HEADER TRANSFERASE 06-MAY-17 5XKA TITLE CRYSTAL STRUCTURE OF M.TUBERCULOSIS PKNI KINASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PKNI; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-280; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: ATCC 25618 / H37RV; SOURCE 5 GENE: PKNI, RV2914C, MTCY338.02C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE DOMAIN, PKNI, M.TUBERCULOSIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.YAN,D.JIANG,L.QIAN,Q.ZHANG,W.ZHANG,W.ZHOU,K.MI,L.GUDDAT,H.YANG, AUTHOR 2 Z.RAO REVDAT 2 23-OCT-24 5XKA 1 REMARK REVDAT 1 16-MAY-18 5XKA 0 JRNL AUTH Q.YAN,D.JIANG,L.QIAN,Q.ZHANG,W.ZHANG,W.ZHOU,K.MI,L.GUDDAT, JRNL AUTH 2 H.YANG,Z.RAO JRNL TITL STRUCTURAL INSIGHT INTO THE ACTIVATION OF PKNI KINASE FROM JRNL TITL 2 M. TUBERCULOSIS VIA DIMERIZATION OF THE EXTRACELLULAR SENSOR JRNL TITL 3 DOMAIN. JRNL REF STRUCTURE V. 25 1286 2017 JRNL REFN ISSN 1878-4186 JRNL PMID 28712808 JRNL DOI 10.1016/J.STR.2017.06.010 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 157567 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.430 REMARK 3 FREE R VALUE TEST SET COUNT : 3836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.3044 - 4.7927 1.00 5720 133 0.1815 0.2116 REMARK 3 2 4.7927 - 3.8053 1.00 5668 146 0.1398 0.1768 REMARK 3 3 3.8053 - 3.3246 1.00 5719 139 0.1474 0.1836 REMARK 3 4 3.3246 - 3.0208 1.00 5678 138 0.1713 0.2094 REMARK 3 5 3.0208 - 2.8044 1.00 5724 158 0.1792 0.1807 REMARK 3 6 2.8044 - 2.6391 1.00 5682 145 0.1817 0.2131 REMARK 3 7 2.6391 - 2.5069 1.00 5700 144 0.1669 0.2030 REMARK 3 8 2.5069 - 2.3978 1.00 5693 145 0.1591 0.1835 REMARK 3 9 2.3978 - 2.3055 0.99 5662 138 0.1490 0.1523 REMARK 3 10 2.3055 - 2.2260 1.00 5718 139 0.1577 0.1913 REMARK 3 11 2.2260 - 2.1564 1.00 5720 137 0.1516 0.1948 REMARK 3 12 2.1564 - 2.0947 1.00 5698 158 0.1475 0.2238 REMARK 3 13 2.0947 - 2.0396 1.00 5719 138 0.1547 0.2100 REMARK 3 14 2.0396 - 1.9898 1.00 5658 127 0.1585 0.1932 REMARK 3 15 1.9898 - 1.9446 1.00 5724 159 0.1627 0.2060 REMARK 3 16 1.9446 - 1.9032 1.00 5679 136 0.1893 0.2150 REMARK 3 17 1.9032 - 1.8652 1.00 5716 155 0.1716 0.2249 REMARK 3 18 1.8652 - 1.8300 1.00 5623 134 0.1707 0.2079 REMARK 3 19 1.8300 - 1.7973 1.00 5729 143 0.1638 0.1842 REMARK 3 20 1.7973 - 1.7668 1.00 5674 140 0.1672 0.2190 REMARK 3 21 1.7668 - 1.7383 1.00 5723 123 0.1688 0.1995 REMARK 3 22 1.7383 - 1.7116 1.00 5690 149 0.1819 0.2233 REMARK 3 23 1.7116 - 1.6864 1.00 5690 149 0.1925 0.2296 REMARK 3 24 1.6864 - 1.6626 1.00 5720 157 0.2009 0.2361 REMARK 3 25 1.6626 - 1.6402 1.00 5666 115 0.2115 0.2594 REMARK 3 26 1.6402 - 1.6189 1.00 5730 153 0.2274 0.2651 REMARK 3 27 1.6189 - 1.5986 0.98 5608 138 0.2515 0.3337 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3989 REMARK 3 ANGLE : 1.119 5454 REMARK 3 CHIRALITY : 0.370 606 REMARK 3 PLANARITY : 0.007 735 REMARK 3 DIHEDRAL : 18.941 1439 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE ENTRY CONTAINS FRIEDEL PAIRS IN REMARK 3 I_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 5XKA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1300003679. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97854 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 157567 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.62100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN I_PLUS/MINUS COLUMNS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 3 M SODIUM REMARK 280 CHLORIDE, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.91150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.22800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.76650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.22800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.91150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.76650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -7 REMARK 465 PRO A -6 REMARK 465 LEU A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 PRO A -2 REMARK 465 GLU A -1 REMARK 465 PHE A 0 REMARK 465 MSE A 1 REMARK 465 GLN A 148 REMARK 465 SER A 149 REMARK 465 ALA A 150 REMARK 465 GLY A 151 REMARK 465 ASP A 152 REMARK 465 ASP A 261 REMARK 465 GLN A 262 REMARK 465 SER A 263 REMARK 465 SER A 264 REMARK 465 GLY A 265 REMARK 465 GLY A 266 REMARK 465 VAL A 267 REMARK 465 ASP A 268 REMARK 465 ALA A 269 REMARK 465 SER A 270 REMARK 465 GLU A 271 REMARK 465 VAL A 272 REMARK 465 THR A 273 REMARK 465 ALA A 274 REMARK 465 ALA A 275 REMARK 465 ALA A 276 REMARK 465 GLY A 277 REMARK 465 GLU A 278 REMARK 465 GLU A 279 REMARK 465 ALA A 280 REMARK 465 GLY B -7 REMARK 465 PRO B -6 REMARK 465 LEU B -5 REMARK 465 GLY B -4 REMARK 465 SER B -3 REMARK 465 PRO B -2 REMARK 465 GLU B -1 REMARK 465 PHE B 0 REMARK 465 MSE B 1 REMARK 465 GLN B 148 REMARK 465 SER B 149 REMARK 465 ALA B 150 REMARK 465 GLY B 151 REMARK 465 ASP B 152 REMARK 465 ALA B 258 REMARK 465 ILE B 259 REMARK 465 ALA B 260 REMARK 465 ASP B 261 REMARK 465 GLN B 262 REMARK 465 SER B 263 REMARK 465 SER B 264 REMARK 465 GLY B 265 REMARK 465 GLY B 266 REMARK 465 VAL B 267 REMARK 465 ASP B 268 REMARK 465 ALA B 269 REMARK 465 SER B 270 REMARK 465 GLU B 271 REMARK 465 VAL B 272 REMARK 465 THR B 273 REMARK 465 ALA B 274 REMARK 465 ALA B 275 REMARK 465 ALA B 276 REMARK 465 GLY B 277 REMARK 465 GLU B 278 REMARK 465 GLU B 279 REMARK 465 ALA B 280 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 204 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 204 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 553 O HOH A 574 1.84 REMARK 500 O HOH B 558 O HOH B 578 1.85 REMARK 500 O HOH B 523 O HOH B 590 1.94 REMARK 500 O HOH A 586 O HOH A 604 2.01 REMARK 500 OE2 GLU B 25 O HOH B 301 2.08 REMARK 500 O HOH B 322 O HOH B 388 2.11 REMARK 500 NH1 