HEADER SPLICING 04-MAY-17 5XJU TITLE CRYSTAL STRUCTURE OF THE GEMIN2-BINDING DOMAIN OF SMN, GEMIN2DN39 IN TITLE 2 COMPLEX WITH SMD1(1-82)/D2.R61A/F/E/G FROM HUMAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GEM-ASSOCIATED PROTEIN 2; COMPND 3 CHAIN: 2; COMPND 4 FRAGMENT: UNP RESIDUES 40-280; COMPND 5 SYNONYM: GEMIN-2,COMPONENT OF GEMS 2,SURVIVAL OF MOTOR NEURON COMPND 6 PROTEIN-INTERACTING PROTEIN 1,SMN-INTERACTING PROTEIN 1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1; COMPND 10 CHAIN: A; COMPND 11 FRAGMENT: UNP RESIDUES 1-82; COMPND 12 SYNONYM: SM-D1,SM-D AUTOANTIGEN,SNRNP CORE PROTEIN D1; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2; COMPND 16 CHAIN: B; COMPND 17 SYNONYM: SM-D2,SNRNP CORE PROTEIN D2; COMPND 18 ENGINEERED: YES; COMPND 19 MUTATION: YES; COMPND 20 MOL_ID: 4; COMPND 21 MOLECULE: SMALL NUCLEAR RIBONUCLEOPROTEIN E; COMPND 22 CHAIN: E; COMPND 23 SYNONYM: SNRNP-E,SM PROTEIN E,SME; COMPND 24 ENGINEERED: YES; COMPND 25 MOL_ID: 5; COMPND 26 MOLECULE: SMALL NUCLEAR RIBONUCLEOPROTEIN F; COMPND 27 CHAIN: F; COMPND 28 SYNONYM: SNRNP-F,SM PROTEIN F,SMF; COMPND 29 ENGINEERED: YES; COMPND 30 MOL_ID: 6; COMPND 31 MOLECULE: SMALL NUCLEAR RIBONUCLEOPROTEIN G; COMPND 32 CHAIN: G; COMPND 33 SYNONYM: SNRNP-G,SM PROTEIN G,SMG; COMPND 34 ENGINEERED: YES; COMPND 35 MOL_ID: 7; COMPND 36 MOLECULE: SURVIVAL MOTOR NEURON PROTEIN; COMPND 37 CHAIN: M; COMPND 38 FRAGMENT: UNP RESIDUES 26-62; COMPND 39 SYNONYM: COMPONENT OF GEMS 1,GEMIN-1; COMPND 40 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GEMIN2, SIP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: SNRPD1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: SNRPD2, SNRPD1; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 24 ORGANISM_COMMON: HUMAN; SOURCE 25 ORGANISM_TAXID: 9606; SOURCE 26 GENE: SNRPE; SOURCE 27 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 29 MOL_ID: 5; SOURCE 30 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 31 ORGANISM_COMMON: HUMAN; SOURCE 32 ORGANISM_TAXID: 9606; SOURCE 33 GENE: SNRPF, PBSCF; SOURCE 34 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 35 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 36 MOL_ID: 6; SOURCE 37 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 38 ORGANISM_COMMON: HUMAN; SOURCE 39 ORGANISM_TAXID: 9606; SOURCE 40 GENE: SNRPG, PBSCG; SOURCE 41 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 42 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 43 MOL_ID: 7; SOURCE 44 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 45 ORGANISM_COMMON: HUMAN; SOURCE 46 ORGANISM_TAXID: 9606; SOURCE 47 GENE: SMN1, SMN, SMNT, SMN2, SMNC; SOURCE 48 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 49 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SPLICING EXPDTA X-RAY DIFFRACTION AUTHOR H.YI,R.ZHANG REVDAT 2 22-NOV-23 5XJU 1 REMARK REVDAT 1 04-JUL-18 5XJU 0 JRNL AUTH H.YI,R.ZHANG JRNL TITL STRUCTURES OF 7S MUTANT COMPLEXES. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 70.0 REMARK 3 NUMBER OF REFLECTIONS : 25970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1395 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.65 REMARK 3 REFLECTION IN BIN (WORKING SET) : 94 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 3.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 3 REMARK 3 BIN FREE R VALUE : 0.4700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4959 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.547 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.334 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.206 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.704 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.879 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5039 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5009 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6795 ; 1.864 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11506 ; 0.932 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 610 ; 7.719 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 231 ;41.079 ;24.502 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 953 ;23.493 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;19.915 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 774 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5595 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1120 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5XJU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1300003650. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5-8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31276 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.580 REMARK 200 RESOLUTION RANGE LOW (A) : 66.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3S6N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1% PEG8000, 100MM TRIS.HCL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.39000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.37500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.48000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.37500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.39000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.48000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEPTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEPTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: 2, A, B, E, F, G, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE 2 40 REMARK 465 ASP 2 41 REMARK 465 LYS 2 74 REMARK 465 LYS 2 75 REMARK 465 LEU 2 76 REMARK 465 LYS 2 152 REMARK 465 LEU 2 153 REMARK 465 CYS 2 154 REMARK 465 ALA 2 155 REMARK 465 ASP 2 156 REMARK 465 GLY 2 157 REMARK 465 ALA 2 158 REMARK 465 VAL 2 159 REMARK 465 GLY 2 160 REMARK 465 PRO 2 161 REMARK 465 ALA 2 162 REMARK 465 THR 2 163 REMARK 465 ASN 2 164 REMARK 465 GLU 2 165 REMARK 465 SER 2 166 REMARK 465 PRO 2 167 REMARK 465 GLY 2 168 REMARK 465 ILE 2 169 REMARK 465 ASP 2 170 REMARK 465 TYR 2 171 REMARK 465 VAL 2 172 REMARK 465 ASP A 82 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 LEU B 4 REMARK 465 ASN B 5 REMARK 465 LYS B 6 REMARK 465 PRO B 7 REMARK 465 LYS B 8 REMARK 465 SER B 9 REMARK 465 GLU B 10 REMARK 465 MET B 11 REMARK 465 THR B 12 REMARK 465 PRO B 78 REMARK 465 LYS B 79 REMARK 465 SER B 80 REMARK 465 GLY B 81 REMARK 465 LYS B 82 REMARK 465 GLY B 83 REMARK 465 LYS B 84 REMARK 465 LYS B 85 REMARK 465 LYS B 86 REMARK 465 SER B 87 REMARK 465 LYS B 118 REMARK 465 MET E 1 REMARK 465 ALA E 2 REMARK 465 TYR E 3 REMARK 465 ARG E 4 REMARK 465 GLY E 5 REMARK 465 GLN E 6 REMARK 465 GLY E 7 REMARK 465 GLN E 8 REMARK 465 LYS E 9 REMARK 465 VAL E 10 REMARK 465 GLN E 11 REMARK 465 LYS E 12 REMARK 465 VAL E 13 REMARK 465 SER E 91 REMARK 465 ASN E 92 REMARK 465 MET F 1 REMARK 465 SER F 2 REMARK 465 GLU F 77 REMARK 465 GLU F 78 REMARK 465 GLU F 79 REMARK 465 GLU F 80 REMARK 465 ASP F 81 REMARK 465 GLY F 82 REMARK 465 GLU F 83 REMARK 465 MET F 84 REMARK 465 ARG F 85 REMARK 465 GLU F 86 REMARK 465 MET G 1 REMARK 465 SER G 2 REMARK 465 LYS G 3 REMARK 465 ALA G 4 REMARK 465 HIS G 5 REMARK 465 PRO G 6 REMARK 465 PRO G 7 REMARK 465 GLU G 8 REMARK 465 LEU G 9 REMARK 465 THR G 50 REMARK 465 SER G 51 REMARK 465 LEU G 73 REMARK 465 GLU G 74 REMARK 465 ARG G 75 REMARK 465 VAL G 76 REMARK 465 GLY M 26 REMARK 465 GLN M 27 REMARK 465 SER M 28 REMARK 465 ASP M 29 REMARK 465 ASP M 30 REMARK 465 SER M 31 REMARK 465 ASP M 32 REMARK 465 ILE M 33 REMARK 465 TRP M 34 REMARK 465 ALA M 53 REMARK 465 LEU M 54 REMARK 465 LYS M 55 REMARK 465 ASN M 56 REMARK 465 GLY M 57 REMARK 465 ASP M 58 REMARK 465 ILE M 59 REMARK 465 CYS M 60 REMARK 465 GLU M 61 REMARK 465 THR M 62 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU F 3 CG CD1 CD2 REMARK 470 GLU G 47 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU B 23 O THR B 26 1.87 REMARK 500 NH2 ARG E 30 O ASP E 60 2.13 REMARK 500 OE1 GLU F 48 OH TYR F 50 2.14 REMARK 500 O ASP E 82 NH2 ARG G 63 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG 2 185 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 50 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 