HEADER TRANSCRIPTION 13-APR-17 5XGD TITLE CRYSTAL STRUCTURE OF THE PAS-GGDEF-EAL DOMAIN OF PA0861 FROM TITLE 2 PSEUDOMONAS AERUGINOSA IN COMPLEX WITH GTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN PA0861; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 233-800; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / DSM SOURCE 3 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SOURCE 4 ORGANISM_TAXID: 208964; SOURCE 5 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 6 / 1C / PRS 101 / PAO1; SOURCE 7 GENE: PA0861; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PNIC-CH2 KEYWDS PAS DOMAIN, GGDEF-EAL DOMAIN, PSEUDOMONAS AERUGINOSA, BIOFILM, RBDA, KEYWDS 2 PA0861, GTP, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR C.LIU,C.W.LIEW,R.SREEKANTH,J.LESCAR REVDAT 5 27-MAR-24 5XGD 1 REMARK REVDAT 4 03-APR-19 5XGD 1 JRNL REVDAT 3 04-APR-18 5XGD 1 JRNL REVDAT 2 28-FEB-18 5XGD 1 JRNL REVDAT 1 20-DEC-17 5XGD 0 JRNL AUTH C.LIU,C.W.LIEW,Y.H.WONG,S.T.TAN,W.H.POH,M.S.S.MANIMEKALAI, JRNL AUTH 2 S.RAJAN,L.XIN,Z.X.LIANG,G.GRUBER,S.A.RICE,J.LESCAR JRNL TITL INSIGHTS INTO BIOFILM DISPERSAL REGULATION FROM THE CRYSTAL JRNL TITL 2 STRUCTURE OF THE PAS-GGDEF-EAL REGION OF RBDA FROM JRNL TITL 3 PSEUDOMONAS AERUGINOSA. JRNL REF J. BACTERIOL. V. 200 2018 JRNL REFN ESSN 1098-5530 JRNL PMID 29109186 JRNL DOI 10.1128/JB.00515-17 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 18292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 935 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2917 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2041 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2774 REMARK 3 BIN R VALUE (WORKING SET) : 0.2009 REMARK 3 BIN FREE R VALUE : 0.2627 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 143 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4294 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.90900 REMARK 3 B22 (A**2) : 1.90900 REMARK 3 B33 (A**2) : -3.81800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.320 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.357 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.847 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4405 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5971 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1567 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 115 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 658 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4405 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 572 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5228 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.14 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.57 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.87 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 39.9147 0.9178 90.8629 REMARK 3 T TENSOR REMARK 3 T11: -0.0958 T22: -0.0480 REMARK 3 T33: -0.1564 T12: 0.0107 REMARK 3 T13: 0.0517 T23: -0.0562 REMARK 3 L TENSOR REMARK 3 L11: 0.9376 L22: 0.3756 REMARK 3 L33: 1.0430 L12: 0.0699 REMARK 3 L13: 0.2505 L23: 0.0888 REMARK 3 S TENSOR REMARK 3 S11: 0.0142 S12: 0.0186 S13: 0.0746 REMARK 3 S21: -0.0589 S22: 0.0397 S23: -0.0817 REMARK 3 S31: -0.0905 S32: 0.1391 S33: -0.0539 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XGD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-APR-17. REMARK 100 THE DEPOSITION ID IS D_1300003475. