HEADER TRANSCRIPTION 13-APR-17 5XGF TITLE THE FATTY ACID-RESPONSIVE FADR REPRESSOR OF VIBRIO ALGINOLYTICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FATTY ACID METABOLISM REGULATOR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GNTR FAMILY TRANSSCRIPTIONAL REGULATOR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO ALGINOLYTICUS E0666; SOURCE 3 ORGANISM_TAXID: 1231058; SOURCE 4 STRAIN: E0666; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS FATTY ACID-RESPONSIVE FADR REPRESSOR, PALMITOYL1-COA ESTER BINDING, KEYWDS 2 DNA BINDING, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.LIN,D.F.LI,Y.J.FENG REVDAT 2 22-NOV-23 5XGF 1 LINK REVDAT 1 31-MAY-17 5XGF 0 SPRSDE 31-MAY-17 5XGF 5DV1 JRNL AUTH Y.J.FENG,Y.LIN,D.F.LI,H.M.ZHANG,R.S.GAO,L.J.BI,S.H.WANG JRNL TITL SNAPSHORT OF VIBRIO FADR-LIGAND COMPLEX STRUCTURE REVEALS A JRNL TITL 2 NEW MECHANISM FOR BACTERIAL FATTY ACID SENSING JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 17995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1800 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 18.4745 - 5.4809 0.96 1338 150 0.2152 0.2686 REMARK 3 2 5.4809 - 4.3693 0.94 1225 135 0.1989 0.2400 REMARK 3 3 4.3693 - 3.8226 0.99 1268 142 0.1988 0.2144 REMARK 3 4 3.8226 - 3.4756 0.98 1242 137 0.2008 0.2760 REMARK 3 5 3.4756 - 3.2279 0.99 1256 140 0.2223 0.2274 REMARK 3 6 3.2279 - 3.0385 1.00 1241 138 0.2250 0.2858 REMARK 3 7 3.0385 - 2.8869 1.00 1260 140 0.2322 0.2730 REMARK 3 8 2.8869 - 2.7617 1.00 1245 138 0.2316 0.2345 REMARK 3 9 2.7617 - 2.6557 1.00 1240 138 0.2384 0.2463 REMARK 3 10 2.6557 - 2.5643 1.00 1241 137 0.2445 0.3117 REMARK 3 11 2.5643 - 2.4843 1.00 1241 139 0.2472 0.2730 REMARK 3 12 2.4843 - 2.4134 0.99 1237 138 0.2478 0.2744 REMARK 3 13 2.4134 - 2.3500 0.95 1161 128 0.2694 0.3127 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2247 REMARK 3 ANGLE : 0.663 3037 REMARK 3 CHIRALITY : 0.041 331 REMARK 3 PLANARITY : 0.004 393 REMARK 3 DIHEDRAL : 7.405 1358 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2647 15.7682 6.4559 REMARK 3 T TENSOR REMARK 3 T11: 2.3039 T22: 1.2153 REMARK 3 T33: 1.8948 T12: -0.7648 REMARK 3 T13: -0.6526 T23: 0.1899 REMARK 3 L TENSOR REMARK 3 L11: 0.1207 L22: 0.7769 REMARK 3 L33: 3.0798 L12: -0.2520 REMARK 3 L13: 0.5775 L23: -1.4978 REMARK 3 S TENSOR REMARK 3 S11: -0.8498 S12: 0.4915 S13: 1.9111 REMARK 3 S21: 0.2447 S22: -0.1376 S23: -0.6404 REMARK 3 S31: -2.0528 S32: 1.6898 S33: 0.9031 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7994 6.8520 4.7404 REMARK 3 T TENSOR REMARK 3 T11: 0.8677 T22: 0.4540 REMARK 3 T33: 0.9820 T12: -0.1580 REMARK 3 T13: -0.2117 T23: -0.0312 REMARK 3 L TENSOR REMARK 3 L11: 4.2044 L22: 5.4938 REMARK 3 L33: 1.1501 L12: -1.6582 REMARK 3 L13: 1.2347 L23: -2.3684 REMARK 3 S TENSOR REMARK 3 S11: -0.7381 S12: -0.5863 S13: 1.6460 REMARK 3 S21: 0.8553 S22: 0.0443 S23: -0.1689 REMARK 3 S31: -1.9044 S32: 0.2799 S33: 0.1292 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 278 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9021 -19.6440 12.6713 REMARK 3 T TENSOR REMARK 3 T11: 0.1927 T22: 0.4214 REMARK 3 T33: 0.2401 T12: 0.0516 REMARK 3 T13: -0.0554 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 3.6800 L22: 2.5658 REMARK 3 L33: 4.9337 L12: -1.0005 REMARK 3 L13: 0.4341 L23: -1.3485 REMARK 3 S TENSOR REMARK 3 S11: -0.0652 S12: -0.4150 S13: 0.0650 REMARK 3 S21: 0.2246 S22: 0.1190 S23: -0.2440 REMARK 3 S31: 0.0704 S32: 0.7097 S33: -0.0757 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XGF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-APR-17. REMARK 100 THE DEPOSITION ID IS D_1300003440. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18014 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 18.474 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : 0.07100 REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1E2X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM CALCIUM ACETATE, 100MM SODIUM REMARK 280 CACODYLATE PH 6.5, 7% PEG 8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.20500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 108.30750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.10250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 108.30750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.10250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.20500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 ILE A 3 REMARK 465 LYS A 4 REMARK 465 ALA A 5 REMARK 465 LYS A 6 REMARK 465 SER A 7 REMARK 465 SER A 279 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 456 O HOH A 484 1.99 REMARK 500 OE2 GLU A 76 O HOH A 401 2.07 REMARK 500 O HOH A 417 O HOH A 457 2.08 REMARK 500 O HOH A 432 O HOH A 443 2.09 REMARK 500 OE1 GLN A 199 O HOH A 402 2.14 REMARK 500 O HOH A 500 O HOH A 511 2.15 REMARK 500 O HOH A 485 O HOH A 496 2.16 REMARK 500 OE1 GLN A 173 O HOH A 403 2.17 REMARK 500 O HOH A 437 O HOH A 474 2.18 REMARK 500 O HOH A 401 O HOH A 451 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 448 O HOH A 451 7555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 32 -176.05 -68.06 REMARK 500 ASP A 90 79.62 61.49 REMARK 500 LYS A 162 94.27 -65.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 301 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 100 OD1 REMARK 620 2 GLY A 197 O 39.4 REMARK 620 3 HOH A 412 O 71.4 86.8 REMARK 620 4 HOH A 434 O 77.0 115.2 81.8 REMARK 620 5 HOH A 473 O 167.5 152.8 102.4 91.