HEADER HYDROLASE 19-APR-17 5XH8 TITLE ASPERGILLUS KAWACHII BETA-FRUCTOFURANOSIDASE COMPLEXED WITH GLYCEROL COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXTRACELLULAR INVERTASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 25-628; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS KAWACHII (STRAIN NBRC 4308); SOURCE 3 ORGANISM_COMMON: WHITE KOJI MOLD; SOURCE 4 ORGANISM_TAXID: 1033177; SOURCE 5 STRAIN: NBRC 4308; SOURCE 6 GENE: AKAW_06215; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FRUCTOOLIGOSACCHARIDES, 1-KESTOSE, GH32, BETA-PROPELLER, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.NAGAYA,T.TONOZUKA REVDAT 4 22-NOV-23 5XH8 1 REMARK REVDAT 3 16-AUG-17 5XH8 1 JRNL REVDAT 2 02-AUG-17 5XH8 1 JRNL REVDAT 1 19-JUL-17 5XH8 0 JRNL AUTH M.NAGAYA,M.KIMURA,Y.GOZU,S.SATO,K.HIRANO,T.TOCHIO, JRNL AUTH 2 A.NISHIKAWA,T.TONOZUKA JRNL TITL CRYSTAL STRUCTURE OF A BETA-FRUCTOFURANOSIDASE WITH HIGH JRNL TITL 2 TRANSFRUCTOSYLATION ACTIVITY FROM ASPERGILLUS KAWACHII JRNL REF BIOSCI. BIOTECHNOL. BIOCHEM. V. 81 1786 2017 JRNL REFN ISSN 1347-6947 JRNL PMID 28715279 JRNL DOI 10.1080/09168451.2017.1353405 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 58211 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2928 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4306 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 168 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4664 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 342 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.133 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4837 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4195 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6606 ; 1.426 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9748 ; 3.838 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 604 ; 7.207 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 219 ;35.764 ;24.201 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 678 ;12.130 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;18.392 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 722 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5483 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1034 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2421 ; 1.927 ; 3.303 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2418 ; 1.912 ; 3.301 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3022 ; 2.927 ; 4.940 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3023 ; 2.928 ; 4.941 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2416 ; 2.137 ; 3.428 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2417 ; 2.137 ; 3.429 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3585 ; 3.265 ; 5.070 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5474 ; 4.772 ;38.325 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5396 ; 4.657 ;38.109 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5XH8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-APR-17. REMARK 100 THE DEPOSITION ID IS D_1300003535. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : 1 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61305 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 47.