRUCTURE-BASED ANALYSIS OF THE GUANINE NUCLEOTIDE EXCHANGE JRNL TITL 2 FACTOR SMGGDS REVEALS ARMADILLO-REPEAT MOTIFS AND KEY JRNL TITL 3 REGIONS FOR ACTIVITY AND GTPASE BINDING JRNL REF J. BIOL. CHEM. V. 292 13441 2017 JRNL REFN ESSN 1083-351X JRNL PMID 28630045 JRNL DOI 10.1074/JBC.M117.792556 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28726 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1546 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2089 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3457 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 74 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.226 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.189 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.161 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.159 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3491 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3555 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4726 ; 1.239 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8146 ; 0.806 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 471 ; 5.017 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;37.512 ;26.231 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 620 ;16.301 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;20.867 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 588 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3985 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 703 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1890 ; 3.035 ; 6.493 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1889 ; 3.035 ; 6.489 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2359 ; 4.432 ; 9.719 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2360 ; 4.431 ; 9.723 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1601 ; 3.546 ; 6.436 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1602 ; 3.545 ; 6.440 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2368 ; 5.439 ; 9.595 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4082 ; 7.478 ;50.332 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4076 ; 7.474 ;50.350 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5XGC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-APR-17. REMARK 100 THE DEPOSITION ID IS D_1300003471. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32018 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 47.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3,350, MGCL2, HEPES, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 97.16500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.55750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 97.16500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.55750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 56 REMARK 465 PRO A 57 REMARK 465 LEU A 58 REMARK 465 GLY A 59 REMARK 465 SER A 60 REMARK 465 GLN A 61 REMARK 465 SER A 62 REMARK 465 SER A 63 REMARK 465 CYS A 64 REMARK 465 LYS A 65 REMARK 465 ALA A 66 REMARK 465 LYS A 67 REMARK 465 VAL A 68 REMARK 465 ALA A 69 REMARK 465 ASN A 70 REMARK 465 ILE A 71 REMARK 465 ILE A 72 REMARK 465 ALA A 73 REMARK 465 GLU A 74 REMARK 465 VAL A 75 REMARK 465 ALA A 76 REMARK 465 LYS A 77 REMARK 465 ASN A 78 REMARK 465 LEU A 493 REMARK 465 ALA A 494 REMARK 465 ASP A 495 REMARK 465 GLU A 496 REMARK 465 ARG A 497 REMARK 465 SER A 498 REMARK 