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18306 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 47.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.27600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.80 REMARK 200 R MERGE FOR SHELL (I) : 1.07000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES/IMIDAZOLE AT PH 6.5, 0.1M REMARK 280 CARBOXYLIC ACID, 10% (W/V) PEG 4000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 67.36450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 38.89291 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 69.98433 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 67.36450 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 38.89291 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 69.98433 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 67.36450 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 38.89291 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 69.98433 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 67.36450 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 38.89291 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 69.98433 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 67.36450 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 38.89291 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 69.98433 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 67.36450 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 38.89291 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 69.98433 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 77.78582 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 139.96867 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 77.78582 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 139.96867 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 77.78582 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 139.96867 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 77.78582 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 139.96867 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 77.78582 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 139.96867 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 77.78582 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 139.96867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 209.95300 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1201 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 233 REMARK 465 GLN A 234 REMARK 465 GLU A 235 REMARK 465 VAL A 236 REMARK 465 GLU A 237 REMARK 465 ASN A 238 REMARK 465 ALA A 239 REMARK 465 LEU A 240 REMARK 465 SER A 301 REMARK 465 ARG A 302 REMARK 465 GLU A 303 REMARK 465 GLU A 304 REMARK 465 GLY A 305 REMARK 465 MET A 306 REMARK 465 LEU A 307 REMARK 465 LEU A 308 REMARK 465 ILE A 309 REMARK 465 GLN A 798 REMARK 465 PRO A 799 REMARK 465 PRO A 800 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 296 71.10 -111.13 REMARK 500 VAL A 297 -158.65 -83.55 REMARK 500 ILE A 317 72.39 174.45 REMARK 500 ASP A 318 -169.23 -79.44 REMARK 500 ASP A 331 -86.38 -143.12 REMARK 500 SER A 333 -175.27 54.65 REMARK 500 SER A 334 140.61 -18.43 REMARK 500 ASN A 402 61.64 -106.79 REMARK 500 GLN A 415 58.23 38.54 REMARK 500 ARG A 529 167.42 63.78 REMARK 500 VAL A 540 64.15 -113.61 REMARK 500 GLU A 541 -37.40 -167.93 REMARK 500 GLU A 579 -64.71 -108.09 REMARK 500 GLU A 580 177.33 56.25 REMARK 500 PHE A 603 -27.83 -152.19 REMARK 500 PHE A 795 -63.57 -109.