HEADER SIGNALING PROTEIN/MEMBRANE PROTEIN 01-MAY-17 5XJG TITLE CRYSTAL STRUCTURE OF VAC8P BOUND TO NVJ1P COMPND MOL_ID: 1; COMPND 2 MOLECULE: VACUOLAR PROTEIN 8; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 10-515; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NUCLEUS-VACUOLE JUNCTION PROTEIN 1; COMPND 8 CHAIN: B, D; COMPND 9 FRAGMENT: UNP RESIDUES 229-321; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: VAC8, YEB3, YEL013W; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 13 S288C); SOURCE 14 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 15 ORGANISM_TAXID: 559292; SOURCE 16 STRAIN: ATCC 204508 / S288C; SOURCE 17 GENE: NVJ1, VAB36, YHR195W; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 20 EXPRESSION_SYSTEM_STRAIN: K-12 KEYWDS VAC8P, NVJ1P, MEMBRANE CONTACT SITE, NUCLEUS-VACUOLE JUNCTION, KEYWDS 2 SIGNALING PROTEIN-MEMBRANE PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.JEONG,J.PARK,Y.JUN,C.LEE REVDAT 3 27-MAR-24 5XJG 1 HETSYN REVDAT 2 06-DEC-17 5XJG 1 JRNL REVDAT 1 07-JUN-17 5XJG 0 JRNL AUTH H.JEONG,J.PARK,H.I.KIM,M.LEE,Y.J.KO,S.LEE,Y.JUN,C.LEE JRNL TITL MECHANISTIC INSIGHT INTO THE NUCLEUS-VACUOLE JUNCTION BASED JRNL TITL 2 ON THE VAC8P-NVJ1P CRYSTAL STRUCTURE. JRNL REF PROC. NATL. ACAD. SCI. V. 114 E4539 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28533415 JRNL DOI 10.1073/PNAS.1701030114 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 57022 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.540 REMARK 3 FREE R VALUE TEST SET COUNT : 2016 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5970 - 5.7711 0.99 3999 146 0.1875 0.2357 REMARK 3 2 5.7711 - 4.5862 1.00 3976 141 0.1973 0.2029 REMARK 3 3 4.5862 - 4.0080 1.00 3923 146 0.1785 0.2046 REMARK 3 4 4.0080 - 3.6423 1.00 3931 146 0.1825 0.2200 REMARK 3 5 3.6423 - 3.3816 1.00 3917 142 0.2070 0.2406 REMARK 3 6 3.3816 - 3.1825 1.00 3968 149 0.2182 0.2389 REMARK 3 7 3.1825 - 3.0233 1.00 3921 142 0.2007 0.2382 REMARK 3 8 3.0233 - 2.8918 1.00 3909 145 0.1917 0.2240 REMARK 3 9 2.8918 - 2.7806 1.00 3933 146 0.1822 0.2214 REMARK 3 10 2.7806 - 2.6847 1.00 3926 145 0.1743 0.2070 REMARK 3 11 2.6847 - 2.6008 1.00 3910 146 0.1774 0.2224 REMARK 3 12 2.6008 - 2.5265 1.00 3903 139 0.1760 0.1972 REMARK 3 13 2.5265 - 2.4600 1.00 3870 141 0.1749 0.2392 REMARK 3 14 2.4600 - 2.4000 1.00 3920 142 0.1734 0.2276 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 8132 REMARK 3 ANGLE : 0.908 11023 REMARK 3 CHIRALITY : 0.032 1332 REMARK 3 PLANARITY : 0.004 1420 REMARK 3 DIHEDRAL : 14.011 3044 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XJG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1300003622. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57806 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG400, BTP, T-BUTANOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 57.81500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 ASP A 13 REMARK 465 GLU A 14 REMARK 465 ALA A 15 REMARK 465 SER A 16 REMARK 465 VAL A 17 REMARK 465 SER A 18 REMARK 465 LEU A 35 REMARK 465 GLU A 36 REMARK 465 ASP A 37 REMARK 465 LYS A 38 REMARK 465 ASP A 39 REMARK 465 VAL A 513 REMARK 465 ARG A 514 REMARK 465 LYS A 515 REMARK 465 ASN B 229 REMARK 465 ARG B 230 REMARK 465 GLU B 231 REMARK 465 LYS B 232 REMARK 465 ASP B 233 REMARK 465 CYS B 234 REMARK 465 SER B 235 REMARK 465 SER B 236 REMARK 465 SER B 237 REMARK 465 SER B 238 REMARK 465 GLU B 239 REMARK 465 VAL B 240 REMARK 465 GLU B 241 REMARK 465 SER B 242 REMARK 465 GLN B 243 REMARK 465 SER B 244 REMARK 465 LYS B 245 REMARK 465 CYS B 246 REMARK 465 ARG B 247 REMARK 465 LYS B 248 REMARK 465 GLU B 249 REMARK 465 SER B 250 REMARK 465 THR B 251 REMARK 465 ALA B 252 REMARK 465 GLU B 253 REMARK 465 PRO B 254 REMARK 465 ASP B 255 REMARK 465 SER B 256 REMARK 465 LEU B 257 REMARK 465 SER B 258 REMARK 465 ARG B 259 REMARK 465 ASP B 260 REMARK 465 THR B 261 REMARK 465 ARG B 262 REMARK 465 THR B 263 REMARK 465 THR B 264 REMARK 465 SER B 265 REMARK 465 SER B 266 REMARK 465 LEU B 267 REMARK 465 LYS B 268 REMARK 465 SER B 269 REMARK 465 SER B 270 REMARK 465 THR B 271 REMARK 465 SER B 272 REMARK 465 PHE B 273 REMARK 465 PRO B 274 REMARK 465 ILE B 275 REMARK 465 SER B 276 REMARK 465 PHE B 277 REMARK 465 LYS B 278 REMARK 465 GLY B 279 REMARK 465 SER B 280 REMARK 465 ILE B 281 REMARK 465 ASP B 282 REMARK 465 LEU B 283 REMARK 465 LYS B 284 REMARK 465 SER B 285 REMARK 465 LEU B 286 REMARK 465 ASN B 287 REMARK 465 GLN B 288 REMARK 465 PRO B 289 REMARK 465 SER B 290 REMARK 465 SER B 291 REMARK 465 ASP C 10 REMARK 465 SER C 11 REMARK 465 SER C 12 REMARK 465 ASP C 13 REMARK 465 GLU C 14 REMARK 465 ALA C 15 REMARK 465 SER C 16 REMARK 465 VAL C 17 REMARK 465 SER C 18 REMARK 465 LEU C 35 REMARK 465 GLU C 36 REMARK 465 ASP C 37 REMARK 465 LYS C 38 REMARK 465 ASP C 39 REMARK 465 VAL C 513 REMARK 465 ARG C 514 REMARK 465 LYS C 515 REMARK 465 ASN D 229 REMARK 465 ARG D 230 REMARK 465 