ARG B 16 O HOH B 302 2.12 REMARK 500 O HOH B 316 O HOH B 352 2.16 REMARK 500 NE2 GLN A 254 O HOH A 301 2.16 REMARK 500 O HOH A 523 O HOH A 532 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 556 O HOH A 580 4566 1.85 REMARK 500 O HOH A 406 O HOH B 356 3746 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 230 CB SER A 230 OG -0.089 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 136 -7.72 80.92 REMARK 500 ASP A 137 57.42 -148.05 REMARK 500 ARG A 219 71.32 -150.82 REMARK 500 ARG B 136 -8.77 80.32 REMARK 500 ASP B 137 58.02 -146.51 REMARK 500 HIS B 206 142.25 -33.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 596 DISTANCE = 5.85 ANGSTROMS DBREF 5XKA A 1 280 UNP P9WI69 PKNI_MYCTU 1 280 DBREF 5XKA B 1 280 UNP P9WI69 PKNI_MYCTU 1 280 SEQADV 5XKA GLY A -7 UNP P9WI69 EXPRESSION TAG SEQADV 5XKA PRO A -6 UNP P9WI69 EXPRESSION TAG SEQADV 5XKA LEU A -5 UNP P9WI69 EXPRESSION TAG SEQADV 5XKA GLY A -4 UNP P9WI69 EXPRESSION TAG SEQADV 5XKA SER A -3 UNP P9WI69 EXPRESSION TAG SEQADV 5XKA PRO A -2 UNP P9WI69 EXPRESSION TAG SEQADV 5XKA GLU A -1 UNP P9WI69 EXPRESSION TAG SEQADV 5XKA PHE A 0 UNP P9WI69 EXPRESSION TAG SEQADV 5XKA GLY B -7 UNP P9WI69 EXPRESSION TAG SEQADV 5XKA PRO B -6 UNP P9WI69 EXPRESSION TAG SEQADV 5XKA LEU B -5 UNP P9WI69 EXPRESSION TAG SEQADV 5XKA GLY B -4 UNP P9WI69 EXPRESSION TAG SEQADV 5XKA SER B -3 UNP P9WI69 EXPRESSION TAG SEQADV 5XKA PRO B -2 UNP P9WI69 EXPRESSION TAG SEQADV 5XKA GLU B -1 UNP P9WI69 EXPRESSION TAG SEQADV 5XKA PHE B 0 UNP P9WI69 EXPRESSION TAG SEQRES 1 A 288 GLY PRO LEU GLY SER PRO GLU PHE MSE ALA LEU ALA SER SEQRES 2 A 288 GLY VAL THR PHE ALA GLY TYR THR VAL VAL ARG MSE LEU SEQRES 3 A 288 GLY CYS SER ALA MSE GLY GLU VAL TYR LEU VAL GLN HIS SEQRES 4 A 288 PRO GLY PHE PRO GLY TRP GLN ALA LEU LYS VAL LEU SER SEQRES 5 A 288 PRO ALA MSE ALA ALA ASP ASP GLU PHE ARG ARG ARG PHE SEQRES 6 A 288 GLN ARG GLU THR GLU VAL ALA ALA ARG LEU PHE HIS PRO SEQRES 7 A 288 HIS ILE LEU GLU VAL HIS ASP ARG GLY GLU PHE ASP GLY SEQRES 8 A 288 GLN LEU TRP ILE ALA MSE ASP TYR VAL ASP GLY ILE ASP SEQRES 9 A 288 ALA THR GLN HIS MSE ALA ASP ARG PHE PRO ALA VAL LEU SEQRES 10 A 288 PRO VAL GLY GLU VAL LEU ALA ILE VAL THR ALA VAL ALA SEQRES 11 A 288 GLY ALA LEU ASP TYR ALA HIS GLN ARG GLY LEU LEU HIS SEQRES 12 A 288 ARG ASP VAL ASN PRO ALA ASN VAL VAL LEU THR SER GLN SEQRES 13 A 288 SER ALA GLY ASP GLN ARG ILE LEU LEU ALA ASP PHE GLY SEQRES 14 A 288 ILE ALA SER GLN PRO SER TYR PRO ALA PRO GLU LEU SER SEQRES 15 A 288 ALA GLY ALA ASP VAL ASP GLY ARG ALA ASP GLN TYR ALA SEQRES 16 A 288 LEU ALA LEU THR ALA ILE HIS LEU PHE ALA GLY ALA PRO SEQRES 17 A 288 PRO VAL ASP ARG SER HIS THR GLY PRO LEU GLN PRO PRO SEQRES 18 A 288 LYS LEU SER ALA PHE ARG PRO ASP LEU ALA ARG LEU ASP SEQRES 19 A 288 GLY VAL LEU SER ARG ALA LEU ALA THR ALA PRO ALA ASP SEQRES 20 A 288 ARG PHE GLY SER CYS ARG