HEADER TRANSFERASE 10-MAY-17 5XLL TITLE DIMER FORM OF M. TUBERCULOSIS PKNI SENSOR DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PKNI; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 402-585; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: SELENOMETHIONINE SUBSTITUTED PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: PKNI, RV2914C, MTCY338.02C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DIMER, SENSOR DOMAIN, PKNI, M. TUBERCULOSIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.RAO,Q.YAN REVDAT 2 27-OCT-21 5XLL 1 REMARK REVDAT 1 16-MAY-18 5XLL 0 JRNL AUTH Q.YAN,D.JIANG,L.QIAN,Q.ZHANG,W.ZHANG,W.ZHOU,K.MI,L.GUDDAT, JRNL AUTH 2 H.YANG,Z.RAO JRNL TITL STRUCTURAL INSIGHT INTO THE ACTIVATION OF PKNI KINASE FROM JRNL TITL 2 M. TUBERCULOSIS VIA DIMERIZATION OF THE EXTRACELLULAR SENSOR JRNL TITL 3 DOMAIN. JRNL REF STRUCTURE V. 25 1286 2017 JRNL REFN ISSN 1878-4186 JRNL PMID 28712808 JRNL DOI 10.1016/J.STR.2017.06.010 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 21387 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.360 REMARK 3 FREE R VALUE TEST SET COUNT : 1047 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.0997 - 6.6767 0.99 1340 142 0.2100 0.2293 REMARK 3 2 6.6767 - 5.3017 1.00 1324 149 0.2258 0.2117 REMARK 3 3 5.3017 - 4.6321 1.00 1338 130 0.1643 0.2373 REMARK 3 4 4.6321 - 4.2089 1.00 1323 144 0.1652 0.1653 REMARK 3 5 4.2089 - 3.9074 1.00 1336 139 0.1792 0.1693 REMARK 3 6 3.9074 - 3.6771 1.00 1331 142 0.2064 0.2357 REMARK 3 7 3.6771 - 3.4930 1.00 1344 140 0.2281 0.2604 REMARK 3 8 3.4930 - 3.3410 1.00 1338 130 0.2175 0.3056 REMARK 3 9 3.3410 - 3.2124 1.00 1326 140 0.2584 0.3016 REMARK 3 10 3.2124 - 3.1016 1.00 1325 135 0.2472 0.2819 REMARK 3 11 3.1016 - 3.0046 1.00 1330 128 0.2235 0.3432 REMARK 3 12 3.0046 - 2.9187 1.00 1358 138 0.2514 0.2267 REMARK 3 13 2.9187 - 2.8419 1.00 1343 130 0.2413 0.3129 REMARK 3 14 2.8419 - 2.7726 1.00 1368 134 0.2692 0.3936 REMARK 3 15 2.7726 - 2.7095 1.00 1306 142 0.2877 0.3795 REMARK 3 16 2.7095 - 2.6519 0.01 1351 146 0.2621 0.3544 REMARK 3 17 2.6519 - 2.5988 1.00 1306 132 0.2636 0.2536 REMARK 3 18 2.5988 - 2.5498 1.00 1325 130 0.2865 0.3186 REMARK 3 19 2.5498 - 2.5043 1.00 1312 136 0.3033 0.3815 REMARK 3 20 2.5043 - 2.4618 1.00 1395 144 0.3098 0.2815 REMARK 3 21 2.4618 - 2.4221 1.00 1321 136 0.2918 0.4425 REMARK 3 22 2.4221 - 2.3848 1.00 1307 146 0.2658 0.3287 REMARK 3 23 2.3848 - 2.3498 0.01 1364 140 0.2914 0.2901 REMARK 3 24 2.3498 - 2.3167 1.00 1336 136 0.2684 0.3753 REMARK 3 25 2.3167 - 2.2854 0.01 1353 140 0.2872 0.3502 REMARK 3 26 2.2854 - 2.2557 1.00 1286 126 0.3131 0.3707 REMARK 3 27 2.2557 - 2.2275 1.00 1350 148 0.2752 0.2905 REMARK 3 28 2.2275 - 2.2007 1.00 1374 140 0.3010 0.3124 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 40.25 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2481 REMARK 3 ANGLE : 1.253 3410 REMARK 3 CHIRALITY : 0.069 387 REMARK 3 PLANARITY : 0.006 459 REMARK 3 DIHEDRAL : 14.651 920 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 403:427) REMARK 3 ORIGIN FOR THE GROUP (A): 91.7312 30.0536 3.0108 REMARK 3 T TENSOR REMARK 3 T11: 0.3481 T22: 0.3140 REMARK 3 T33: 0.4462 T12: -0.0334 