GLU D 231 REMARK 465 LYS D 232 REMARK 465 ASP D 233 REMARK 465 CYS D 234 REMARK 465 SER D 235 REMARK 465 SER D 236 REMARK 465 SER D 237 REMARK 465 SER D 238 REMARK 465 GLU D 239 REMARK 465 VAL D 240 REMARK 465 GLU D 241 REMARK 465 SER D 242 REMARK 465 GLN D 243 REMARK 465 SER D 244 REMARK 465 LYS D 245 REMARK 465 CYS D 246 REMARK 465 ARG D 247 REMARK 465 LYS D 248 REMARK 465 GLU D 249 REMARK 465 SER D 250 REMARK 465 THR D 251 REMARK 465 ALA D 252 REMARK 465 GLU D 253 REMARK 465 PRO D 254 REMARK 465 ASP D 255 REMARK 465 SER D 256 REMARK 465 LEU D 257 REMARK 465 SER D 258 REMARK 465 ARG D 259 REMARK 465 ASP D 260 REMARK 465 THR D 261 REMARK 465 ARG D 262 REMARK 465 THR D 263 REMARK 465 THR D 264 REMARK 465 SER D 265 REMARK 465 SER D 266 REMARK 465 LEU D 267 REMARK 465 LYS D 268 REMARK 465 SER D 269 REMARK 465 SER D 270 REMARK 465 THR D 271 REMARK 465 SER D 272 REMARK 465 PHE D 273 REMARK 465 PRO D 274 REMARK 465 ILE D 275 REMARK 465 SER D 276 REMARK 465 PHE D 277 REMARK 465 LYS D 278 REMARK 465 GLY D 279 REMARK 465 SER D 280 REMARK 465 ILE D 281 REMARK 465 ASP D 282 REMARK 465 LEU D 283 REMARK 465 LYS D 284 REMARK 465 SER D 285 REMARK 465 LEU D 286 REMARK 465 ASN D 287 REMARK 465 GLN D 288 REMARK 465 PRO D 289 REMARK 465 SER D 290 REMARK 465 SER D 291 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 41 CD1 LEU C 41 2.09 REMARK 500 O VAL C 408 O HOH C 701 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 364 -156.97 -103.02 REMARK 500 ASP A 387 54.96 -145.23 REMARK 500 ASP C 138 58.09 -98.82 REMARK 500 SER C 364 -156.81 -97.67 REMARK 500 ASP C 387 63.21 -150.57 REMARK 500 GLU C 463 2.86 83.77 REMARK 500 LYS C 474 31.21 -97.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PE5 A 601 REMARK 610 PE5 C 601 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PE5 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue B3P A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PE5 C 601 DBREF 5XJG A 10 515 UNP P39968 VAC8_YEAST 10 515 DBREF 5XJG B 229 321 UNP P38881 NVJ1_YEAST 229 321 DBREF 5XJG C 10 515 UNP P39968 VAC8_YEAST 10 515 DBREF 5XJG D 229 321 UNP P38881 NVJ1_YEAST 229 321 SEQRES 1 A 506 ASP SER SER ASP GLU ALA SER VAL SER PRO ILE ALA ASP SEQRES 2 A 506 ASN GLU ARG GLU ALA VAL THR LEU LEU LEU GLY TYR LEU SEQRES 3 A 506 GLU ASP LYS ASP GLN LEU ASP PHE TYR SER GLY GLY PRO SEQRES 4 A 506 LEU LYS ALA LEU THR THR LEU VAL TYR SER ASP ASN LEU SEQRES 5 A 506 ASN LEU GLN ARG SER ALA ALA LEU ALA