GLU PHE ALA ASP ALA MSE ASN SEQRES 21 A 288 GLU GLN ALA GLY VAL ALA ILE ALA ASP GLN SER SER GLY SEQRES 22 A 288 GLY VAL ASP ALA SER GLU VAL THR ALA ALA ALA GLY GLU SEQRES 23 A 288 GLU ALA SEQRES 1 B 288 GLY PRO LEU GLY SER PRO GLU PHE MSE ALA LEU ALA SER SEQRES 2 B 288 GLY VAL THR PHE ALA GLY TYR THR VAL VAL ARG MSE LEU SEQRES 3 B 288 GLY CYS SER ALA MSE GLY GLU VAL TYR LEU VAL GLN HIS SEQRES 4 B 288 PRO GLY PHE PRO GLY TRP GLN ALA LEU LYS VAL LEU SER SEQRES 5 B 288 PRO ALA MSE ALA ALA ASP ASP GLU PHE ARG ARG ARG PHE SEQRES 6 B 288 GLN ARG GLU THR GLU VAL ALA ALA ARG LEU PHE HIS PRO SEQRES 7 B 288 HIS ILE LEU GLU VAL HIS ASP ARG GLY GLU PHE ASP GLY SEQRES 8 B 288 GLN LEU TRP ILE ALA MSE ASP TYR VAL ASP GLY ILE ASP SEQRES 9 B 288 ALA THR GLN HIS MSE ALA ASP ARG PHE PRO ALA VAL LEU SEQRES 10 B 288 PRO VAL GLY GLU VAL LEU ALA ILE VAL THR ALA VAL ALA SEQRES 11 B 288 GLY ALA LEU ASP TYR ALA HIS GLN ARG GLY LEU LEU HIS SEQRES 12 B 288 ARG ASP VAL ASN PRO ALA ASN VAL VAL LEU THR SER GLN SEQRES 13 B 288 SER ALA GLY ASP GLN ARG ILE LEU LEU ALA ASP PHE GLY SEQRES 14 B 288 ILE ALA SER GLN PRO SER TYR PRO ALA PRO GLU LEU SER SEQRES 15 B 288 ALA GLY ALA ASP VAL ASP GLY ARG ALA ASP GLN TYR ALA SEQRES 16 B 288 LEU ALA LEU THR ALA ILE HIS LEU PHE ALA GLY ALA PRO SEQRES 17 B 288 PRO VAL ASP ARG SER HIS THR GLY PRO LEU GLN PRO PRO SEQRES 18 B 288 LYS LEU SER ALA PHE ARG PRO ASP LEU ALA ARG LEU ASP SEQRES 19 B 288 GLY VAL LEU SER ARG ALA LEU ALA THR ALA PRO ALA ASP SEQRES 20 B 288 ARG PHE GLY SER CYS ARG GLU PHE ALA ASP ALA MSE ASN SEQRES 21 B 288 GLU GLN ALA GLY VAL ALA ILE ALA ASP GLN SER SER GLY SEQRES 22 B 288 GLY VAL ASP ALA SER GLU VAL THR ALA ALA ALA GLY GLU SEQRES 23 B 288 GLU ALA MODRES 5XKA MSE A 17 MET MODIFIED RESIDUE MODRES 5XKA MSE A 23 MET MODIFIED RESIDUE MODRES 5XKA MSE A 47 MET MODIFIED RESIDUE MODRES 5XKA MSE A 89 MET MODIFIED RESIDUE MODRES 5XKA MSE A 101 MET MODIFIED RESIDUE MODRES 5XKA MSE A 251 MET MODIFIED RESIDUE MODRES 5XKA MSE B 17 MET MODIFIED RESIDUE MODRES 5XKA MSE B 23 MET MODIFIED RESIDUE MODRES 5XKA MSE B 47 MET MODIFIED RESIDUE MODRES 5XKA MSE B 89 MET MODIFIED RESIDUE MODRES 5XKA MSE B 101 MET MODIFIED RESIDUE MODRES 5XKA MSE B 251 MET MODIFIED RESIDUE HET MSE A 17 8 HET MSE A 23 8 HET MSE A 47 8 HET MSE A 89 8 HET MSE A 101 8 HET MSE A 251 8 HET MSE B 17 8 HET MSE B 23 8 HET MSE B 47 8 HET MSE B 89 8 HET MSE B 101 8 HET MSE B 251 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 HOH *616(H2 O) HELIX 1 AA1 SER A 44 ASP A 50 1 7 HELIX 2 AA2 ASP A 50 ALA A 65 1 16 HELIX 3 AA3 ALA A 97 PHE A 105 1 9 HELIX 4 AA4 PRO A 110 ARG A 131 1 22 HELIX 5 AA5 ASN A 139 ALA A 141 5 3 HELIX 6 AA6 ALA A 170 GLY A 176 1 7 HELIX 7 AA7 ASP A 180 GLY A 198 1 19 HELIX 8 AA8 LYS A 214 ARG A 219 1 6 HELIX 9 AA9 PRO A 220 ARG A 224 5 5 HELIX 10 AB1 LEU A 225 LEU A 233 1 9 HELIX 11 AB2 ALA