102 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 CYS G 45 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO 2 45 152.02 -48.54 REMARK 500 ARG 2 78 -173.71 171.31 REMARK 500 GLN 2 127 -159.74 -171.66 REMARK 500 GLN 2 128 -169.77 -165.62 REMARK 500 LEU 2 129 -77.35 -136.97 REMARK 500 ASN 2 132 -93.00 -18.70 REMARK 500 ALA A 42 70.88 64.11 REMARK 500 GLU B 20 -59.43 -27.70 REMARK 500 ASN B 48 -6.03 -53.61 REMARK 500 ASN B 49 35.36 77.11 REMARK 500 GLU B 76 147.22 -179.53 REMARK 500 ILE B 107 -65.55 -107.44 REMARK 500 LYS E 67 -78.42 60.93 REMARK 500 THR E 68 4.86 -56.44 REMARK 500 LYS E 69 -2.26 60.91 REMARK 500 ASP E 82 -16.44 -45.43 REMARK 500 MET F 40 30.77 77.75 REMARK 500 ASN F 67 -4.63 -59.07 REMARK 500 LEU F 70 -63.66 -96.63 REMARK 500 PHE G 12 123.29 -39.29 REMARK 500 ASP G 14 9.78 56.19 REMARK 500 ILE G 57 -35.24 -136.23 REMARK 500 ASN G 65 -136.63 -74.18 REMARK 500 SER G 66 -46.50 53.90 REMARK 500 SER M 49 -15.43 -48.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER 2 131 ASN 2 132 148.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5XJS RELATED DB: PDB REMARK 900 RELATED ID: 5XJT RELATED DB: PDB REMARK 900 RELATED ID: 5XJR RELATED DB: PDB REMARK 900 RELATED ID: 5XJU RELATED DB: PDB REMARK 900 RELATED ID: 5XJQ RELATED DB: PDB DBREF 5XJU 2 40 280 UNP O14893 GEMI2_HUMAN 40 280 DBREF 5XJU A 1 82 UNP P62314 SMD1_HUMAN 1 82 DBREF 5XJU B 1 118 UNP P62316 SMD2_HUMAN 1 118 DBREF 5XJU E 1 92 UNP P62304 RUXE_HUMAN 1 92 DBREF 5XJU F 1 86 UNP P62306 RUXF_HUMAN 1 86 DBREF 5XJU G 1 76 UNP P62308 RUXG_HUMAN 1 76 DBREF 5XJU M 26 62 UNP Q16637 SMN_HUMAN 26 62 SEQADV 5XJU ALA B 61 UNP P62316 ARG 61 ENGINEERED MUTATION SEQRES 1 2 241 PHE ASP PRO SER VAL PRO PRO ARG THR PRO GLN GLU TYR SEQRES 2 2 241 LEU ARG ARG VAL GLN ILE GLU ALA ALA GLN CYS PRO ASP SEQRES 3 2 241 VAL VAL VAL ALA GLN ILE ASP PRO LYS LYS LEU LYS ARG SEQRES 4 2 241 LYS GLN SER VAL ASN ILE SER LEU SER GLY CYS GLN PRO SEQRES 5 2 241 ALA PRO GLU GLY TYR SER PRO THR LEU GLN TRP GLN GLN SEQRES 6 2 241 GLN GLN VAL ALA GLN PHE SER THR VAL ARG GLN ASN VAL SEQRES 7 2 241 ASN LYS HIS ARG SER HIS TRP LYS SER GLN GLN LEU ASP SEQRES 8 2 241 SER ASN VAL THR MET PRO LYS SER GLU ASP GLU GLU GLY SEQRES 9 2 241 TRP LYS LYS PHE CYS LEU GLY GLU LYS LEU CYS ALA ASP SEQRES 10 2 241 GLY ALA VAL GLY PRO ALA THR ASN GLU SER PRO GLY ILE SEQRES 11 2 241 ASP TYR VAL GLN ILE GLY PHE PRO PRO LEU LEU SER ILE SEQRES 12 2 241 VAL SER ARG MET ASN GLN ALA THR VAL THR SER VAL LEU SEQRES 13 2 241 GLU TYR LEU SER ASN TRP PHE GLY GLU ARG ASP PHE THR SEQRES 14 2 241 PRO GLU LEU GLY ARG TRP LEU TYR ALA LEU LEU ALA CYS SEQRES 15 2 241 LEU GLU LYS PRO LEU LEU PRO GLU ALA HIS