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 53.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 11.10 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3LDK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 2.6 M SODIUM REMARK 280 FORMATE, PH 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.68100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 101.36200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 101.36200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 50.68100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 188.44540 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 101.36200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1133 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 52 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 589 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 589 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 66 -177.44 -171.88 REMARK 500 ALA A 97 -51.62 -137.44 REMARK 500 PHE A 192 78.36 -156.15 REMARK 500 ASN A 200 114.63 -160.36 REMARK 500 LYS A 225 -61.10 -126.16 REMARK 500 ALA A 263 41.08 -146.68 REMARK 500 ALA A 267 -151.56 66.23 REMARK 500 ASP A 279 -164.64 -121.31 REMARK 500 ASN A 322 48.23 -152.61 REMARK 500 ALA A 418 -162.85 -124.80 REMARK 500 LYS A 477 41.37 -90.66 REMARK 500 ASN A 571 -91.82 63.97 REMARK 500 ARG A 581 12.11 -144.72 REMARK 500 LEU A 619 -133.60 52.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1142 DISTANCE = 5.90 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 701 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 310 O REMARK 620 2 GLY A 338 O 158.3 REMARK 620 3 PHE A 339 O 96.5 77.9 REMARK 620 4 SER A 341 O 104.1 97.6 102.1 REMARK 620 5 HOH A1004 O 95.3 81.8 152.1 99.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 709 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5XH9 RELATED DB: PDB REMARK 900 RELATED ID: 5XHA RELATED DB: PDB DBREF 5XH8 A 25 628 UNP G7XM46 G7XM46_ASPKW 25 628 SEQADV 5XH8 MET A 24 UNP G7XM46 EXPRESSION TAG SEQRES 1 A 605 MET SER VAL VAL ILE ASP TYR ASN VAL ALA PRO PRO ASN SEQRES 2 A 605 LEU SER THR LEU PRO ASN GLY SER LEU PHE GLU THR TRP SEQRES 3 A 605 ARG PRO ARG ALA HIS VAL LEU PRO PRO ASN GLY GLN ILE SEQRES 4 A 605 GLY ASP PRO CYS LEU HIS TYR THR ASP PRO ALA THR GLY SEQRES 5 A 605 LEU PHE HIS VAL GLY PHE LEU HIS ASP GLY SER GLY ILE SEQRES 6 A 605 SER SER ALA THR THR ASP ASP LEU ALA THR TYR GLN ASP SEQRES 7 A 605 LEU ASN GLN GLY ASN GLN VAL ILE VAL PRO GLY GLY ILE SEQRES 8 A 605 ASN ASP PRO VAL ALA VAL PHE ASP GLY SER VAL ILE PRO SEQRES 9 A 605 ASN GLY ILE ASN GLY LEU PRO THR LEU LEU TYR THR SER SEQRES 10 A 605 VAL SER TYR LEU PRO ILE HIS TRP SER ILE PRO TYR THR SEQRES 11 A 605 ARG GLY SER GLU THR GLN SER LEU ALA VAL SER SER ASP SEQRES 12 A 605 GLY GLY SER ASN PHE THR LYS LEU ASP GLN GLY PRO VAL SEQRES 13 A 605 ILE PRO GLY PRO PRO PHE ALA TYR ASN VAL THR ALA PHE SEQRES 14 A 605 ARG ASP PRO TYR VAL PHE GLN ASN PRO THR LEU ASP SER SEQRES 15 A 605 LEU LEU HIS SER LYS ASN ASN THR TRP TYR THR VAL ILE SEQRES 16 A 605 SER GLY GLY LEU HIS GLU LYS GLY PRO ALA GLN PHE LEU SEQRES 17 A 605 TYR ARG GLN TYR ASP SER