REMARK 3 T13: -0.0556 T23: -0.0307 REMARK 3 L TENSOR REMARK 3 L11: 0.6407 L22: 0.6608 REMARK 3 L33: 0.8737 L12: -0.2895 REMARK 3 L13: 0.4696 L23: 0.5087 REMARK 3 S TENSOR REMARK 3 S11: 0.1901 S12: -0.1207 S13: -0.0251 REMARK 3 S21: 0.2832 S22: 0.0981 S23: -0.2330 REMARK 3 S31: 0.1408 S32: 0.0717 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 428:446) REMARK 3 ORIGIN FOR THE GROUP (A): 62.6118 43.9608 23.5022 REMARK 3 T TENSOR REMARK 3 T11: 0.4321 T22: 0.2998 REMARK 3 T33: 0.3667 T12: 0.0774 REMARK 3 T13: -0.1016 T23: 0.0538 REMARK 3 L TENSOR REMARK 3 L11: 1.5673 L22: 1.0505 REMARK 3 L33: 1.3377 L12: -0.6356 REMARK 3 L13: 1.3595 L23: -0.1366 REMARK 3 S TENSOR REMARK 3 S11: -0.1404 S12: 0.1548 S13: 0.1762 REMARK 3 S21: 0.0317 S22: 0.3229 S23: -0.0565 REMARK 3 S31: -0.2737 S32: -0.4073 S33: 0.0204 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 447:466) REMARK 3 ORIGIN FOR THE GROUP (A): 57.4528 48.3922 18.0296 REMARK 3 T TENSOR REMARK 3 T11: 0.3893 T22: 0.3937 REMARK 3 T33: 0.3515 T12: 0.1505 REMARK 3 T13: -0.0313 T23: 0.0402 REMARK 3 L TENSOR REMARK 3 L11: 1.9385 L22: 2.0065 REMARK 3 L33: 1.1697 L12: -0.8633 REMARK 3 L13: 0.2944 L23: 1.2233 REMARK 3 S TENSOR REMARK 3 S11: -0.0740 S12: 0.2708 S13: 0.0626 REMARK 3 S21: -0.5605 S22: -0.2803 S23: -0.4361 REMARK 3 S31: -0.1176 S32: 0.0171 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 467:489) REMARK 3 ORIGIN FOR THE GROUP (A): 59.3250 34.6527 22.4095 REMARK 3 T TENSOR REMARK 3 T11: 0.3569 T22: 0.4517 REMARK 3 T33: 0.5937 T12: 0.0128 REMARK 3 T13: -0.1048 T23: 0.0610 REMARK 3 L TENSOR REMARK 3 L11: 1.0960 L22: 0.8358 REMARK 3 L33: 0.6640 L12: -1.0817 REMARK 3 L13: -0.4917 L23: 0.3475 REMARK 3 S TENSOR REMARK 3 S11: 0.1097 S12: -0.1265 S13: -0.5995 REMARK 3 S21: 0.1932 S22: -0.0464 S23: 0.5000 REMARK 3 S31: -0.3592 S32: -0.4150 S33: 0.0123 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 490:507) REMARK 3 ORIGIN FOR THE GROUP (A): 70.8553 26.8603 7.9407 REMARK 3 T TENSOR REMARK 3 T11: 0.3458 T22: 0.6835 REMARK 3 T33: 0.6880 T12: 0.0684 REMARK 3 T13: -0.1185 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 0.3619 L22: 0.5496 REMARK 3 L33: 0.2434 L12: 0.3436 REMARK 3 L13: -0.2452 L23: 0.0294 REMARK 3 S TENSOR REMARK 3 S11: -0.1456 S12: 0.8624 S13: -0.2863 REMARK 3 S21: -0.0975 S22: -0.4214 S23: 0.1259 REMARK 3 S31: -0.3134 S32: -0.4141 S33: -0.0162 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 508:521) REMARK 3 ORIGIN FOR THE GROUP (A): 68.4502 40.8699 30.8792 REMARK 3 T TENSOR REMARK 3 T11: 0.5148 T22: 0.4806 REMARK 3 T33: 0.3861 T12: -0.0453 REMARK 3 T13: -0.1117 T23: 0.0337 REMARK 3 L TENSOR REMARK 3 L11: 1.5089 L22: 0.3336 REMARK 3 L33: 0.0423 L12: -0.1870 REMARK 3 L13: -0.1093 L23: -0.0684 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: -1.0428 S13: -0.4621 REMARK 3 S21: 0.2561 S22: -0.2466 S23: -0.1001 REMARK 3 S31: -0.8361 S32: 0.4567 S33: -0.0227 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 522:560) REMARK 3 ORIGIN FOR THE GROUP (A): 63.8019 36.7347 20.0149 REMARK 3 T TENSOR REMARK 3 T11: 0.2593 T22: 0.2606 REMARK 3 T33: 0.4590 T12: -0.0353 REMARK 3 T13: -0.0136 T23: 0.0400 REMARK 3 L TENSOR REMARK 