SER LEU ILE SEQRES 16 2 241 ARG GLN LEU ALA ARG ARG CYS SER GLU VAL ARG LEU LEU SEQRES 17 2 241 VAL ASP SER LYS ASP ASP GLU ARG VAL PRO ALA LEU ASN SEQRES 18 2 241 LEU LEU ILE CYS LEU VAL SER ARG TYR PHE ASP GLN ARG SEQRES 19 2 241 ASP LEU ALA ASP GLU PRO SER SEQRES 1 A 82 MET LYS LEU VAL ARG PHE LEU MET LYS LEU SER HIS GLU SEQRES 2 A 82 THR VAL THR ILE GLU LEU LYS ASN GLY THR GLN VAL HIS SEQRES 3 A 82 GLY THR ILE THR GLY VAL ASP VAL SER MET ASN THR HIS SEQRES 4 A 82 LEU LYS ALA VAL LYS MET THR LEU LYS ASN ARG GLU PRO SEQRES 5 A 82 VAL GLN LEU GLU THR LEU SER ILE ARG GLY ASN ASN ILE SEQRES 6 A 82 ARG TYR PHE ILE LEU PRO ASP SER LEU PRO LEU ASP THR SEQRES 7 A 82 LEU LEU VAL ASP SEQRES 1 B 118 MET SER LEU LEU ASN LYS PRO LYS SER GLU MET THR PRO SEQRES 2 B 118 GLU GLU LEU GLN LYS ARG GLU GLU GLU GLU PHE ASN THR SEQRES 3 B 118 GLY PRO LEU SER VAL LEU THR GLN SER VAL LYS ASN ASN SEQRES 4 B 118 THR GLN VAL LEU ILE ASN CYS ARG ASN ASN LYS LYS LEU SEQRES 5 B 118 LEU GLY ARG VAL LYS ALA PHE ASP ALA HIS CYS ASN MET SEQRES 6 B 118 VAL LEU GLU ASN VAL LYS GLU MET TRP THR GLU VAL PRO SEQRES 7 B 118 LYS SER GLY LYS GLY LYS LYS LYS SER LYS PRO VAL ASN SEQRES 8 B 118 LYS ASP ARG TYR ILE SER LYS MET PHE LEU ARG GLY ASP SEQRES 9 B 118 SER VAL ILE VAL VAL LEU ARG ASN PRO LEU ILE ALA GLY SEQRES 10 B 118 LYS SEQRES 1 E 92 MET ALA TYR ARG GLY GLN GLY GLN LYS VAL GLN LYS VAL SEQRES 2 E 92 MET VAL GLN PRO ILE ASN LEU ILE PHE ARG TYR LEU GLN SEQRES 3 E 92 ASN ARG SER ARG ILE GLN VAL TRP LEU TYR GLU GLN VAL SEQRES 4 E 92 ASN MET ARG ILE GLU GLY CYS ILE ILE GLY PHE ASP GLU SEQRES 5 E 92 TYR MET ASN LEU VAL LEU ASP ASP ALA GLU GLU ILE HIS SEQRES 6 E 92 SER LYS THR LYS SER ARG LYS GLN LEU GLY ARG ILE MET SEQRES 7 E 92 LEU LYS GLY ASP ASN ILE THR LEU LEU GLN SER VAL SER SEQRES 8 E 92 ASN SEQRES 1 F 86 MET SER LEU PRO LEU ASN PRO LYS PRO PHE LEU ASN GLY SEQRES 2 F 86 LEU THR GLY LYS PRO VAL MET VAL LYS LEU LYS TRP GLY SEQRES 3 F 86 MET GLU TYR LYS GLY TYR LEU VAL SER VAL ASP GLY TYR SEQRES 4 F 86 MET ASN MET GLN LEU ALA ASN THR GLU GLU TYR ILE ASP SEQRES 5 F 86 GLY ALA LEU SER GLY HIS LEU GLY GLU VAL LEU ILE ARG SEQRES 6 F 86 CYS ASN ASN VAL LEU TYR ILE ARG GLY VAL GLU GLU GLU SEQRES 7 F 86 GLU GLU ASP GLY GLU MET ARG GLU SEQRES 1 G 76 MET SER LYS ALA HIS PRO PRO GLU LEU LYS LYS PHE MET SEQRES 2 G 76 ASP LYS LYS LEU SER LEU LYS LEU ASN GLY GLY ARG HIS SEQRES 3 G 76 VAL GLN GLY ILE LEU ARG GLY PHE ASP PRO PHE MET ASN SEQRES 4 G 76 LEU VAL ILE ASP GLU CYS VAL GLU MET ALA THR SER GLY SEQRES 5 G 76 GLN GLN ASN ASN ILE GLY MET VAL VAL ILE ARG GLY ASN SEQRES 6 G 76 SER ILE ILE MET LEU GLU ALA LEU GLU ARG VAL SEQRES 1 M 37 GLY GLN SER ASP ASP SER ASP ILE TRP ASP ASP THR ALA