HEADER IMMUNE SYSTEM 09-MAY-17 5XKU TITLE CRYSTAL STRUCTURE OF HEMAGGLUTININ GLOBULAR HEAD FROM AN H7N9 TITLE 2 INFLUENZA VIRUS IN COMPLEX WITH A NEUTRALIZING ANTIBODY HNIGGA6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INFLUENZA A VIRUS; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HNIGGA6 LIGHT CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HNIGGA6 HEAVY CHAIN; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 11320; SOURCE 4 EXPRESSION_SYSTEM: INSECT CELL EXPRESSION VECTOR PTIE1; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 266783; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: MAMMALIAN EXPRESSION VECTOR PCBIO; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 386595; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: MAMMALIAN EXPRESSION VECTOR PCBIO; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 386595 KEYWDS HEMAGGLUTININ, COMPLEX, ANTIBODY, INFLUENZA A, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.CHEN,J.WANG,W.WANG,X.GAO,S.CUI,Q.JIN REVDAT 5 22-NOV-23 5XKU 1 HETSYN REVDAT 4 29-JUL-20 5XKU 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 28-FEB-18 5XKU 1 JRNL REVDAT 2 20-DEC-17 5XKU 1 JRNL REVDAT 1 29-NOV-17 5XKU 0 JRNL AUTH C.CHEN,L.LIU,Y.XIAO,S.CUI,J.WANG,Q.JIN JRNL TITL STRUCTURAL INSIGHT INTO A HUMAN NEUTRALIZING ANTIBODY JRNL TITL 2 AGAINST INFLUENZA VIRUS H7N9 JRNL REF J. VIROL. V. 92 2018 JRNL REFN ESSN 1098-5514 JRNL PMID 29212936 JRNL DOI 10.1128/JVI.01850-17 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 70016 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 3464 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3349 - 5.2027 0.99 3002 152 0.1746 0.2205 REMARK 3 2 5.2027 - 4.1303 0.99 2773 149 0.1532 0.1781 REMARK 3 3 4.1303 - 3.6084 0.99 2740 145 0.1703 0.2084 REMARK 3 4 3.6084 - 3.2786 1.00 2753 150 0.1922 0.2305 REMARK 3 5 3.2786 - 3.0436 0.99 2653 154 0.1933 0.2215 REMARK 3 6 3.0436 - 2.8642 1.00 2730 132 0.2180 0.2426 REMARK 3 7 2.8642 - 2.7208 0.99 2674 126 0.2244 0.2755 REMARK 3 8 2.7208 - 2.6024 0.99 2684 138 0.2261 0.2725 REMARK 3 9 2.6024 - 2.5022 0.99 2673 147 0.2312 0.2687 REMARK 3 10 2.5022 - 2.4158 0.99 2662 131 0.2346 0.2732 REMARK 3 11 2.4158 - 2.3403 0.99 2668 112 0.2458 0.2660 REMARK 3 12 2.3403 - 2.2734 0.99 2661 135 0.2437 0.3152 REMARK 3 13 2.2734 - 2.2136 0.99 2671 129 0.2455 0.2946 REMARK 3 14 2.2136 - 2.1596 0.99 2610 144 0.2518 0.2718 REMARK 3 15 2.1596 - 2.1105 0.99 2659 133 0.2587 0.2917 REMARK 3 16 2.1105 - 2.0656 0.99 2606 138 0.2585 0.2835 REMARK 3 17 2.0656 - 2.0242 0.99 2631 135 0.2749 0.2773 REMARK 3 18 2.0242 - 1.9860 0.99 2640 119 0.2638 0.2886 REMARK 3 19 1.9860 - 1.9506 0.99 2618 131 0.2624 0.3081 REMARK 3 20 1.9506 - 1.9175 0.99 2571 153 0.2816 0.3409 REMARK 3 21 1.9175 - 1.8866 0.98 2619 143 0.2859 0.3378 REMARK 3 22 1.8866 - 1.8575 0.98 2586 138 0.2868 0.2992 REMARK 3 23 1.8575 - 1.8302 0.99 2594 148 0.3010 0.3464 REMARK 3 24 1.8302 - 1.8044 0.98 2565 155 0.3075 0.3760 REMARK 3 25 1.8044 - 1.7801 0.95 2509 127 0.3479 0.3823 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4995 REMARK 3 ANGLE : 0.931 6793 REMARK 3 CHIRALITY : 0.059 757 REMARK 3 PLANARITY : 0.006 870 REMARK 3 DIHEDRAL : 12.332 2971 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XKU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1300003629. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70029 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 47.318 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 7.070 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.24 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4N5J REMARK 200 REMARK 200 REMARK: RHOMBUS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE HYDRATE, 20% W/V REMARK 280 POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 141.86400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.49150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.49150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.93200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.49150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.49150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 212.79600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.49150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.49150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 70.93200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.49150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.49150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 212.79600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 141.86400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 35.49150 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 -106.47450 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -70.93200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 10 REMARK 465 ASP A 11 REMARK 465 LYS A 12 REMARK 465 ILE A 13 REMARK 465 CYS A 14 REMARK 465 LEU A 15 REMARK 465 GLY A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 ALA A 19 REMARK 465 VAL A 20 REMARK 465 SER A 21 REMARK 465 ASN A 22 REMARK 465 GLY A 23 REMARK 465 THR A 24 REMARK 465 LYS A 25 REMARK 465 VAL A 26 REMARK 465 ASN A 27 REMARK 465 THR A 28 REMARK 465 LEU A 29 REMARK 465 THR A 30 REMARK 465 GLU A 31 REMARK 465 ARG A 32 REMARK 465 GLY A 33 REMARK 465 VAL A 34 REMARK 465 GLU A 35 REMARK 465 VAL A 36 REMARK 465 VAL A 37 REMARK 465 ASN A 38 REMARK 465 ALA A 39 REMARK 465 THR A 40 REMARK 465 GLU A 41 REMARK 465 THR A 42 REMARK 465 VAL A 43 REMARK 465 GLU A 44 REMARK 465 ARG A 45 REMARK 465 THR A 46 REMARK 465 ASN A 47 REMARK 465 ILE A 48 REMARK 465 PRO A 49 REMARK 465 ARG A 50 REMARK 465 ILE A 51 REMARK 465 CYS A 52 REMARK 465 SER A 53 REMARK 465 LYS A 54 REMARK 465 GLY A 55 REMARK 465 LYS A 56 REMARK 465 SER A 264 REMARK 465 MET A 265 REMARK 465 GLY A 266 REMARK 465 ILE A 267 REMARK 465 GLN A 268 REMARK 465 SER A 269 REMARK 465 GLY A 270 REMARK 465 VAL A 271 REMARK 465 GLN A 272 REMARK 465 VAL A 273 REMARK 465 ASP A 274 REMARK 465 ALA A 275 REMARK 