PHE ALA GLU ILE SEQRES 6 A 506 THR GLU LYS TYR VAL ARG GLN VAL SER ARG GLU VAL LEU SEQRES 7 A 506 GLU PRO ILE LEU ILE LEU LEU GLN SER GLN ASP PRO GLN SEQRES 8 A 506 ILE GLN VAL ALA ALA CYS ALA ALA LEU GLY ASN LEU ALA SEQRES 9 A 506 VAL ASN ASN GLU ASN LYS LEU LEU ILE VAL GLU MET GLY SEQRES 10 A 506 GLY LEU GLU PRO LEU ILE ASN GLN MET MET GLY ASP ASN SEQRES 11 A 506 VAL GLU VAL GLN CYS ASN ALA VAL GLY CYS ILE THR ASN SEQRES 12 A 506 LEU ALA THR ARG ASP ASP ASN LYS HIS LYS ILE ALA THR SEQRES 13 A 506 SER GLY ALA LEU ILE PRO LEU THR LYS LEU ALA LYS SER SEQRES 14 A 506 LYS HIS ILE ARG VAL GLN ARG ASN ALA THR GLY ALA LEU SEQRES 15 A 506 LEU ASN MET THR HIS SER GLU GLU ASN ARG LYS GLU LEU SEQRES 16 A 506 VAL ASN ALA GLY ALA VAL PRO VAL LEU VAL SER LEU LEU SEQRES 17 A 506 SER SER THR ASP PRO ASP VAL GLN TYR TYR CYS THR THR SEQRES 18 A 506 ALA LEU SER ASN ILE ALA VAL ASP GLU ALA ASN ARG LYS SEQRES 19 A 506 LYS LEU ALA GLN THR GLU PRO ARG LEU VAL SER LYS LEU SEQRES 20 A 506 VAL SER LEU MET ASP SER PRO SER SER ARG VAL LYS CYS SEQRES 21 A 506 GLN ALA THR LEU ALA LEU ARG ASN LEU ALA SER ASP THR SEQRES 22 A 506 SER TYR GLN LEU GLU ILE VAL ARG ALA GLY GLY LEU PRO SEQRES 23 A 506 HIS LEU VAL LYS LEU ILE GLN SER ASP SER ILE PRO LEU SEQRES 24 A 506 VAL LEU ALA SER VAL ALA CYS ILE ARG ASN ILE SER ILE SEQRES 25 A 506 HIS PRO LEU ASN GLU GLY LEU ILE VAL ASP ALA GLY PHE SEQRES 26 A 506 LEU LYS PRO LEU VAL ARG LEU LEU ASP TYR LYS ASP SER SEQRES 27 A 506 GLU GLU ILE GLN CYS HIS ALA VAL SER THR LEU ARG ASN SEQRES 28 A 506 LEU ALA ALA SER SER GLU LYS ASN ARG LYS GLU PHE PHE SEQRES 29 A 506 GLU SER GLY ALA VAL GLU LYS CYS LYS GLU LEU ALA LEU SEQRES 30 A 506 ASP SER PRO VAL SER VAL GLN SER GLU ILE SER ALA CYS SEQRES 31 A 506 PHE ALA ILE LEU ALA LEU ALA ASP VAL SER LYS LEU ASP SEQRES 32 A 506 LEU LEU GLU ALA ASN ILE LEU ASP ALA LEU ILE PRO MET SEQRES 33 A 506 THR PHE SER GLN ASN GLN GLU VAL SER GLY ASN ALA ALA SEQRES 34 A 506 ALA ALA LEU ALA ASN LEU CYS SER ARG VAL ASN ASN TYR SEQRES 35 A 506 THR LYS ILE ILE GLU ALA TRP ASP ARG PRO ASN GLU GLY SEQRES 36 A 506 ILE ARG GLY PHE LEU ILE ARG PHE LEU LYS SER ASP TYR SEQRES 37 A 506 ALA THR PHE GLU HIS ILE ALA LEU TRP THR ILE LEU GLN SEQRES 38 A 506 LEU LEU GLU SER HIS ASN ASP LYS VAL GLU ASP LEU VAL SEQRES 39 A 506 LYS ASN ASP ASP ASP ILE ILE ASN GLY VAL ARG LYS SEQRES 1 B 93 ASN ARG GLU LYS ASP CYS SER SER SER SER GLU VAL GLU SEQRES 2 B 93 SER GLN SER LYS CYS ARG LYS GLU SER THR ALA