ASP PHE GLN TYR TRP GLU TYR SEQRES 18 A 605 LEU GLY GLN TRP TRP HIS GLU PRO THR ASN SER THR TRP SEQRES 19 A 605 GLY ASN GLY THR TRP ALA GLY ARG TRP ALA PHE ASN PHE SEQRES 20 A 605 GLU THR GLY ASN VAL PHE SER LEU ASP GLU TYR GLY TYR SEQRES 21 A 605 ASN PRO HIS GLY GLN ILE PHE THR THR ILE GLY THR GLU SEQRES 22 A 605 GLY SER ASP LEU PRO VAL VAL PRO GLN LEU THR SER ILE SEQRES 23 A 605 HIS ASP MET LEU TRP VAL SER GLY THR VAL SER ARG ASN SEQRES 24 A 605 GLY SER VAL SER PHE ASN PRO ASN MET ALA GLY PHE LEU SEQRES 25 A 605 ASP TRP GLY PHE SER SER TYR ALA ALA ALA GLY LYS VAL SEQRES 26 A 605 LEU PRO SER THR SER LEU PRO SER THR LYS SER GLY ALA SEQRES 27 A 605 PRO ASP ARG PHE ILE SER TYR VAL TRP LEU SER GLY ASP SEQRES 28 A 605 LEU PHE GLU GLN ALA GLU GLY PHE PRO THR ASN GLN GLN SEQRES 29 A 605 ASN TRP THR GLY THR LEU LEU LEU PRO ARG GLU LEU ARG SEQRES 30 A 605 VAL LEU TYR ILE PRO ASN VAL VAL ASP ASN ALA LEU ALA SEQRES 31 A 605 ARG GLU SER GLY ALA SER TRP GLN VAL VAL SER SER ASP SEQRES 32 A 605 GLY SER ALA GLY THR VAL GLU LEU GLN THR LEU GLY ILE SEQRES 33 A 605 SER ILE ALA ARG GLU THR LYS ALA ALA LEU LEU SER GLY SEQRES 34 A 605 THR SER PHE THR GLU SER GLY ARG THR LEU ASN SER SER SEQRES 35 A 605 GLY VAL VAL PRO PHE LYS ARG SER PRO SER GLU LYS PHE SEQRES 36 A 605 PHE VAL LEU SER ALA GLN LEU SER PHE PRO ALA SER ALA SEQRES 37 A 605 ARG GLY SER GLY LEU LYS SER GLY PHE GLN ILE LEU SER SEQRES 38 A 605 SER GLU HIS GLU SER THR THR VAL TYR TYR GLN PHE SER SEQRES 39 A 605 ASN GLU SER ILE ILE VAL ASP ARG SER ASN THR SER ALA SEQRES 40 A 605 ALA ALA ARG THR THR ASP GLY ILE ASP SER SER ALA GLU SEQRES 41 A 605 ALA GLY LYS LEU ARG LEU PHE ASP VAL LEU ASN GLY GLY SEQRES 42 A 605 GLU GLN ALA ILE GLU THR LEU ASP LEU THR LEU VAL VAL SEQRES 43 A 605 ASP ASN SER VAL LEU GLU VAL TYR ALA ASN GLY ARG PHE SEQRES 44 A 605 ALA LEU SER THR TRP VAL ARG SER TRP TYR ALA ASN SER SEQRES 45 A 605 THR ASN ILE SER PHE PHE HIS ASN GLY VAL GLY GLY VAL SEQRES 46 A 605 ALA PHE SER LYS VAL THR VAL SER GLU GLY LEU TYR ASP SEQRES 47 A 605 ALA TRP PRO ASP ARG GLN TYR HET NA A 701 1 HET GOL A 702 6 HET GOL A 703 6 HET GOL A 704 6 HET GOL A 705 6 HET GOL A 706 6 HET GOL A 707 6 HET ACT A 708 4 HET ACT A 709 4 HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NA NA 1+ FORMUL 3 GOL 6(C3 H8 O3) FORMUL 9 ACT 2(C2 H3 O2 1-) FORMUL 11 HOH *342(H2 O) HELIX 1 AA1 ASN A 36 LEU A 40 5 5 HELIX 2 AA2 ASN A 103 ASN A 106 5 4 HELIX 3 AA3 GLY A 129 LEU A 133 5 5 HELIX 4 AA4 ASN A 200 HIS A 208 1 9 HELIX 5 AA5 SER A 353 GLY A 360 1 8 HELIX 6 AA6 PRO A 383 ASN A 388 1 6 HELIX 7 AA7 ASN A 410 GLU A 415 1 6 HELIX 8 AA8 ALA A 442 LEU A 450 1 9 HELIX 9 AA9 PRO A 488 ARG A 492 5 5 HELIX 10 AB1 SER A 529 THR A 534 5 6 SHEET 1 AA1 5 GLN A 100 ASP A 101 0 SHEET 2 AA1 5 ILE A 88 THR A 93 -1 N THR A 92 O GLN A 100 SHEET 3 AA1 5 PHE A 77 HIS A 83 -1 N VAL A 79 O ALA A 91 SHEET 4 AA1 5 GLY A 60 THR A 70 -1 N TYR A 69 O HIS A 78 SHEET 5 AA1 5 TRP A 389 THR A 390 1 O THR A 390 N ILE A 62 SHEET 1 AA2 4 ALA A 119 ILE A 126 0 SHEET 2 AA2 4 THR A 135 VAL A 141 -1 O THR A 139 N PHE A 121 SHEET 3 AA2 4 GLU A 157 VAL A 163 -1 O ALA A 162 N LEU A 136 SHEET 4 AA2 4 THR A 172 LYS A 173 -1 O THR A 172 N VAL A 163 SHEET 1 