465 ASN A 276 REMARK 465 CYS A 277 REMARK 465 GLU A 278 REMARK 465 GLY A 279 REMARK 465 ASP A 280 REMARK 465 CYS A 281 REMARK 465 TYR A 282 REMARK 465 HIS A 283 REMARK 465 SER A 284 REMARK 465 GLY A 285 REMARK 465 GLY A 286 REMARK 465 THR A 287 REMARK 465 ILE A 288 REMARK 465 ILE A 289 REMARK 465 SER A 290 REMARK 465 ASN A 291 REMARK 465 LEU A 292 REMARK 465 PRO A 293 REMARK 465 PHE A 294 REMARK 465 GLN A 295 REMARK 465 ASN A 296 REMARK 465 ILE A 297 REMARK 465 ASP A 298 REMARK 465 SER A 299 REMARK 465 ARG A 300 REMARK 465 ALA A 301 REMARK 465 VAL A 302 REMARK 465 GLY A 303 REMARK 465 LYS A 304 REMARK 465 CYS A 305 REMARK 465 PRO A 306 REMARK 465 ARG A 307 REMARK 465 TYR A 308 REMARK 465 VAL A 309 REMARK 465 LYS A 310 REMARK 465 GLN A 311 REMARK 465 ARG A 312 REMARK 465 SER A 313 REMARK 465 LEU A 314 REMARK 465 LEU A 315 REMARK 465 LEU A 316 REMARK 465 ALA A 317 REMARK 465 THR A 318 REMARK 465 GLY A 319 REMARK 465 MET A 320 REMARK 465 LYS A 321 REMARK 465 ASN A 322 REMARK 465 VAL A 323 REMARK 465 PRO A 324 REMARK 465 GLU A 325 REMARK 465 ILE A 326 REMARK 465 PRO A 327 REMARK 465 LYS A 328 REMARK 465 GLY A 329 REMARK 465 ARG A 330 REMARK 465 HIS A 331 REMARK 465 HIS A 332 REMARK 465 HIS A 333 REMARK 465 HIS A 334 REMARK 465 HIS A 335 REMARK 465 HIS A 336 REMARK 465 PRO B -6 REMARK 465 GLY B -5 REMARK 465 ALA B -4 REMARK 465 ASP B -3 REMARK 465 CYS B -2 REMARK 465 GLY B 210 REMARK 465 GLU B 211 REMARK 465 CYS B 212 REMARK 465 SER C -4 REMARK 465 SER C 135 REMARK 465 SER C 136 REMARK 465 LYS C 137 REMARK 465 SER C 138 REMARK 465 THR C 139 REMARK 465 GLY C 198 REMARK 465 LYS C 222 REMARK 465 SER C 223 REMARK 465 CYS C 224 REMARK 465 ASP C 225 REMARK 465 LYS C 226 REMARK 465 THR C 227 REMARK 465 SER C 228 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 121 O HOH B 301 1.73 REMARK 500 O HOH A 618 O HOH A 629 1.84 REMARK 500 O HOH A 506 O HOH A 607 1.92 REMARK 500 NE2 GLN A 211 O HOH A 501 1.94 REMARK 500 O SER A 128 O HOH A 502 1.94 REMARK 500 CB ARG A 90 OE2 GLU A 92 1.96 REMARK 500 NZ LYS B 181 O HOH B 302 1.98 REMARK 500 OE2 GLU A 105 O HOH A 503 1.98 REMARK 500 OE1 GLU A 81 O HOH A 504 2.05 REMARK 500 O HOH B 323 O HOH B 447 2.05 REMARK 500 O HOH C 402 O HOH C 409 2.05 REMARK 500 O HOH A 679 O HOH A 697 2.06 REMARK 500 NE2 GLN C 113 O HOH C 301 2.06 REMARK 500 NZ LYS C 62 O HOH C 302 2.07 REMARK 500 O HOH A 671 O HOH A 678 2.10 REMARK 500 O HOH A 634 O HOH A 700 2.12 REMARK 500 OG SER C 82 O HOH C 303 2.14 REMARK 500 O ASN A 199 O HOH A 505 2.15 REMARK 500 O HOH B 350 O HOH C 354 2.17 REMARK 500 NZ LYS C 209 O HOH C 304 2.18 REMARK 500 NE2 GLN C -1 O HOH C 305 2.19 REMARK 500 O HOH B 439 O HOH B 441 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 657 O HOH C 414 6434 2.02 REMARK 500 O HOH A 532 O HOH A 661 8444 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 97 -70.31 -121.50 REMARK 500 SER A 146 -158.02 -148.06 REMARK 500 SER B 28 -116.06 48.80 REMARK 500 ALA B 49 -37.41 68.74 REMARK 500 ALA B 82 169.97 172.32 REMARK 500 ASN B 136 62.55 63.05 REMARK 500 ALA B 182 -70.08 -56.57 REMARK 500 SER C 11 -17.86 74.10 REMARK 500 HIS C 102 137.02 -171.57 REMARK 500 ASP C 152 70.82 61.74 REMARK 500 THR C 168 -37.41 -132.43 REMARK 500 SER C 180 27.93 -79.63 REMARK 500 GLU C 220 147.44 -172.