3 L11: 1.6859 L22: 0.4710 REMARK 3 L33: 2.5684 L12: -0.6104 REMARK 3 L13: 1.1103 L23: -0.0881 REMARK 3 S TENSOR REMARK 3 S11: -0.2587 S12: -0.1296 S13: -0.4308 REMARK 3 S21: 0.1870 S22: 0.2714 S23: 0.0679 REMARK 3 S31: -0.0001 S32: -0.0462 S33: -0.0162 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 402:428) REMARK 3 ORIGIN FOR THE GROUP (A): 43.9739 3.0138 30.5511 REMARK 3 T TENSOR REMARK 3 T11: 0.3494 T22: 0.4207 REMARK 3 T33: 0.3405 T12: 0.0832 REMARK 3 T13: 0.0297 T23: -0.0438 REMARK 3 L TENSOR REMARK 3 L11: 0.3678 L22: 0.9063 REMARK 3 L33: 0.3326 L12: -0.3089 REMARK 3 L13: 0.0314 L23: 0.4983 REMARK 3 S TENSOR REMARK 3 S11: 0.0878 S12: -0.0036 S13: 0.2030 REMARK 3 S21: -0.1242 S22: -0.2663 S23: 0.1350 REMARK 3 S31: -0.3284 S32: -0.2397 S33: -0.0303 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 429:483) REMARK 3 ORIGIN FOR THE GROUP (A): 76.9150 22.4820 42.9562 REMARK 3 T TENSOR REMARK 3 T11: 0.3644 T22: 0.3742 REMARK 3 T33: 0.3457 T12: 0.0717 REMARK 3 T13: -0.0572 T23: 0.0375 REMARK 3 L TENSOR REMARK 3 L11: 4.4422 L22: 1.5038 REMARK 3 L33: 0.9837 L12: 0.0897 REMARK 3 L13: 1.5850 L23: 0.8717 REMARK 3 S TENSOR REMARK 3 S11: -0.1289 S12: 0.2710 S13: -0.0314 REMARK 3 S21: 0.0873 S22: 0.1032 S23: -0.3029 REMARK 3 S31: 0.0819 S32: -0.0720 S33: 0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 484:504) REMARK 3 ORIGIN FOR THE GROUP (A): 66.7956 7.3936 26.7046 REMARK 3 T TENSOR REMARK 3 T11: 0.3496 T22: 0.7365 REMARK 3 T33: 0.6875 T12: 0.1548 REMARK 3 T13: -0.0191 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 3.8677 L22: 1.0265 REMARK 3 L33: 1.2390 L12: 1.6239 REMARK 3 L13: 0.7372 L23: 0.6807 REMARK 3 S TENSOR REMARK 3 S11: -0.0165 S12: -0.5929 S13: -1.9414 REMARK 3 S21: -0.0491 S22: 0.4331 S23: -0.6297 REMARK 3 S31: 0.3221 S32: 0.0620 S33: 0.0292 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 505:521) REMARK 3 ORIGIN FOR THE GROUP (A): 68.3163 28.3535 38.6347 REMARK 3 T TENSOR REMARK 3 T11: 0.4043 T22: 0.4080 REMARK 3 T33: 0.3877 T12: 0.0837 REMARK 3 T13: 0.0096 T23: 0.0494 REMARK 3 L TENSOR REMARK 3 L11: 1.4520 L22: 0.5232 REMARK 3 L33: 0.4378 L12: 0.5226 REMARK 3 L13: 0.1993 L23: -0.2808 REMARK 3 S TENSOR REMARK 3 S11: 0.0849 S12: 0.6796 S13: 0.5795 REMARK 3 S21: 0.4414 S22: -0.0207 S23: 0.0951 REMARK 3 S31: -0.1141 S32: 0.1585 S33: 0.0001 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 522:561) REMARK 3 ORIGIN FOR THE GROUP (A): 72.6718 20.0257 36.6954 REMARK 3 T TENSOR REMARK 3 T11: 0.3241 T22: 0.4689 REMARK 3 T33: 0.3014 T12: 0.0382 REMARK 3 T13: -0.0008 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 1.1379 L22: 2.2252 REMARK 3 L33: 0.0750 L12: -0.4297 REMARK 3 L13: 0.0462 L23: 0.3661 REMARK 3 S TENSOR REMARK 3 S11: -0.1548 S12: 0.3535 S13: 0.0980 REMARK 3 S21: 0.1088 S22: 0.0248 S23: -0.0602 REMARK 3 S31: 0.0281 S32: -0.0389 S33: -0.0014 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE ENTRY CONTAINS FRIEDEL PAIRS IN REMARK 3 F_PLUS/MINUS COLUMNS AND I_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 5XLL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1300003681. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21387 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 55.