465 ALA A 499 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 92 OG REMARK 470 GLN A 96 CG CD OE1 NE2 REMARK 470 GLN A 145 CG CD OE1 NE2 REMARK 470 PRO A 500 CG CD REMARK 470 GLU A 501 CG CD OE1 OE2 REMARK 470 ILE A 502 CG1 CG2 CD1 REMARK 470 LYS A 503 CG CD CE NZ REMARK 470 TYR A 504 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 505 CG OD1 ND2 REMARK 470 SER A 506 OG REMARK 470 MET A 507 CG SD CE REMARK 470 VAL A 508 CG1 CG2 REMARK 470 LEU A 509 CG CD1 CD2 REMARK 470 ILE A 510 CG1 CG2 CD1 REMARK 470 CYS A 511 SG REMARK 470 LEU A 513 CG CD1 CD2 REMARK 470 MET A 514 CG SD CE REMARK 470 SER A 516 OG REMARK 470 GLU A 517 CG CD OE1 OE2 REMARK 470 CYS A 518 SG REMARK 470 LEU A 519 CG CD1 CD2 REMARK 470 HIS A 520 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 521 CG CD CE NZ REMARK 470 GLU A 522 CG CD OE1 OE2 REMARK 470 VAL A 523 CG1 CG2 REMARK 470 GLN A 524 CG CD OE1 NE2 REMARK 470 ASP A 525 CG OD1 OD2 REMARK 470 LEU A 526 CG CD1 CD2 REMARK 470 PHE A 528 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 529 CG CD1 CD2 REMARK 470 ASP A 530 CG OD1 OD2 REMARK 470 VAL A 531 CG1 CG2 REMARK 470 VAL A 532 CG1 CG2 REMARK 470 SER A 533 OG REMARK 470 LYS A 534 CG CD CE NZ REMARK 470 LEU A 535 CG CD1 CD2 REMARK 470 ARG A 536 CG CD NE CZ NH1 NH2 REMARK 470 SER A 537 OG REMARK 470 HIS A 538 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 539 CG CD OE1 OE2 REMARK 470 ASN A 540 CG OD1 ND2 REMARK 470 LYS A 541 CG CD CE NZ REMARK 470 SER A 542 OG REMARK 470 VAL A 543 CG1 CG2 REMARK 470 GLN A 545 CG CD OE1 NE2 REMARK 470 GLN A 546 CG CD OE1 NE2 REMARK 470 SER A 548 OG REMARK 470 LEU A 549 CG CD1 CD2 REMARK 470 THR A 550 OG1 CG2 REMARK 470 GLU A 551 CG CD OE1 OE2 REMARK 470 GLN A 552 CG CD OE1 NE2 REMARK 470 ARG A 553 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 554 CG CD1 CD2 REMARK 470 THR A 555 OG1 CG2 REMARK 470 VAL A 556 CG1 CG2 REMARK 470 GLU A 557 CG CD OE1 OE2 REMARK 470 SER A 558 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 118 50.38 -92.57 REMARK 500 GLU A 322 -70.05 -62.59 REMARK 500 ALA A 383 44.03 -146.04 REMARK 500 GLU A 472 42.75 -147.82 REMARK 500 GLU A 501 -116.35 67.95 REMARK 500 GLU A 517 -70.90 -63.91 REMARK 500 GLU A 522 -118.13 56.87 REMARK 500 LEU A 535 -113.19 45.08 REMARK 500 REMARK 500 REMARK: NULL DBREF 5XGC A 61 558 UNP P52306 GDS1_HUMAN 61 558 SEQADV 5XGC GLY A 56 UNP P52306 EXPRESSION TAG SEQADV 5XGC PRO A 57 UNP P52306 EXPRESSION TAG SEQADV 5XGC LEU A 58 UNP P52306 EXPRESSION TAG SEQADV 5XGC GLY A 59 UNP P52306 EXPRESSION TAG SEQADV 5XGC SER A 60 UNP P52306 EXPRESSION TAG SEQRES 1 A 503 GLY PRO LEU GLY SER GLN SER SER CYS LYS ALA LYS VAL SEQRES 2 A 503 ALA ASN ILE ILE ALA GLU VAL ALA LYS ASN GLU PHE MET SEQRES 3 A 503 ARG ILE PRO CYS VAL ASP ALA GLY LEU ILE SER PRO LEU SEQRES 4 A 503 VAL GLN LEU LEU ASN SER LYS ASP GLN GLU VAL LEU LEU SEQRES 5 A 503 GLN THR GLY ARG ALA LEU GLY ASN ILE CYS TYR ASP SER SEQRES 6 A 503 HIS SER LEU GLN ALA GLN LEU ILE ASN MET GLY VAL ILE SEQRES 7 A 503 PRO THR LEU VAL LYS LEU LEU GLY ILE HIS CYS GLN ASN SEQRES 8 A 503 ALA ALA LEU THR GLU MET CYS LEU VAL ALA PHE GLY ASN SEQRES 9 A 503 LEU ALA GLU LEU GLU SER SER LYS GLU GLN PHE ALA SER SEQRES 10 A 503 THR ASN ILE ALA GLU GLU LEU VAL LYS LEU PHE LYS LYS SEQRES 11 A 503 GLN ILE GLU HIS ASP LYS ARG GLU MET ILE PHE GLU VAL SEQRES 12 A 503 LEU ALA PRO LEU ALA GLU ASN ASP ALA ILE LYS LEU GLN SEQRES 13 A 503 