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1289 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A1290 DISTANCE = 7.54 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 412 OD1 REMARK 620 2 LEU A 413 O 99.9 REMARK 620 3 ASP A 455 OD2 98.6 76.4 REMARK 620 4 GTP A 901 O3G 106.9 99.9 154.4 REMARK 620 5 GTP A 901 O2B 172.0 84.0 75.5 79.0 REMARK 620 6 GTP A 901 O1A 103.5 149.6 81.2 91.6 70.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5XGB RELATED DB: PDB REMARK 900 RELATED ID: 5XGE RELATED DB: PDB DBREF 5XGD A 233 800 UNP Q9I580 Q9I580_PSEAE 233 800 SEQRES 1 A 568 ARG GLN GLU VAL GLU ASN ALA LEU ASP ALA GLU ARG GLU SEQRES 2 A 568 ARG ALA GLN ILE THR LEU ALA SER ILE GLY ASP GLY VAL SEQRES 3 A 568 ILE THR ALA ASP THR GLN GLY GLY ILE SER TYR LEU ASN SEQRES 4 A 568 PRO ALA ALA GLU GLN MET THR ASN TRP THR LEU ASP LYS SEQRES 5 A 568 ALA ARG GLY LEU PRO LEU ALA SER LEU PHE ARG ILE VAL SEQRES 6 A 568 ASP GLU SER SER ARG GLU GLU GLY MET LEU LEU ILE GLU SEQRES 7 A 568 GLN ILE LEU SER GLY GLU ILE ASP GLY GLY ARG GLU HIS SEQRES 8 A 568 SER LYS LEU VAL LEU ARG HIS ASP GLY SER SER VAL PRO SEQRES 9 A 568 VAL THR LEU VAL GLY ALA PRO ILE HIS ARG GLY ALA GLU SEQRES 10 A 568 ILE THR GLY VAL VAL LEU VAL LEU HIS ASP MET THR ARG SEQRES 11 A 568 GLU ARG GLN TYR MET ALA ARG LEU SER TRP GLN ALA THR SEQRES 12 A 568 HIS ASP ALA LEU THR GLY LEU THR ASN ARG ARG GLU PHE SEQRES 13 A 568 GLU TYR ARG LEU GLN ILE ALA LEU GLU ARG LEU GLU ARG SEQRES 14 A 568 ASN SER GLY ARG HIS ALA LEU MET PHE LEU ASP LEU ASP SEQRES 15 A 568 GLN PHE LYS LEU VAL ASN ASP THR CYS GLY HIS ALA ALA SEQRES 16 A 568 GLY ASP GLU LEU LEU ARG GLN VAL CYS THR LEU LEU GLN SEQRES 17 A 568 GLN GLY LEU ARG GLU GLY ASP THR LEU ALA ARG LEU GLY SEQRES 18 A 568 GLY ASP GLU PHE GLY ILE LEU LEU GLU ASN CYS PRO ALA SEQRES 19 A 568 GLU LYS ALA VAL GLU ILE ALA ASP HIS LEU ARG LYS THR SEQRES 20 A 568 ILE GLN ASP LEU HIS PHE THR TRP SER GLY GLN PRO PHE SEQRES 21 A 568 ASN CYS THR VAL SER VAL GLY LEU VAL HIS LEU LEU PRO SEQRES 22 A 568 GLY ILE SER THR LEU GLU GLU ALA LEU ARG SER ALA ASP SEQRES 23 A 568 MET ALA CYS TYR MET ALA LYS GLU LYS GLY ARG ASN ARG SEQRES 24 A 568 VAL GLN VAL PHE HIS GLN ASP ASP VAL GLU LEU SER MET SEQRES 25 A 568 ARG PHE GLY GLU MET THR TRP VAL GLN ARG ILE HIS LEU SEQRES 26 A 568 ALA LEU GLU GLU ASP ARG PHE SER LEU TYR ALA GLN PRO SEQRES 27 A 568 ILE VAL PRO LEU GLY GLU GLY ALA GLU GLU GLY LEU HIS SEQRES 28 A 568 VAL GLU LEU LEU LEU ARG LEU ARG ASP GLU GLY GLY ARG SEQRES 29 A 568 LEU VAL PRO PRO LEU SER PHE ILE PRO ALA ALA GLU ARG SEQRES 30 A 568 TYR GLY LEU MET THR LEU ILE ASP ARG TRP VAL VAL GLU SEQRES 31 A 568 ASN ALA PHE ARG THR LEU VAL GLU ARG ALA GLN ASP PRO SEQRES 32 A 568 ARG ALA GLU PRO ILE GLY THR CYS ALA ILE ASN LEU SER SEQRES 33 A 568 GLY ALA THR ILE GLY ASP GLU SER PHE LEU GLN PHE LEU SEQRES 34 A 568 THR GLU LEU PHE ALA ARG TYR ARG ILE PRO PRO GLN THR SEQRES 35 A 568 ILE CYS PHE GLU VAL THR GLU THR VAL ALA VAL ALA ASN SEQRES 36 A 568 LEU ALA SER ALA ILE ARG PHE ILE ASN GLU LEU LYS ASP SEQRES 37 A 568 THR GLY CYS ARG PHE SER LEU ASP ASP PHE CYS ALA GLY SEQRES 38 A 568 MET SER SER PHE ILE TYR LEU LYS HIS LEU PRO VAL ASP SEQRES 39 A 568 TYR LEU LYS ILE ASP GLY SER PHE VAL LYS ASP MET LEU SEQRES 40 A 568 GLU ASP PRO ILE ASP ARG ALA MET VAL GLN VAL ILE ASN SEQRES 41 A 568 HIS ILE GLY HIS VAL MET GLY LYS ARG THR ILE ALA GLU SEQRES 42 A 568 PHE VAL GLU THR VAL GLU VAL MET GLU ALA LEU ARG GLU SEQRES 43 A 568 ILE GLY ILE