A 236 ARG A 240 5 5 HELIX 12 AB3 SER A 243 GLY A 256 1 14 HELIX 13 AB4 VAL A 257 ALA A 260 5 4 HELIX 14 AB5 SER B 44 ALA B 49 1 6 HELIX 15 AB6 ASP B 50 LEU B 67 1 18 HELIX 16 AB7 ALA B 97 PHE B 105 1 9 HELIX 17 AB8 PRO B 110 ARG B 131 1 22 HELIX 18 AB9 ASN B 139 ALA B 141 5 3 HELIX 19 AC1 ALA B 170 GLY B 176 1 7 HELIX 20 AC2 GLY B 181 GLY B 198 1 18 HELIX 21 AC3 LYS B 214 ARG B 219 1 6 HELIX 22 AC4 PRO B 220 ARG B 224 5 5 HELIX 23 AC5 LEU B 225 LEU B 233 1 9 HELIX 24 AC6 ALA B 236 ARG B 240 5 5 HELIX 25 AC7 SER B 243 GLY B 256 1 14 SHEET 1 AA1 6 THR A 8 PHE A 9 0 SHEET 2 AA1 6 TYR A 12 SER A 21 -1 O TYR A 12 N PHE A 9 SHEET 3 AA1 6 GLY A 24 GLN A 30 -1 O LEU A 28 N VAL A 15 SHEET 4 AA1 6 GLN A 38 LEU A 43 -1 O LEU A 40 N TYR A 27 SHEET 5 AA1 6 GLN A 84 ASP A 90 -1 O ILE A 87 N LYS A 41 SHEET 6 AA1 6 VAL A 75 PHE A 81 -1 N ASP A 77 O ALA A 88 SHEET 1 AA2 3 GLY A 94 ASP A 96 0 SHEET 2 AA2 3 VAL A 143 THR A 146 -1 O LEU A 145 N ILE A 95 SHEET 3 AA2 3 ILE A 155 LEU A 157 -1 O LEU A 156 N VAL A 144 SHEET 1 AA3 6 THR B 8 PHE B 9 0 SHEET 2 AA3 6 TYR B 12 SER B 21 -1 O TYR B 12 N PHE B 9 SHEET 3 AA3 6 GLY B 24 GLN B 30 -1 O LEU B 28 N VAL B 15 SHEET 4 AA3 6 GLN B 38 LEU B 43 -1 O VAL B 42 N GLU B 25 SHEET 5 AA3 6 GLN B 84 ASP B 90 -1 O ILE B 87 N LYS B 41 SHEET 6 AA3 6 VAL B 75 PHE B 81 -1 N ASP B 77 O ALA B 88 SHEET 1 AA4 3 GLY B 94 ASP B 96 0 SHEET 2 AA4 3 VAL B 143 THR B 146 -1 O LEU B 145 N ILE B 95 SHEET 3 AA4 3 ILE B 155 LEU B 157 -1 O LEU B 156 N VAL B 144 SSBOND 1 CYS A 20 CYS B 20 1555 1555 2.07 LINK C ARG A 16 N MSE A 17 1555 1555 1.33 LINK C MSE A 17 N LEU A 18 1555 1555 1.33 LINK C ALA A 22 N MSE A 23 1555 1555 1.31 LINK C MSE A 23 N GLY A 24 1555 1555 1.31 LINK C ALA A 46 N MSE A 47 1555 1555 1.32 LINK C MSE A 47 N ALA A 48 1555 1555 1.33 LINK C ALA A 88 N MSE A 89 1555 1555 1.33 LINK C MSE A 89 N ASP A 90 1555 1555 1.34 LINK C HIS A 100 N MSE A 101 1555 1555 1.33 LINK C MSE A 101 N ALA A 102 1555 1555 1.34 LINK C ALA A 250 N MSE A 251 1555 1555 1.33 LINK C MSE A 251 N ASN A 252 1555 1555 1.33 LINK C ARG B 16 N MSE B 17 1555 1555 1.33 LINK C MSE B 17 N LEU B 18 1555 1555 1.33 LINK C ALA B 22 N MSE B 23 1555 1555 1.33 LINK C MSE B 23 N GLY B 24 1555 1555 1.33 LINK C ALA B 46 N MSE B 47 1555 1555 1.33 LINK C MSE B 47 N ALA B 48 1555 1555 1.33 LINK C ALA B 88 N MSE B 89 1555 1555 1.33 LINK C MSE B 89 N ASP B 90 1555 1555 1.34 LINK C HIS B 100 N MSE B 101 1555 1555 1.32 LINK C MSE B 101 N ALA B 102 1555 1555 1.34 LINK C ALA B 250 N MSE B 251 1555 1555 1.34 LINK C MSE B 251 N ASN B 252 1555 1555 1.33 CISPEP 1 PHE A 105 PRO A 106 0 8.28 CISPEP 2 PHE B 105 PRO B 106 0 2.30 CRYST1 45.823 113.533 118.456 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021823 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008808 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008442 0.00000