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 301 DBREF 5XGF A -20 279 PDB 5XGF 5XGF -20 279 SEQRES 1 A 300 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 300 LEU VAL PRO ARG GLY SER HIS MET MET VAL ILE LYS ALA SEQRES 3 A 300 LYS SER PRO ALA GLY PHE ALA GLU LYS TYR ILE ILE GLU SEQRES 4 A 300 SER ILE TRP ASN GLY ARG PHE PRO PRO GLY SER ILE LEU SEQRES 5 A 300 PRO ALA GLU ARG GLU LEU SER GLU LEU ILE GLY VAL THR SEQRES 6 A 300 ARG THR THR LEU ARG GLU VAL LEU GLN ARG LEU ALA ARG SEQRES 7 A 300 ASP GLY TRP LEU THR ILE GLN HIS GLY LYS PRO THR LYS SEQRES 8 A 300 VAL ASN GLN PHE MET GLU THR SER GLY LEU HIS ILE LEU SEQRES 9 A 300 ASP THR LEU MET THR LEU ASP VAL ASP ASN ALA THR ASN SEQRES 10 A 300 ILE VAL GLU ASP LEU LEU ALA ALA ARG THR ASN ILE SER SEQRES 11 A 300 PRO ILE PHE MET ARG TYR ALA PHE LYS ALA ASN LYS GLU SEQRES 12 A 300 ASN SER GLU ARG THR ILE LYS ASN VAL ILE GLU SER CYS SEQRES 13 A 300 GLU ALA LEU MET ASN ALA ALA SER TRP ASP ASP PHE ILE SEQRES 14 A 300 ALA SER SER PRO TYR ALA GLU LYS VAL LEU GLN ASN VAL SEQRES 15 A 300 LYS GLU ASP ASN GLU LYS ASP GLU ALA LYS ARG GLN GLU SEQRES 16 A 300 ILE LEU ILE ALA LYS THR PHE ASN PHE TYR ASP TYR MET SEQRES 17 A 300 LEU PHE GLN ARG LEU ALA PHE HIS SER GLY ASN GLN ILE SEQRES 18 A 300 TYR GLY LEU ILE PHE ASN GLY LEU LYS LYS LEU TYR ASP SEQRES 19 A 300 ARG VAL GLY SER TYR TYR PHE SER ASN PRO ALA SER ARG SEQRES 20 A 300 GLU LEU ALA LEU LYS PHE TYR HIS GLN LEU LEU GLU THR SEQRES 21 A 300 CYS GLU SER GLY GLN ARG GLU GLN LEU PRO VAL VAL ILE SEQRES 22 A 300 ARG HIS TYR GLY MET GLU SER ALA LEU ILE TRP ASN GLU SEQRES 23 A 300 MET LYS LYS GLN LEU PRO THR ASN PHE THR GLU ASP ASP SEQRES 24 A 300 SER HET NI A 301 1 HETNAM NI NICKEL (II) ION FORMUL 2 NI NI 2+ FORMUL 3 HOH *111(H2 O) HELIX 1 AA1 PRO A 8 ASN A 22 1 15 HELIX 2 AA2 ALA A 33 ILE A 41 1 9 HELIX 3 AA3 THR A 44 GLN A 53 1 10 HELIX 4 AA4 GLN A 53 ASP A 58 1 6 HELIX 5 AA5 HIS A 81 LEU A 89 1 9 HELIX 6 AA6 ASP A 90 ASP A 92 5 3 HELIX 7 AA7 ASN A 93 ASN A 120 1 28 HELIX 8 AA8 ASN A 120 ALA A 141 1 22 HELIX 9 AA9 SER A 143 SER A 150 1 8 HELIX 10 AB1 TYR A 153 VAL A 161 1 9 HELIX 11 AB2 ASP A 168 SER A 196 1 29 HELIX 12 AB3 ASN A 198 PHE A 220 1 23 HELIX 13 AB4 ASN A 222 GLY A 243 1 22 HELIX 14 AB5 GLU A 246 LYS A 267 1 22 HELIX 15 AB6 LYS A 268 LEU A 270 5 3 HELIX 16 AB7 PRO A 271 THR A 275 5 5 SHEET 1 AA1 2 LEU A 61 ILE A 63 0 SHEET 2 AA1 2 THR A 69 VAL A 71 -1 O LYS A 70 N THR A 62 LINK OD1 ASP A 100 NI NI A 301 1555 1555 2.40 LINK O GLY A 197 NI NI A 301 1555 7555 2.38 LINK NI NI A 301 O HOH A 412 1555 1555 2.28 LINK NI NI A 301 O HOH A 434 1555 1555 2.50 LINK NI NI A 301 O HOH A 473 1555 7555 2.29 SITE 1 AC1 5 ASP A 100 GLY A 197 HOH A 412 HOH A 434 SITE 2 AC1 5 HOH A 473 CRYST1 76.000 76.000 144.410 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013158 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013158 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006925 0.00000