ASP TYR ALA GLN GLY LEU ALA ILE GLY ALA SEQRES 44 A 568 PRO LEU PRO PHE SER ARG GLN PRO PRO HET GTP A 901 32 HET MG A 902 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 GTP C10 H16 N5 O14 P3 FORMUL 3 MG MG 2+ FORMUL 4 HOH *290(H2 O) HELIX 1 AA1 ALA A 242 ILE A 254 1 13 HELIX 2 AA2 ASN A 271 ASN A 279 1 9 HELIX 3 AA3 THR A 281 ARG A 286 1 6 HELIX 4 AA4 PRO A 289 LEU A 293 5 5 HELIX 5 AA5 GLU A 310 SER A 314 5 5 HELIX 6 AA6 THR A 361 GLN A 365 5 5 HELIX 7 AA7 TYR A 366 HIS A 376 1 11 HELIX 8 AA8 ASN A 384 ARG A 398 1 15 HELIX 9 AA9 GLN A 415 GLY A 424 1 10 HELIX 10 AB1 GLY A 424 LEU A 443 1 20 HELIX 11 AB2 PRO A 465 ASP A 482 1 18 HELIX 12 AB3 THR A 509 LYS A 527 1 19 HELIX 13 AB4 GLU A 541 GLU A 561 1 21 HELIX 14 AB5 PRO A 599 SER A 602 5 4 HELIX 15 AB6 PHE A 603 TYR A 610 1 8 HELIX 16 AB7 LEU A 612 GLN A 633 1 22 HELIX 17 AB8 SER A 648 GLY A 653 1 6 HELIX 18 AB9 SER A 656 ARG A 669 1 14 HELIX 19 AC1 PRO A 671 GLN A 673 5 3 HELIX 20 AC2 GLU A 681 ASN A 687 1 7 HELIX 21 AC3 ASN A 687 GLY A 702 1 16 HELIX 22 AC4 GLY A 713 LEU A 723 1 11 HELIX 23 AC5 ASP A 731 ASP A 737 1 7 HELIX 24 AC6 ASP A 741 MET A 758 1 18 HELIX 25 AC7 THR A 769 GLY A 780 1 12 SHEET 1 AA1 5 ILE A 267 LEU A 270 0 SHEET 2 AA1 5 GLY A 257 ASP A 262 -1 N THR A 260 O SER A 268 SHEET 3 AA1 5 ILE A 350 ASP A 359 -1 O LEU A 357 N GLY A 257 SHEET 4 AA1 5 PRO A 336 HIS A 345 -1 N VAL A 340 O VAL A 356 SHEET 5 AA1 5 HIS A 323 LEU A 326 -1 N HIS A 323 O LEU A 339 SHEET 1 AA2 5 THR A 448 GLY A 453 0 SHEET 2 AA2 5 GLU A 456 LEU A 461 -1 O GLY A 458 N ALA A 450 SHEET 3 AA2 5 HIS A 406 LEU A 413 -1 N LEU A 411 O PHE A 457 SHEET 4 AA2 5 VAL A 496 LEU A 503 -1 O LEU A 503 N HIS A 406 SHEET 5 AA2 5 VAL A 532 VAL A 534 1 O GLN A 533 N VAL A 498 SHEET 1 AA3 2 HIS A 484 TRP A 487 0 SHEET 2 AA3 2 GLN A 490 ASN A 493 -1 O PHE A 492 N PHE A 485 SHEET 1 AA4 4 LEU A 597 VAL A 598 0 SHEET 2 AA4 4 LEU A 582 ARG A 591 -1 N LEU A 590 O VAL A 598 SHEET 3 AA4 4 PHE A 564 PRO A 573 -1 N GLN A 569 O GLU A 585 SHEET 4 AA4 4 LEU A 793 PRO A 794 -1 O LEU A 793 N ALA A 568 SHEET 1 AA510 LEU A 597 VAL A 598 0 SHEET 2 AA510 LEU A 582 ARG A 591 -1 N LEU A 590 O VAL A 598 SHEET 3 AA510 ILE A 640 ASN A 646 1 O ALA A 644 N LEU A 586 SHEET 4 AA510 ILE A 675 THR A 680 1 O GLU A 678 N ILE A 645 SHEET 5 AA510 ARG A 704 PHE A 710 1 O ASP A 708 N VAL A 679 SHEET 6 AA510 TYR A 727 ILE A 730 1 O LYS A 729 N LEU A 707 SHEET 7 AA510 ARG A 761 ALA A 764 1 O ILE A 763 N ILE A 730 SHEET 8 AA510 TYR A 783 ALA A 784 1 O TYR A 783 N ALA A 764 SHEET 9 AA510 PHE A 564 PRO A 573 -1 N VAL A 572 O ALA A 784 SHEET 10 AA510 LEU A 793 PRO A 794 -1 O LEU A 793 N ALA A 568 LINK OD1 ASP A 412 MG MG A 902 1555 1555 2.42 LINK O LEU A 413 MG MG A 902 1555 1555 2.36 LINK OD2 ASP A 455 MG MG A 902 1555 1555 2.06 LINK O3G GTP A 901 MG MG A 902 1555 1555 2.08 LINK O2B GTP A 901 MG MG A 902 1555 1555 2.54 LINK O1A GTP A 901 MG MG A 902 1555 1555 2.36 SITE 1 AC1 19 ASP A 412 LEU A 413 GLN A 415 PHE A 416 SITE 2 AC1 19 LYS A 417 ASN A 420 HIS A 425 GLY A 428 SITE 3 AC1 19 ASP A 429 ARG A 451 GLY A 454 ASP A 455 SITE 4 AC1 19 LYS A 525 ARG A 529 LEU A 601 MG A 902 SITE 5 AC1 19 HOH A1001 HOH A1016 HOH A1039 SITE 1 AC2 5 ASP A 412 LEU A 413 ASP A 455 LYS A 525 SITE 2 AC2 5 GTP A 901 CRYST1 134.729 134.729 209.953 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007422 0.004285 0.000000 0.00000 SCALE2 0.000000 0.008571 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004763 0.00000