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.20 REMARK 200 R MERGE FOR SHELL (I) : 0.82400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS REMARK 200 AND I_PLUS/MINUS COLUMNS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1 M SODIUM MALONATE, 0.1M HEPES, REMARK 280 0.5% V/V JEFFAMINE ED-2001, PH 7.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 68.00700 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 68.00700 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 68.00700 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 68.00700 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 68.00700 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 68.00700 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 68.00700 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 68.00700 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 68.00700 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 68.00700 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 68.00700 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 68.00700 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 68.00700 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 68.00700 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 68.00700 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 68.00700 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 68.00700 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 68.00700 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 68.00700 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 68.00700 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 68.00700 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 68.00700 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 68.00700 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 68.00700 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 68.00700 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 68.00700 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 68.00700 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 68.00700 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 68.00700 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 68.00700 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 68.00700 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 68.00700 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 68.00700 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 68.00700 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 68.00700 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 68.00700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 402 REMARK 465 ILE A 561 REMARK 465 PRO A 562 REMARK 465 ASP A 563 REMARK 465 THR A 564 REMARK 465 PRO A 565 REMARK 465 ASP A 566 REMARK 465 THR A 567 REMARK 465 THR A 568 REMARK 465 SER A 569 REMARK 465 THR A 570 REMARK 465 ALA A 571 REMARK 465 THR A 572 REMARK 465 LEU A 573 REMARK 465 THR A 574 REMARK 465 PRO A 575 REMARK 465 PRO A 576 REMARK 465 THR A 577 REMARK 465 THR A 578 REMARK 465 THR A 579 REMARK 465 ALA A 580 REMARK 465 PRO A 581 REMARK 465 GLY A 582 REMARK 465 PRO A 