HEADER VIRAL PROTEIN 02-MAY-17 5XJK TITLE NMR STRUCTURE AND LOCALIZATION OF A LARGE FRAGMENT OF THE SARS-COV TITLE 2 FUSION PROTEIN: IMPLICATIONS IN VIRAL CELL FUSION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE PROTEIN S2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 758-821; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN SARS CORONAVIRUS; SOURCE 3 ORGANISM_COMMON: SARS-COV; SOURCE 4 ORGANISM_TAXID: 227859; SOURCE 5 GENE: S, 2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.BHATTACHARJYA,D.CHATTERJEE REVDAT 4 14-JUN-23 5XJK 1 REMARK REVDAT 3 13-DEC-17 5XJK 1 JRNL REVDAT 2 06-DEC-17 5XJK 1 JRNL REVDAT 1 06-SEP-17 5XJK 0 JRNL AUTH M.MAHAJAN,D.CHATTERJEE,K.BHUVANESWARI,S.PILLAY, JRNL AUTH 2 S.BHATTACHARJYA JRNL TITL NMR STRUCTURE AND LOCALIZATION OF A LARGE FRAGMENT OF THE JRNL TITL 2 SARS-COV FUSION PROTEIN: IMPLICATIONS IN VIRAL CELL FUSION. JRNL REF BIOCHIM. BIOPHYS. ACTA V.1860 407 2017 JRNL REFN ISSN 0006-3002 JRNL PMID 28988778 JRNL DOI 10.1016/J.BBAMEM.2017.10.002 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, SPARKY REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), GODDARD REMARK 3 (SPARKY) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XJK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1300003558. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.2 M [U-13C; U-15N] LARGE REMARK 210 FRAGMENT OF THE SARS-COV FUSION REMARK 210 PROTEIN, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCA; 3D HN(CO)CA; REMARK 210 HETRONUCLEAR NOE; 3D 1H-15N REMARK 210 NOESY; 3D 1H-15N TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 15 76.24 52.34 REMARK 500 1 LYS A 16 87.01 -58.81 REMARK 500 1 THR A 17 42.08 -140.27 REMARK 500 1 PRO A 18 80.45 -69.77 REMARK 500 1 LYS A 21 -63.26 -90.70 REMARK 500 1 PHE A 23 -50.11 -127.54 REMARK 500 1 SER A 34 68.65 -168.65 REMARK 500 1 LYS A 37 73.31 -176.96 REMARK 500 1 PRO A 38 82.65 -69.77 REMARK 500 1 SER A 42 46.90 -91.21 REMARK 500 2 ASN A 3 -51.49 -135.03 REMARK 500 2 LYS A 16 87.03 -58.85 REMARK 500 2 PHE A 23 31.38 -96.01 REMARK 500 2 SER A 42 93.82 -65.46 REMARK 500 2 LYS A 51 36.69 -95.62 REMARK 500 3 TYR A 15 72.23 -109.69 REMARK 500 3 THR A 19 74.58 -109.14 REMARK 500 3 SER A 34 69.15 -155.82 REMARK 500 3 PRO A 35 93.68 -69.70 REMARK 500 3 PRO A 38 -171.83 -69.74 REMARK 500 4 ARG A 2 -72.70 -106.29 REMARK 500 4 GLU A 6 41.65 39.41 REMARK 500 4 TYR A 15 40.64 -96.66 REMARK 500 4 LYS A 16 87.04 -58.80 REMARK 500 4 PRO A 18 82.20 -69.73 REMARK 500 4 SER A 34 73.17 -174.67 REMARK 500 4 LEU A 36 88.57 -170.91 REMARK 500 4 LYS A 37 72.15 -156.35 REMARK 500 4 PRO A 38 85.69 -69.82 REMARK 500 4 LYS A 51 37.58 -94.92 REMARK 500 5 GLU A 6 46.95 -91.13 REMARK 500 5 MET A 14 -74.46 -108.74 REMARK 500 5 LYS A 16 86.97 -58.81 REMARK 500 5 THR A 17 42.08 -142.41 REMARK 500 5 PRO A 18 -173.21 -69.75 REMARK 500 5 ASN A 27 59.19 -92.65 REMARK 500 5 LEU A 36 -66.96 -141.45 REMARK 500 6 LYS A 16 87.12 -58.56 REMARK 500 6 PRO A 33 -178.97 -69.71 REMARK 500 6 LYS A 37 70.80 -155.95 REMARK 500 6 PRO A 38 -171.47 -69.77 REMARK 500 6 LYS A 51 37.46 -95.08 REMARK 500 7 LYS A 16 87.02 -58.78 REMARK 500 7 PRO A 18 87.47 -69.81 REMARK 500 7 PHE A 23 31.98 -95.83 REMARK 500 7 SER A 34 70.92 54.33 REMARK 500 7 LYS A 37 72.87 -166.89 REMARK 500 7 VAL A 52 108.93 -57.09 REMARK 500 8 TYR A 15 -43.21 -138.35 REMARK 500 8 LYS A 16 87.01 -58.94 REMARK 500 REMARK 500 THIS ENTRY HAS 132 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36080 RELATED DB: BMRB DBREF 5XJK A 2 65 UNP P59594 SPIKE_CVHSA 758 821 SEQADV 5XJK PRO A 1 UNP P59594 EXPRESSION TAG SEQADV 5XJK SER A 34 UNP P59594 ASP 790 ENGINEERED MUTATION SEQRES 1 A 65 PRO ARG ASN THR ARG GLU VAL PHE ALA GLN VAL LYS GLN SEQRES 2 A 65 MET TYR LYS THR PRO THR LEU LYS TYR PHE GLY GLY PHE SEQRES 3 A 65 ASN PHE SER GLN ILE LEU PRO SER PRO LEU LYS PRO THR SEQRES 4 A 65 LYS ARG SER PHE ILE GLU ASP LEU LEU PHE ASN LYS VAL SEQRES 5 A 65 THR LEU ALA ASP ALA GLY PHE MET LYS GLN TYR GLY GLU HELIX 1 AA1 THR A 4 VAL A 11 1 8 HELIX 2 AA2 LYS A 12 MET A 14 5 3 HELIX 3 AA3 PHE A 43 LEU A 48 1 6 HELIX 4 AA4 PHE A 49 VAL A 52 5 4 HELIX 5 AA5 THR A 53 GLY A 58 1 6 HELIX 6 AA6 PHE A 59 GLY A 64 1 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1