GLU PRO SEQRES 3 B 93 ASP SER LEU SER ARG ASP THR ARG THR THR SER SER LEU SEQRES 4 B 93 LYS SER SER THR SER PHE PRO ILE SER PHE LYS GLY SER SEQRES 5 B 93 ILE ASP LEU LYS SER LEU ASN GLN PRO SER SER LEU LEU SEQRES 6 B 93 HIS ILE GLN VAL SER PRO THR LYS SER SER ASN LEU ASP SEQRES 7 B 93 ALA GLN VAL ASN THR GLU GLN ALA TYR SER GLN PRO PHE SEQRES 8 B 93 ARG TYR SEQRES 1 C 506 ASP SER SER ASP GLU ALA SER VAL SER PRO ILE ALA ASP SEQRES 2 C 506 ASN GLU ARG GLU ALA VAL THR LEU LEU LEU GLY TYR LEU SEQRES 3 C 506 GLU ASP LYS ASP GLN LEU ASP PHE TYR SER GLY GLY PRO SEQRES 4 C 506 LEU LYS ALA LEU THR THR LEU VAL TYR SER ASP ASN LEU SEQRES 5 C 506 ASN LEU GLN ARG SER ALA ALA LEU ALA PHE ALA GLU ILE SEQRES 6 C 506 THR GLU LYS TYR VAL ARG GLN VAL SER ARG GLU VAL LEU SEQRES 7 C 506 GLU PRO ILE LEU ILE LEU LEU GLN SER GLN ASP PRO GLN SEQRES 8 C 506 ILE GLN VAL ALA ALA CYS ALA ALA LEU GLY ASN LEU ALA SEQRES 9 C 506 VAL ASN ASN GLU ASN LYS LEU LEU ILE VAL GLU MET GLY SEQRES 10 C 506 GLY LEU GLU PRO LEU ILE ASN GLN MET MET GLY ASP ASN SEQRES 11 C 506 VAL GLU VAL GLN CYS ASN ALA VAL GLY CYS ILE THR ASN SEQRES 12 C 506 LEU ALA THR ARG ASP ASP ASN LYS HIS LYS ILE ALA THR SEQRES 13 C 506 SER GLY ALA LEU ILE PRO LEU THR LYS LEU ALA LYS SER SEQRES 14 C 506 LYS HIS ILE ARG VAL GLN ARG ASN ALA THR GLY ALA LEU SEQRES 15 C 506 LEU ASN MET THR HIS SER GLU GLU ASN ARG LYS GLU LEU SEQRES 16 C 506 VAL ASN ALA GLY ALA VAL PRO VAL LEU VAL SER LEU LEU SEQRES 17 C 506 SER SER THR ASP PRO ASP VAL GLN TYR TYR CYS THR THR SEQRES 18 C 506 ALA LEU SER ASN ILE ALA VAL ASP GLU ALA ASN ARG LYS SEQRES 19 C 506 LYS LEU ALA GLN THR GLU PRO ARG LEU VAL SER LYS LEU SEQRES 20 C 506 VAL SER LEU MET ASP SER PRO SER SER ARG VAL LYS CYS SEQRES 21 C 506 GLN ALA THR LEU ALA LEU ARG ASN LEU ALA SER ASP THR SEQRES 22 C 506 SER TYR GLN LEU GLU ILE VAL ARG ALA GLY GLY LEU PRO SEQRES 23 C 506 HIS LEU VAL LYS LEU ILE GLN SER ASP SER ILE PRO LEU SEQRES 24 C 506 VAL LEU ALA SER VAL ALA CYS ILE ARG ASN ILE SER ILE SEQRES 25 C 506 HIS PRO LEU ASN GLU GLY LEU ILE VAL ASP ALA GLY PHE SEQRES 26 C 506 LEU LYS PRO LEU VAL ARG LEU LEU ASP TYR LYS ASP SER SEQRES 27 C 506 GLU GLU ILE GLN CYS HIS ALA VAL SER THR LEU ARG ASN SEQRES 28 C 506 LEU ALA ALA SER SER GLU LYS ASN ARG LYS GLU PHE PHE SEQRES 29 C 506 GLU SER GLY ALA VAL GLU LYS CYS LYS GLU LEU ALA LEU SEQRES 30 C 506 ASP SER PRO VAL SER VAL GLN SER GLU ILE SER ALA CYS SEQRES 31 C 506 PHE ALA ILE LEU ALA LEU ALA ASP VAL