583 REMARK 465 GLY A 584 REMARK 465 ARG A 585 REMARK 465 GLN B 514 REMARK 465 PRO B 562 REMARK 465 ASP B 563 REMARK 465 THR B 564 REMARK 465 PRO B 565 REMARK 465 ASP B 566 REMARK 465 THR B 567 REMARK 465 THR B 568 REMARK 465 SER B 569 REMARK 465 THR B 570 REMARK 465 ALA B 571 REMARK 465 THR B 572 REMARK 465 LEU B 573 REMARK 465 THR B 574 REMARK 465 PRO B 575 REMARK 465 PRO B 576 REMARK 465 THR B 577 REMARK 465 THR B 578 REMARK 465 THR B 579 REMARK 465 ALA B 580 REMARK 465 PRO B 581 REMARK 465 GLY B 582 REMARK 465 PRO B 583 REMARK 465 GLY B 584 REMARK 465 ARG B 585 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 609 O HOH A 628 1.91 REMARK 500 OG1 THR B 465 O HOH B 601 1.99 REMARK 500 O TYR A 424 O HOH A 601 2.11 REMARK 500 OG SER B 482 O HOH B 602 2.13 REMARK 500 NH1 ARG A 510 O HOH A 602 2.14 REMARK 500 OD2 ASP B 557 O HOH B 603 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ASP A 408 NH1 ARG B 545 23555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 426 30.28 -80.54 REMARK 500 ASP A 459 101.85 -160.91 REMARK 500 SER A 499 -158.32 -170.45 REMARK 500 PRO A 513 -56.33 -28.21 REMARK 500 PRO B 426 31.81 -77.17 REMARK 500 SER B 499 -155.56 -169.90 REMARK 500 REMARK 500 REMARK: NULL DBREF 5XLL A 402 585 UNP P9WI69 PKNI_MYCTU 402 585 DBREF 5XLL B 402 585 UNP P9WI69 PKNI_MYCTU 402 585 SEQRES 1 A 184 THR ALA PRO VAL PRO LEU ASP GLY THR TYR ARG ILE GLU SEQRES 2 A 184 ILE GLN ARG SER LYS GLN THR TYR ASP TYR THR PRO THR SEQRES 3 A 184 PRO GLN PRO PRO ASP VAL ASN THR TRP TRP ALA PHE ARG SEQRES 4 A 184 THR SER CYS THR PRO THR GLU CYS LEU ALA ALA ALA THR SEQRES 5 A 184 MSE LEU ASP ASP ASN ASP HIS THR GLN ALA LYS THR PRO SEQRES 6 A 184 PRO VAL ARG PRO PHE LEU MSE GLN PHE GLY GLU GLY GLN SEQRES 7 A 184 TRP LYS SER ARG PRO GLU THR VAL GLN PHE PRO CYS VAL SEQRES 8 A 184 GLY PRO ASN GLY SER PRO SER THR GLN ALA THR THR GLN SEQRES 9 A 184 LEU LEU ALA LEU ARG PRO GLN PRO GLN GLY ASP LEU VAL SEQRES 10 A 184 GLY GLU MSE VAL VAL THR VAL HIS SER ASN GLU CYS GLY SEQRES 11 A 184 GLN GLN GLY ALA VAL ILE ARG ILE PRO ALA VAL ALA SER SEQRES 12 A 184 ARG SER GLY ASP LEU PRO PRO ALA VAL THR VAL PRO ASP SEQRES 13 A 184 PRO ALA THR ILE PRO ASP THR PRO ASP THR THR SER THR SEQRES 14 A 184 ALA THR LEU THR PRO PRO THR THR THR ALA PRO GLY PRO SEQRES 15 A 184 GLY ARG SEQRES 1 B 184 THR ALA PRO VAL PRO LEU ASP GLY THR TYR ARG ILE GLU SEQRES 2 B 184 ILE GLN ARG SER LYS GLN THR TYR ASP TYR THR PRO THR SEQRES 3 B 184 PRO GLN PRO PRO ASP VAL ASN THR TRP TRP ALA PHE ARG SEQRES 4 B 184 THR SER CYS THR PRO THR GLU CYS LEU ALA ALA ALA THR SEQRES 5 B 184 MSE LEU ASP ASP ASN ASP HIS THR GLN ALA LYS THR PRO SEQRES 6 B 184 PRO VAL ARG PRO PHE LEU MSE GLN PHE GLY GLU GLY GLN SEQRES 7 B 184 TRP LYS SER ARG PRO GLU THR VAL GLN PHE PRO CYS VAL SEQRES 8 B 184 GLY PRO ASN GLY SER PRO SER THR GLN ALA THR THR GLN SEQRES 9 B 184 LEU LEU ALA LEU ARG PRO GLN PRO GLN GLY ASP LEU VAL SEQRES 10 B 184 GLY GLU MSE VAL VAL THR VAL HIS SER ASN GLU CYS GLY SEQRES 11 B 184 GLN GLN GLY ALA VAL ILE ARG ILE PRO ALA VAL ALA SER SEQRES 12 B 184 ARG SER GLY ASP LEU PRO PRO ALA VAL THR VAL PRO ASP SEQRES 13 B 184 PRO ALA THR ILE PRO ASP THR PRO ASP THR THR SER THR