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 418 DISTANCE = 5.94 ANGSTROMS DBREF 5XKU A 10 336 PDB 5XKU 5XKU 10 336 DBREF 5XKU B -6 212 PDB 5XKU 5XKU -6 212 DBREF 5XKU C -4 228 PDB 5XKU 5XKU -4 228 SEQRES 1 A 328 MET ASP LYS ILE CYS LEU GLY HIS HIS ALA VAL SER ASN SEQRES 2 A 328 GLY THR LYS VAL ASN THR LEU THR GLU ARG GLY VAL GLU SEQRES 3 A 328 VAL VAL ASN ALA THR GLU THR VAL GLU ARG THR ASN ILE SEQRES 4 A 328 PRO ARG ILE CYS SER LYS GLY LYS ARG THR VAL ASP LEU SEQRES 5 A 328 GLY GLN CYS GLY LEU LEU GLY THR ILE THR GLY PRO PRO SEQRES 6 A 328 GLN CYS ASP GLN PHE LEU GLU PHE SER ALA ASP LEU ILE SEQRES 7 A 328 ILE GLU ARG ARG GLU GLY SER ASP VAL CYS TYR PRO GLY SEQRES 8 A 328 LYS PHE VAL ASN GLU GLU ALA LEU ARG GLN ILE LEU ARG SEQRES 9 A 328 GLU SER GLY GLY ILE ASP LYS GLU ALA MET GLY PHE THR SEQRES 10 A 328 TYR SER GLY ILE ARG THR ASN GLY ALA THR SER ALA CYS SEQRES 11 A 328 ARG ARG SER GLY SER SER PHE TYR ALA GLU MET LYS TRP SEQRES 12 A 328 LEU LEU SER ASN THR ASP ASN ALA ALA PHE PRO GLN MET SEQRES 13 A 328 THR LYS SER TYR LYS ASN THR ARG LYS SER PRO ALA LEU SEQRES 14 A 328 ILE VAL TRP GLY ILE HIS HIS SER VAL SER THR ALA GLU SEQRES 15 A 328 GLN THR LYS LEU TYR GLY SER GLY ASN LYS LEU VAL THR SEQRES 16 A 328 VAL GLY SER SER ASN TYR GLN GLN SER PHE VAL PRO SER SEQRES 17 A 328 PRO GLY ALA ARG PRO GLN VAL ASN GLY LEU SER GLY ARG SEQRES 18 A 328 ILE ASP PHE HIS TRP LEU MET LEU ASN PRO ASN ASP THR SEQRES 19 A 328 VAL THR PHE SER PHE ASN GLY ALA PHE ILE ALA PRO ASP SEQRES 20 A 328 ARG ALA SER PHE LEU ARG GLY LYS SER MET GLY ILE GLN SEQRES 21 A 328 SER GLY VAL GLN VAL ASP ALA ASN CYS GLU GLY ASP CYS SEQRES 22 A 328 TYR HIS SER GLY GLY THR ILE ILE SER ASN LEU PRO PHE SEQRES 23 A 328 GLN ASN ILE ASP SER ARG ALA VAL GLY LYS CYS PRO ARG SEQRES 24 A 328 TYR VAL LYS GLN ARG SER LEU LEU LEU ALA THR GLY MET SEQRES 25 A 328 LYS ASN VAL PRO GLU ILE PRO LYS GLY ARG HIS HIS HIS SEQRES 26 A 328 HIS HIS HIS SEQRES 1 B 219 PRO GLY ALA ASP CYS ASP ILE GLN MET THR GLN SER PRO SEQRES 2 B 219 SER SER LEU SER ALA SER VAL GLY ASP ARG VAL THR ILE SEQRES 3 B 219 THR CYS ARG ALA SER GLN SER ILE SER SER TYR LEU ASN SEQRES 4 B 219 TRP TYR GLN GLN LYS PRO GLY LYS ALA PRO LYS LEU LEU SEQRES 5 B 219 ILE TYR ALA ALA SER SER LEU GLN SER GLY VAL PRO SER SEQRES 6 B 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 B 219 THR ILE SER SER LEU GLN PRO GLU ASP PHE ALA THR TYR SEQRES 8 B 219 TYR CYS GLN GLN SER TYR SER THR PRO PRO ALA PHE GLY SEQRES 9 B 219 GLN GLY THR LYS VAL GLU ILE LYS ARG THR VAL ALA ALA SEQRES 10 B 219 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 B 219 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 B 219 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 B 219 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 