SER LYS LEU ASP SEQRES 32 C 506 LEU LEU GLU ALA ASN ILE LEU ASP ALA LEU ILE PRO MET SEQRES 33 C 506 THR PHE SER GLN ASN GLN GLU VAL SER GLY ASN ALA ALA SEQRES 34 C 506 ALA ALA LEU ALA ASN LEU CYS SER ARG VAL ASN ASN TYR SEQRES 35 C 506 THR LYS ILE ILE GLU ALA TRP ASP ARG PRO ASN GLU GLY SEQRES 36 C 506 ILE ARG GLY PHE LEU ILE ARG PHE LEU LYS SER ASP TYR SEQRES 37 C 506 ALA THR PHE GLU HIS ILE ALA LEU TRP THR ILE LEU GLN SEQRES 38 C 506 LEU LEU GLU SER HIS ASN ASP LYS VAL GLU ASP LEU VAL SEQRES 39 C 506 LYS ASN ASP ASP ASP ILE ILE ASN GLY VAL ARG LYS SEQRES 1 D 93 ASN ARG GLU LYS ASP CYS SER SER SER SER GLU VAL GLU SEQRES 2 D 93 SER GLN SER LYS CYS ARG LYS GLU SER THR ALA GLU PRO SEQRES 3 D 93 ASP SER LEU SER ARG ASP THR ARG THR THR SER SER LEU SEQRES 4 D 93 LYS SER SER THR SER PHE PRO ILE SER PHE LYS GLY SER SEQRES 5 D 93 ILE ASP LEU LYS SER LEU ASN GLN PRO SER SER LEU LEU SEQRES 6 D 93 HIS ILE GLN VAL SER PRO THR LYS SER SER ASN LEU ASP SEQRES 7 D 93 ALA GLN VAL ASN THR GLU GLN ALA TYR SER GLN PRO PHE SEQRES 8 D 93 ARG TYR HET PE5 A 601 17 HET B3P A 602 19 HET PE5 C 601 17 HETNAM PE5 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL HETNAM B3P 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)- HETNAM 2 B3P PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN PE5 2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETSYN 2 PE5 ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL; POLYETHYLENE HETSYN 3 PE5 GLYCOL PEG400 FORMUL 5 PE5 2(C18 H38 O9) FORMUL 6 B3P C11 H26 N2 O6 FORMUL 8 HOH *181(H2 O) HELIX 1 AA1 ILE A 20 TYR A 34 1 15 HELIX 2 AA2 SER A 45 TYR A 57 1 13 HELIX 3 AA3 ASN A 60 TYR A 78 1 19 HELIX 4 AA4 SER A 83 LEU A 94 1 12 HELIX 5 AA5 ASP A 98 ALA A 113 1 16 HELIX 6 AA6 ASN A 115 MET A 125 1 11 HELIX 7 AA7 GLY A 127 MET A 136 1 10 HELIX 8 AA8 ASN A 139 ALA A 154 1 16 HELIX 9 AA9 ARG A 156 THR A 165 1 10 HELIX 10 AB1 ALA A 168 ALA A 176 1 9 HELIX 11 AB2 HIS A 180 MET A 194 1 15 HELIX 12 AB3 SER A 197 GLY A 208 1 12 HELIX 13 AB4 GLY A 208 LEU A 217 1 10 HELIX 14 AB5 ASP A 221 ALA A 236 1 16 HELIX 15 AB6 ASP A 238 GLU A 249 1 12 HELIX 16 AB7 ARG A 251 MET A 260 1 10 HELIX 17 AB8 SER A 264 ALA A 279 1 16 HELIX 18 AB9 ASP A 281 ALA A 291 1 11 HELIX 19 AC1 GLY A 292 GLN A 302 1 11 HELIX 20 AC2 SER A 305 SER A 320 1 16 HELIX 21 AC3 ILE A 321 LEU A 324 5 4 HELIX 22 AC4 ASN A 325 ALA A 332 1 8 HELIX 23 AC5 PHE A 334 LEU A 341 1 8 HELIX 24 AC6 LEU A 342 TYR A 344 5 3 HELIX 25 AC7 SER