AA3 4 VAL A 189 GLN A 199 0 SHEET 2 AA3 4 TRP A 214 LEU A 222 -1 O TYR A 215 N PHE A 198 SHEET 3 AA3 4 GLY A 226 GLN A 234 -1 O PHE A 230 N ILE A 218 SHEET 4 AA3 4 TRP A 242 HIS A 250 -1 O LEU A 245 N LEU A 231 SHEET 1 AA4 4 PHE A 270 LEU A 278 0 SHEET 2 AA4 4 GLN A 288 GLY A 297 -1 O PHE A 290 N PHE A 276 SHEET 3 AA4 4 ILE A 309 ARG A 321 -1 O ILE A 309 N GLY A 297 SHEET 4 AA4 4 VAL A 325 ASP A 336 -1 O ASN A 328 N THR A 318 SHEET 1 AA5 3 SER A 341 LEU A 349 0 SHEET 2 AA5 3 ARG A 364 LEU A 371 -1 O ARG A 364 N LEU A 349 SHEET 3 AA5 3 THR A 392 LEU A 393 -1 O THR A 392 N LEU A 371 SHEET 1 AA6 5 SER A 341 LEU A 349 0 SHEET 2 AA6 5 ARG A 364 LEU A 371 -1 O ARG A 364 N LEU A 349 SHEET 3 AA6 5 ARG A 397 VAL A 408 -1 O ARG A 397 N SER A 367 SHEET 4 AA6 5 THR A 431 ILE A 441 -1 O GLY A 438 N ARG A 400 SHEET 5 AA6 5 GLN A 421 ASP A 426 -1 N VAL A 423 O GLU A 433 SHEET 1 AA7 5 THR A 453 GLU A 457 0 SHEET 2 AA7 5 VAL A 613 GLU A 617 -1 O VAL A 615 N PHE A 455 SHEET 3 AA7 5 PHE A 478 SER A 486 -1 N VAL A 480 O SER A 616 SHEET 4 AA7 5 VAL A 608 PHE A 610 -1 O ALA A 609 N SER A 486 SHEET 5 AA7 5 ARG A 460 LEU A 462 -1 N ARG A 460 O PHE A 610 SHEET 1 AA8 6 THR A 453 GLU A 457 0 SHEET 2 AA8 6 VAL A 613 GLU A 617 -1 O VAL A 615 N PHE A 455 SHEET 3 AA8 6 PHE A 478 SER A 486 -1 N VAL A 480 O SER A 616 SHEET 4 AA8 6 LEU A 563 ASP A 570 -1 O LEU A 567 N LEU A 481 SHEET 5 AA8 6 VAL A 573 ALA A 578 -1 O TYR A 577 N THR A 566 SHEET 6 AA8 6 PHE A 582 TRP A 587 -1 O LEU A 584 N VAL A 576 SHEET 1 AA9 6 SER A 465 PRO A 469 0 SHEET 2 AA9 6 ASN A 597 ASN A 603 -1 O HIS A 602 N GLY A 466 SHEET 3 AA9 6 LYS A 497 SER A 504 -1 N GLN A 501 O SER A 599 SHEET 4 AA9 6 THR A 510 GLN A 515 -1 O THR A 510 N ILE A 502 SHEET 5 AA9 6 SER A 520 ASP A 524 -1 O ASP A 524 N THR A 511 SHEET 6 AA9 6 GLU A 543 LYS A 546 -1 O GLU A 543 N VAL A 523 SHEET 1 AB1 2 ASP A 551 ASN A 554 0 SHEET 2 AB1 2 GLU A 557 ILE A 560 -1 O ALA A 559 N VAL A 552 LINK O HIS A 310 NA NA A 701 1555 1555 2.26 LINK O GLY A 338 NA NA A 701 1555 1555 2.37 LINK O PHE A 339 NA NA A 701 1555 1555 2.85 LINK O SER A 341 NA NA A 701 1555 1555 2.38 LINK NA NA A 701 O HOH A1004 1555 1555 2.42 CISPEP 1 LEU A 144 PRO A 145 0 4.15 CISPEP 2 LEU A 300 PRO A 301 0 -7.90 SITE 1 AC1 5 HIS A 310 GLY A 338 PHE A 339 SER A 341 SITE 2 AC1 5 HOH A1004 SITE 1 AC2 8 ASP A 64 LEU A 82 PHE A 121 ASP A 122 SITE 2 AC2 8 ASP A 194 GOL A 703 HOH A 822 HOH A 932 SITE 1 AC3 8 PHE A 121 ILE A 146 HIS A 147 ARG A 193 SITE 2 AC3 8 GOL A 702 HOH A 816 HOH A 821 HOH A 935 SITE 1 AC4 8 GLY A 113 ILE A 114 ASN A 115 TYR A 143 SITE 2 AC4 8 ASP A 175 HOH A 818 HOH A 905 HOH A1051 SITE 1 AC5 5 TRP A 148 LEU A 222 HIS A 223 GLU A 224 SITE 2 AC5 5 THR A 253 SITE 1 AC6 6 TYR A 30 THR A 48 LYS A 477 SER A 590 SITE 2 AC6 6 TRP A 591 HOH A 899 SITE 1 AC7 4 THR A 256 TRP A 257 GLY A 258 HOH A1037 SITE 1 AC8 5 PRO A 58 ASN A 59 HIS A 83 GLN A 104 SITE 2 AC8 5 ASN A 106 SITE 1 AC9 5 PHE A 334 TRP A 337 GLY A 338 HOH A 805 SITE 2 AC9 5 HOH A1004 CRYST1 108.799 108.799 152.043 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009191 0.005307 0.000000 0.00000 SCALE2 0.000000 0.010613 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006577 0.00000