B 219 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 B 219 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 B 219 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 B 219 PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 C 233 SER GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL SEQRES 2 C 233 LYS PRO SER GLU THR LEU SER LEU THR CYS THR VAL SER SEQRES 3 C 233 GLY GLY SER ILE SER SER GLY GLY TYR TYR TRP SER TRP SEQRES 4 C 233 ILE ARG GLN HIS PRO GLY LYS GLY LEU GLU TRP ILE GLY SEQRES 5 C 233 TYR ILE TYR TYR SER GLY SER THR ASP TYR ASN PRO SER SEQRES 6 C 233 LEU LYS SER ARG VAL THR ILE SER VAL ASP THR SER LYS SEQRES 7 C 233 ASN GLN PHE SER LEU LYS LEU SER SER VAL THR ALA ALA SEQRES 8 C 233 ASP THR ALA VAL TYR TYR CYS ALA GLY GLY SER THR GLY SEQRES 9 C 233 ASP ARG HIS TYR TYR TYR TYR GLY MET ASP VAL TRP GLY SEQRES 10 C 233 GLN GLY THR THR VAL THR VAL SER SER ALA SER THR LYS SEQRES 11 C 233 GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER SEQRES 12 C 233 THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS SEQRES 13 C 233 ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER SEQRES 14 C 233 GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL SEQRES 15 C 233 LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL SEQRES 16 C 233 THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE SEQRES 17 C 233 CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP SEQRES 18 C 233 LYS ARG VAL GLU PRO LYS SER CYS ASP LYS THR SER HET NAG A 401 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG C8 H15 N O6 FORMUL 5 HOH *487(H2 O) HELIX 1 AA1 LEU A 67 GLY A 72 1 6 HELIX 2 AA2 PRO A 73 LEU A 80 5 8 HELIX 3 AA3 ASN A 104 GLU A 114 1 11 HELIX 4 AA4 SER A 187 GLY A 196 1 10 HELIX 5 AA5 GLN B 77 PHE B 81 5 5 HELIX 6 AA6 SER B 119 GLY B 126 1 8 HELIX 7 AA7 LYS B 181 LYS B 186 1 6 HELIX 8 AA8 THR C 84 THR C 88 5 5 HELIX 9 AA9 SER C 164 ALA C 166 5 3 HELIX 10 AB1 SER C 195 LEU C 197 5 3 HELIX 11 AB2 LYS C 209 ASN C 212 5 4 SHEET 1 AA1 2 THR A 58 CYS A 64 0 SHEET 2 AA1 2 LEU A 86 SER A 94 1 O ILE A 88 N VAL A 59 SHEET 1 AA2 2 ILE A 118 ALA A 122 0 SHEET 2 AA2 2 ARG A 256 LEU A 260 -1 O ALA A 257 N GLU A 121 SHEET 1 AA3 2 ILE A 130 ARG A 131 0 SHEET 2 AA3 2 LEU A 155 SER A 156 -1 O LEU A 155 N ARG A 131 SHEET 1 AA4 2 THR A 136 ARG A 140 0 SHEET 2 AA4 2 SER A 145 SER A 146 -1 O SER A 146 N THR A 136 SHEET 1 AA5 4 MET A 151 TRP A 153 0 SHEET 2 AA5 4 PHE A 251 PRO A 254 -1 O ALA A 253 N LYS A 152 SHEET 3 AA5 4 ALA A 176 HIS A 184 -1 N GLY A 181 O ILE A 252 SHEET 4 AA5 4 ARG A 229 LEU A 237 -1 O LEU A 237 N ALA A 176 SHEET 1 AA6 4 MET A 164 LYS A 169 0 SHEET 2 AA6 4 THR A 242 PHE A 247 -1 O PHE A 245 N LYS A 166 SHEET 3 AA6 4 VAL A 202 GLY A 205 -1 N THR A 203 O SER A 246 SHEET 4 AA6 4 GLN A 210 PHE A 213 -1 O GLN A 211 N VAL A 204 SHEET 1 AA7 4 MET B 2 SER B 5 0 SHEET 2 AA7 4 VAL B 17 ALA B 23 -1 O ARG B 22 N THR B 3 SHEET 3 AA7 4 ASP B 68 ILE B 73 -1 O LEU B 71 N ILE B 19 SHEET 4 AA7 4 PHE B 60 SER B 65 -1 N SER B 