LEU VAL GLU ALA GLY LEU VAL GLU CYS LEU LEU GLU ILE SEQRES 14 A 503 VAL GLN GLN LYS VAL ASP SER ASP LYS GLU ASP ASP ILE SEQRES 15 A 503 THR GLU LEU LYS THR GLY SER ASP LEU MET VAL LEU LEU SEQRES 16 A 503 LEU LEU GLY ASP GLU SER MET GLN LYS LEU PHE GLU GLY SEQRES 17 A 503 GLY LYS GLY SER VAL PHE GLN ARG VAL LEU SER TRP ILE SEQRES 18 A 503 PRO SER ASN ASN HIS GLN LEU GLN LEU ALA GLY ALA LEU SEQRES 19 A 503 ALA ILE ALA ASN PHE ALA ARG ASN ASP ALA ASN CYS ILE SEQRES 20 A 503 HIS MET VAL ASP ASN GLY ILE VAL GLU LYS LEU MET ASP SEQRES 21 A 503 LEU LEU ASP ARG HIS VAL GLU ASP GLY ASN VAL THR VAL SEQRES 22 A 503 GLN HIS ALA ALA LEU SER ALA LEU ARG ASN LEU ALA ILE SEQRES 23 A 503 PRO VAL ILE ASN LYS ALA LYS MET LEU SER ALA GLY VAL SEQRES 24 A 503 THR GLU ALA VAL LEU LYS PHE LEU LYS SER GLU MET PRO SEQRES 25 A 503 PRO VAL GLN PHE LYS LEU LEU GLY THR LEU ARG MET LEU SEQRES 26 A 503 ILE ASP ALA GLN ALA GLU ALA ALA GLU GLN LEU GLY LYS SEQRES 27 A 503 ASN VAL LYS LEU VAL GLU ARG LEU VAL GLU TRP CYS GLU SEQRES 28 A 503 ALA LYS ASP HIS ALA GLY VAL MET GLY GLU SER ASN ARG SEQRES 29 A 503 LEU LEU SER ALA LEU ILE ARG HIS SER LYS SER LYS ASP SEQRES 30 A 503 VAL ILE LYS THR ILE VAL GLN SER GLY GLY ILE LYS HIS SEQRES 31 A 503 LEU VAL THR MET ALA THR SER GLU HIS VAL ILE MET GLN SEQRES 32 A 503 ASN GLU ALA LEU VAL ALA LEU ALA LEU ILE ALA ALA LEU SEQRES 33 A 503 GLU LEU GLY THR ALA GLU LYS ASP LEU GLU SER ALA LYS SEQRES 34 A 503 LEU VAL GLN ILE LEU HIS ARG LEU LEU ALA ASP GLU ARG SEQRES 35 A 503 SER ALA PRO GLU ILE LYS TYR ASN SER MET VAL LEU ILE SEQRES 36 A 503 CYS ALA LEU MET GLY SER GLU CYS LEU HIS LYS GLU VAL SEQRES 37 A 503 GLN ASP LEU ALA PHE LEU ASP VAL VAL SER LYS LEU ARG SEQRES 38 A 503 SER HIS GLU ASN LYS SER VAL ALA GLN GLN ALA SER LEU SEQRES 39 A 503 THR GLU GLN ARG LEU THR VAL GLU SER FORMUL 2 HOH *74(H2 O) HELIX 1 AA1 ASP A 87 LEU A 98 1 12 HELIX 2 AA2 ASP A 102 ILE A 116 1 15 HELIX 3 AA3 SER A 120 MET A 130 1 11 HELIX 4 AA4 GLY A 131 HIS A 143 1 13 HELIX 5 AA5 ASN A 146 ALA A 161 1 16 HELIX 6 AA6 LEU A 163 ALA A 171 1 9 HELIX 7 AA7 ASN A 174 GLN A 186 1 13 HELIX 8 AA8 GLU A 188 ALA A 203 1 16 HELIX 9 AA9 ASN A 205 ALA A 215 1 11 HELIX 10 AB1 GLY A 216 VAL A 229 1 14 HELIX 11 AB2 LYS A 233 LEU A 251 1 19 HELIX 12 AB3 GLY A 253 GLU A 262 1 10 HELIX 13 AB4 GLY A 263 LYS A 265 5 3 HELIX 14 AB5 GLY A 266 ILE A 276 1 11 HELIX 15 AB6 ASN A 280 ALA A 295 1 16 HELIX 16 AB7 ASN A 297 ASN A 307 1 11 HELIX 17 AB8 GLY A 308 ARG A 319 1 12 HELIX 18 AB9 ASN A 325 ALA A 340 1 16 HELIX 19 AC1 PRO A 342 GLY A 353 1 12 HELIX 20 AC2 GLY A 353 LYS A 360 1 8 HELIX 21 AC3 MET A 366 ILE A 381 1 16 HELIX 22 AC4 GLN A 384 LYS A 393 1 10 HELIX 23 AC5 ASN A 394 GLU A 406 1 13 HELIX 24 AC6 HIS A 410 LYS A 429 1 20 HELIX 25 AC7 SER A 430 GLY A 441 1 12 HELIX 26 AC8 GLY A 441 ALA A 450 1 10 HELIX 27 AC9 HIS A 454 ALA A 483 1 30 HELIX 28 AD1 LYS A 484 LEU A 492 1 9 HELIX 29 AD2 PRO A 500 LYS A 503 5 4 HELIX 30 AD3 TYR A 504 MET A 514 1 11 HELIX 31 AD4 GLU A 522 ASP A 525 5 4 HELIX 32 AD5 LEU A 526 VAL A 532 1 7 HELIX 33 AD6 ASN A 540 GLU A 557 1 18 CISPEP 1 LYS A 521 GLU A 522 0 10.04 CISPEP 2 ARG A 536 SER A 537 0 1.68 CISPEP 3 SER A 537 HIS A 538 0 12.18 CRYST1 194.330 51.115 52.444 90.00 92.77 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005146 0.000000 0.000249 0.00000 SCALE2 0.000000 0.019564 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019090 0.00000