SEQRES 14 B 184 ALA THR LEU THR PRO PRO THR THR THR ALA PRO GLY PRO SEQRES 15 B 184 GLY ARG MODRES 5XLL MSE A 454 MET MODIFIED RESIDUE MODRES 5XLL MSE A 473 MET MODIFIED RESIDUE MODRES 5XLL MSE A 521 MET MODIFIED RESIDUE MODRES 5XLL MSE B 454 MET MODIFIED RESIDUE MODRES 5XLL MSE B 473 MET MODIFIED RESIDUE MODRES 5XLL MSE B 521 MET MODIFIED RESIDUE HET MSE A 454 8 HET MSE A 473 8 HET MSE A 521 8 HET MSE B 454 8 HET MSE B 473 8 HET MSE B 521 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 HOH *59(H2 O) HELIX 1 AA1 GLN A 416 GLN A 420 5 5 HELIX 2 AA2 GLN B 416 GLN B 420 5 5 SHEET 1 AA1 6 TRP A 437 CYS A 443 0 SHEET 2 AA1 6 CYS A 448 MSE A 454 -1 O ALA A 451 N ARG A 440 SHEET 3 AA1 6 PHE A 471 GLY A 476 -1 O PHE A 471 N ALA A 452 SHEET 4 AA1 6 GLN A 479 SER A 482 -1 O LYS A 481 N GLN A 474 SHEET 5 AA1 6 PRO A 498 PRO A 511 -1 O LEU A 509 N TRP A 480 SHEET 6 AA1 6 GLU A 485 VAL A 492 -1 N PHE A 489 O GLN A 501 SHEET 1 AA2 7 TRP A 437 CYS A 443 0 SHEET 2 AA2 7 CYS A 448 MSE A 454 -1 O ALA A 451 N ARG A 440 SHEET 3 AA2 7 PHE A 471 GLY A 476 -1 O PHE A 471 N ALA A 452 SHEET 4 AA2 7 GLN A 479 SER A 482 -1 O LYS A 481 N GLN A 474 SHEET 5 AA2 7 PRO A 498 PRO A 511 -1 O LEU A 509 N TRP A 480 SHEET 6 AA2 7 ASP A 516 VAL A 525 -1 O VAL A 518 N ARG A 510 SHEET 7 AA2 7 VAL A 536 SER A 544 -1 O ILE A 537 N VAL A 523 SHEET 1 AA3 6 TRP B 437 CYS B 443 0 SHEET 2 AA3 6 CYS B 448 MSE B 454 -1 O THR B 453 N ALA B 438 SHEET 3 AA3 6 PHE B 471 GLY B 476 -1 O MSE B 473 N ALA B 450 SHEET 4 AA3 6 GLN B 479 SER B 482 -1 O LYS B 481 N GLN B 474 SHEET 5 AA3 6 PRO B 498 PRO B 511 -1 O LEU B 509 N TRP B 480 SHEET 6 AA3 6 GLU B 485 VAL B 492 -1 N PHE B 489 O GLN B 501 SHEET 1 AA4 7 TRP B 437 CYS B 443 0 SHEET 2 AA4 7 CYS B 448 MSE B 454 -1 O THR B 453 N ALA B 438 SHEET 3 AA4 7 PHE B 471 GLY B 476 -1 O MSE B 473 N ALA B 450 SHEET 4 AA4 7 GLN B 479 SER B 482 -1 O LYS B 481 N GLN B 474 SHEET 5 AA4 7 PRO B 498 PRO B 511 -1 O LEU B 509 N TRP B 480 SHEET 6 AA4 7 LEU B 517 VAL B 525 -1 O VAL B 518 N ARG B 510 SHEET 7 AA4 7 VAL B 536 ALA B 543 -1 O ILE B 537 N VAL B 523 SSBOND 1 CYS A 443 CYS A 448 1555 1555 2.04 SSBOND 2 CYS A 491 CYS A 530 1555 1555 2.05 SSBOND 3 CYS B 443 CYS B 448 1555 1555 2.04 SSBOND 4 CYS B 491 CYS B 530 1555 1555 2.05 LINK C THR A 453 N MSE A 454 1555 1555 1.32 LINK C MSE A 454 N LEU A 455 1555 1555 1.33 LINK C LEU A 472 N MSE A 473 1555 1555 1.33 LINK C MSE A 473 N GLN A 474 1555 1555 1.33 LINK C GLU A 520 N MSE A 521 1555 1555 1.32 LINK C MSE A 521 N VAL A 522 1555 1555 1.33 LINK C THR B 453 N MSE B 454 1555 1555 1.32 LINK C MSE B 454 N LEU B 455 1555 1555 1.33 LINK C LEU B 472 N MSE B 473 1555 1555 1.33 LINK C MSE B 473 N GLN B 474 1555 1555 1.33 LINK C GLU B 520 N MSE B 521 1555 1555 1.32 LINK C MSE B 521 N VAL B 522 1555 1555 1.33 CISPEP 1 GLN A 429 PRO A 430 0 -7.98 CISPEP 2 THR A 465 PRO A 466 0 -4.72 CISPEP 3 GLN B 429 PRO B 430 0 -6.35 CISPEP 4 THR B 465 PRO B 466 0 -2.88 CRYST1 136.014 136.014 136.014 90.00 90.00 90.00 I 2 3 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007352 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007352 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007352 0.00000