A 347 LEU A 361 1 15 HELIX 26 AC8 SER A 365 GLU A 374 1 10 HELIX 27 AC9 GLY A 376 ALA A 385 1 10 HELIX 28 AD1 PRO A 389 ALA A 404 1 16 HELIX 29 AD2 LEU A 405 VAL A 408 5 4 HELIX 30 AD3 SER A 409 ALA A 416 1 8 HELIX 31 AD4 ILE A 418 THR A 426 1 9 HELIX 32 AD5 ASN A 430 CYS A 445 1 16 HELIX 33 AD6 TYR A 451 ALA A 457 1 7 HELIX 34 AD7 GLU A 463 SER A 475 1 13 HELIX 35 AD8 TYR A 477 SER A 494 1 18 HELIX 36 AD9 ASN A 496 LYS A 504 1 9 HELIX 37 AE1 ASN A 505 GLY A 512 1 8 HELIX 38 AE2 ILE C 20 TYR C 34 1 15 HELIX 39 AE3 SER C 45 TYR C 57 1 13 HELIX 40 AE4 ASN C 60 TYR C 78 1 19 HELIX 41 AE5 SER C 83 LEU C 94 1 12 HELIX 42 AE6 ASP C 98 ALA C 113 1 16 HELIX 43 AE7 ASN C 115 MET C 125 1 11 HELIX 44 AE8 GLY C 127 MET C 136 1 10 HELIX 45 AE9 ASN C 139 ALA C 154 1 16 HELIX 46 AF1 ARG C 156 THR C 165 1 10 HELIX 47 AF2 ALA C 168 ALA C 176 1 9 HELIX 48 AF3 HIS C 180 MET C 194 1 15 HELIX 49 AF4 SER C 197 ALA C 207 1 11 HELIX 50 AF5 GLY C 208 LEU C 216 1 9 HELIX 51 AF6 LEU C 217 SER C 219 5 3 HELIX 52 AF7 ASP C 221 ALA C 236 1 16 HELIX 53 AF8 ASP C 238 GLU C 249 1 12 HELIX 54 AF9 ARG C 251 MET C 260 1 10 HELIX 55 AG1 SER C 264 ALA C 279 1 16 HELIX 56 AG2 ASP C 281 ALA C 291 1 11 HELIX 57 AG3 GLY C 292 ILE C 301 1 10 HELIX 58 AG4 SER C 305 SER C 320 1 16 HELIX 59 AG5 ILE C 321 LEU C 324 5 4 HELIX 60 AG6 ASN C 325 ALA C 332 1 8 HELIX 61 AG7 PHE C 334 LEU C 341 1 8 HELIX 62 AG8 LEU C 342 TYR C 344 5 3 HELIX 63 AG9 SER C 347 LEU C 361 1 15 HELIX 64 AH1 SER C 365 SER C 375 1 11 HELIX 65 AH2 GLY C 376 ALA C 385 1 10 HELIX 66 AH3 PRO C 389 ALA C 404 1 16 HELIX 67 AH4 LEU C 405 VAL C 408 5 4 HELIX 68 AH5 SER C 409 ALA C 416 1 8 HELIX 69 AH6 ILE C 418 THR C 426 1 9 HELIX 70 AH7 ASN C 430 CYS C 445 1 16 HELIX 71 AH8 TYR C 451 ALA C 457 1 7 HELIX 72 AH9 GLU C 463 LYS C 474 1 12 HELIX 73 AI1 TYR C 477 SER C 494 1 18 HELIX 74 AI2 ASN C 496 VAL C 503 1 8 HELIX 75 AI3 ASN C 505 ILE C 510 1 6 CISPEP 1 ARG A 460 PRO A 461 0 -1.62 CISPEP 2 ARG C 460 PRO C 461 0 -6.37 SITE 1 AC1 6 ASP A 261 GLY A 292 PRO A 295 HIS A 296 SITE 2 AC1 6 GLN C 97 ASP C 98 SITE 1 AC2 5 GLU A 198 ARG A 201 VAL A 237 ASP A 238 SITE 2 AC2 5 ASP B 306 SITE 1 AC3 7 ASN A 139 ARG B 320 GLN C 302 ARG C 340 SITE 2 AC3 7 ASP C 343 LYS C 380 GLU C 383 CRYST1 84.082 115.630 84.131 90.00 114.68 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011893 0.000000 0.005465 0.00000 SCALE2 0.000000 0.008648 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013081 0.00000