SEQRES 2 M 37 LEU ILE LYS ALA TYR ASP LYS ALA VAL ALA SER PHE LYS SEQRES 3 M 37 HIS ALA LEU LYS ASN GLY ASP ILE CYS GLU THR HELIX 1 AA1 THR 2 48 CYS 2 63 1 16 HELIX 2 AA2 THR 2 99 HIS 2 120 1 22 HELIX 3 AA3 HIS 2 120 SER 2 126 1 7 HELIX 4 AA4 ASP 2 140 GLY 2 150 1 11 HELIX 5 AA5 LEU 2 179 SER 2 184 1 6 HELIX 6 AA6 ASN 2 187 GLU 2 204 1 18 HELIX 7 AA7 THR 2 208 LEU 2 222 1 15 HELIX 8 AA8 LEU 2 227 ARG 2 245 1 19 HELIX 9 AA9 GLU 2 254 ARG 2 268 1 15 HELIX 10 AB1 GLN 2 272 ALA 2 276 5 5 HELIX 11 AB2 LYS A 2 LYS A 9 1 8 HELIX 12 AB3 ARG A 61 ASN A 63 5 3 HELIX 13 AB4 PRO A 75 LEU A 80 1 6 HELIX 14 AB5 GLN B 17 THR B 26 1 10 HELIX 15 AB6 LEU B 29 ASN B 39 1 11 HELIX 16 AB7 GLN E 16 ASN E 27 1 12 HELIX 17 AB8 ASN F 6 THR F 15 1 10 HELIX 18 AB9 LEU M 39 PHE M 50 1 12 SHEET 1 AA114 VAL 2 67 VAL 2 68 0 SHEET 2 AA114 GLU F 28 VAL F 36 -1 O VAL F 36 N VAL 2 67 SHEET 3 AA114 MET F 42 ILE F 51 -1 O TYR F 50 N GLU F 28 SHEET 4 AA114 ALA F 54 ILE F 64 -1 O SER F 56 N GLU F 49 SHEET 5 AA114 VAL B 106 LEU B 110 -1 N VAL B 109 O LEU F 63 SHEET 6 AA114 GLN B 41 CYS B 46 -1 N LEU B 43 O LEU B 110 SHEET 7 AA114 LYS B 51 PHE B 59 -1 O GLY B 54 N VAL B 42 SHEET 8 AA114 MET B 65 GLU B 76 -1 O MET B 73 N LYS B 51 SHEET 9 AA114 VAL B 90 LEU B 101 -1 O LYS B 92 N TRP B 74 SHEET 10 AA114 ILE A 65 LEU A 70 -1 N PHE A 68 O PHE B 100 SHEET 11 AA114 THR A 14 LEU A 19 -1 N THR A 16 O ILE A 69 SHEET 12 AA114 GLN A 24 VAL A 32 -1 O VAL A 25 N ILE A 17 SHEET 13 AA114 THR A 38 LEU A 47 -1 O HIS A 39 N GLY A 31 SHEET 14 AA114 ARG A 50 ILE A 60 -1 O LEU A 58 N LEU A 40 SHEET 1 AA214 VAL 2 67 VAL 2 68 0 SHEET 2 AA214 GLU F 28 VAL F 36 -1 O VAL F 36 N VAL 2 67 SHEET 3 AA214 PRO F 18 LEU F 23 -1 N VAL F 21 O TYR F 29 SHEET 4 AA214 VAL F 69 GLY F 74 -1 O LEU F 70 N LYS F 22 SHEET 5 AA214 ARG E 71 LEU E 79 -1 N MET E 78 O ILE F 72 SHEET 6 AA214 LEU E 56 HIS E 65 -1 N LEU E 56 O LEU E 79 SHEET 7 AA214 MET E 41 GLY E 49 -1 N ARG E 42 O ILE E 64 SHEET 8 AA214 ARG E 30 LEU E 35 -1 N VAL E 33 O ILE E 43 SHEET 9 AA214 ILE E 84 SER E 89 -1 O THR E 85 N TRP E 34 SHEET 10 AA214 GLN G 54 ILE G 62 -1 O VAL G 61 N LEU E 87 SHEET 11 AA214 LEU G 40 MET G 48 -1 N LEU G 40 O ILE G 62 SHEET 12 AA214 ARG G 25 PHE G 34 -1 N ILE G 30 O ASP G 43 SHEET 13 AA214 LEU G 17 LEU G 21 -1 N LEU G 21 O ARG G 25 SHEET 14 AA214 ILE G 67 GLU G 71 -1 O MET G 69 N LYS G 20 SHEET 1 AA3 2 ASN 2 83 ILE 2 84 0 SHEET 2 AA3 2 ILE B 115 ALA B 116 1 O ALA B 116 N ASN 2 83 CISPEP 1 LYS 2 224 PRO 2 225 0 -10.01 CRYST1 82.780 112.960 130.750 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012080 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008853 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007648 0.00000