61 O THR B 72 SHEET 1 AA8 6 SER B 8 SER B 12 0 SHEET 2 AA8 6 THR B 100 LYS B 105 1 O GLU B 103 N LEU B 9 SHEET 3 AA8 6 ALA B 82 GLN B 88 -1 N ALA B 82 O VAL B 102 SHEET 4 AA8 6 LEU B 31 GLN B 36 -1 N ASN B 32 O GLN B 87 SHEET 5 AA8 6 LYS B 43 TYR B 47 -1 O LEU B 45 N TRP B 33 SHEET 6 AA8 6 SER B 51 LEU B 52 -1 O SER B 51 N TYR B 47 SHEET 1 AA9 4 SER B 8 SER B 12 0 SHEET 2 AA9 4 THR B 100 LYS B 105 1 O GLU B 103 N LEU B 9 SHEET 3 AA9 4 ALA B 82 GLN B 88 -1 N ALA B 82 O VAL B 102 SHEET 4 AA9 4 ALA B 95 PHE B 96 -1 O ALA B 95 N GLN B 88 SHEET 1 AB1 4 SER B 112 PHE B 116 0 SHEET 2 AB1 4 THR B 127 PHE B 137 -1 O LEU B 133 N PHE B 114 SHEET 3 AB1 4 TYR B 171 SER B 180 -1 O LEU B 179 N ALA B 128 SHEET 4 AB1 4 SER B 157 VAL B 161 -1 N GLN B 158 O THR B 176 SHEET 1 AB2 4 ALA B 151 LEU B 152 0 SHEET 2 AB2 4 LYS B 143 VAL B 148 -1 N VAL B 148 O ALA B 151 SHEET 3 AB2 4 VAL B 189 THR B 195 -1 O GLU B 193 N GLN B 145 SHEET 4 AB2 4 VAL B 203 ASN B 208 -1 O VAL B 203 N VAL B 194 SHEET 1 AB3 4 GLN C -1 SER C 3 0 SHEET 2 AB3 4 LEU C 14 SER C 21 -1 O THR C 17 N SER C 3 SHEET 3 AB3 4 GLN C 75 LEU C 80 -1 O LEU C 80 N LEU C 14 SHEET 4 AB3 4 VAL C 65 ASP C 70 -1 N ASP C 70 O GLN C 75 SHEET 1 AB4 6 LEU C 7 VAL C 8 0 SHEET 2 AB4 6 THR C 115 VAL C 119 1 O THR C 118 N VAL C 8 SHEET 3 AB4 6 ALA C 89 SER C 97 -1 N TYR C 91 O THR C 115 SHEET 4 AB4 6 TYR C 30 GLN C 37 -1 N ILE C 35 O TYR C 92 SHEET 5 AB4 6 LEU C 43 ILE C 49 -1 O ILE C 49 N TRP C 32 SHEET 6 AB4 6 THR C 55 TYR C 57 -1 O ASP C 56 N TYR C 48 SHEET 1 AB5 4 LEU C 7 VAL C 8 0 SHEET 2 AB5 4 THR C 115 VAL C 119 1 O THR C 118 N VAL C 8 SHEET 3 AB5 4 ALA C 89 SER C 97 -1 N TYR C 91 O THR C 115 SHEET 4 AB5 4 VAL C 110 TRP C 111 -1 O VAL C 110 N GLY C 95 SHEET 1 AB6 4 SER C 128 LEU C 132 0 SHEET 2 AB6 4 THR C 143 TYR C 153 -1 O LEU C 149 N PHE C 130 SHEET 3 AB6 4 TYR C 184 PRO C 193 -1 O LEU C 186 N VAL C 150 SHEET 4 AB6 4 VAL C 171 THR C 173 -1 N HIS C 172 O VAL C 189 SHEET 1 AB7 4 SER C 128 LEU C 132 0 SHEET 2 AB7 4 THR C 143 TYR C 153 -1 O LEU C 149 N PHE C 130 SHEET 3 AB7 4 TYR C 184 PRO C 193 -1 O LEU C 186 N VAL C 150 SHEET 4 AB7 4 VAL C 177 LEU C 178 -1 N VAL C 177 O SER C 185 SHEET 1 AB8 3 THR C 159 TRP C 162 0 SHEET 2 AB8 3 ILE C 203 HIS C 208 -1 O ASN C 205 N SER C 161 SHEET 3 AB8 3 THR C 213 ARG C 218 -1 O THR C 213 N HIS C 208 SSBOND 1 CYS A 64 CYS A 76 1555 1555 2.06 SSBOND 2 CYS A 97 CYS A 139 1555 1555 2.07 SSBOND 3 CYS B 21 CYS B 86 1555 1555 2.03 SSBOND 4 CYS B 132 CYS B 192 1555 1555 2.03 SSBOND 5 CYS C 18 CYS C 93 1555 1555 2.07 SSBOND 6 CYS C 148 CYS C 204 1555 1555 2.03 LINK ND2 ASN A 240 C1 NAG A 401 1555 1555 1.47 CISPEP 1 SER B 5 PRO B 6 0 -8.21 CISPEP 2 THR B 92 PRO B 93 0 0.62 CISPEP 3 TYR B 138 PRO B 139 0 5.41 CISPEP 4 PHE C 154 PRO C 155 0 -2.04 CISPEP 5 GLU C 156 PRO C 157 0 -3.29 CRYST1 70.983 70.983 283.728 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014088 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014088 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003525 0.00000