HEADER TRANSFERASE 12-MAY-17 5XLY TITLE CRYSTAL STRUCTURE OF CHER1 IN COMPLEX WITH C-DI-GMP-BOUND MAPZ COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHEMOTAXIS PROTEIN METHYLTRANSFERASE 1; COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.1.80; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CYCLIC DIGUANOSINE MONOPHOSPHATE-BINDING PROTEIN PA4608; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: C-DI-GMP-BINDING PROTEIN PA4608,PILZ DOMAIN-CONTAINING COMPND 10 PROTEIN PA4608; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / DSM SOURCE 3 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SOURCE 4 ORGANISM_TAXID: 208964; SOURCE 5 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 6 / 1C / PRS 101 / PAO1; SOURCE 7 GENE: CHER1, PA3348; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / DSM SOURCE 12 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SOURCE 13 ORGANISM_TAXID: 208964; SOURCE 14 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 15 / 1C / PRS 101 / PAO1; SOURCE 16 GENE: PA4608; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SIGNALING, METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.YUAN,Y.ZHU,L.GU REVDAT 3 27-MAR-24 5XLY 1 HETSYN REVDAT 2 30-AUG-17 5XLY 1 JRNL REVDAT 1 23-AUG-17 5XLY 0 JRNL AUTH Y.ZHU,Z.YUAN,L.GU JRNL TITL STRUCTURAL BASIS FOR THE REGULATION OF CHEMOTAXIS BY MAPZ IN JRNL TITL 2 THE PRESENCE OF C-DI-GMP JRNL REF ACTA CRYSTALLOGR D STRUCT V. 73 683 2017 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 28777083 JRNL DOI 10.1107/S2059798317009998 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2719 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 44834 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2256 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.4510 - 4.4262 0.94 2645 128 0.1986 0.2103 REMARK 3 2 4.4262 - 3.5200 0.98 2683 152 0.1753 0.1756 REMARK 3 3 3.5200 - 3.0770 0.98 2683 158 0.1870 0.2160 REMARK 3 4 3.0770 - 2.7966 0.99 2699 144 0.2039 0.2259 REMARK 3 5 2.7966 - 2.5966 0.99 2702 125 0.2120 0.2079 REMARK 3 6 2.5966 - 2.4439 0.99 2691 133 0.2139 0.2465 REMARK 3 7 2.4439 - 2.3217 0.98 2648 151 0.2011 0.2580 REMARK 3 8 2.3217 - 2.2208 0.98 2679 131 0.2101 0.2130 REMARK 3 9 2.2208 - 2.1354 0.98 2655 139 0.2098 0.2477 REMARK 3 10 2.1354 - 2.0618 0.98 2667 159 0.2187 0.2497 REMARK 3 11 2.0618 - 1.9974 0.98 2617 168 0.2267 0.2502 REMARK 3 12 1.9974 - 1.9403 0.98 2680 120 0.2399 0.2780 REMARK 3 13 1.9403 - 1.8893 0.98 2643 135 0.2485 0.2592 REMARK 3 14 1.8893 - 1.8432 0.98 2623 151 0.2482 0.3066 REMARK 3 15 1.8432 - 1.8014 0.97 2645 128 0.2703 0.3093 REMARK 3 16 1.8014 - 1.7630 0.96 2618 134 0.2992 0.3524 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3292 REMARK 3 ANGLE : 0.667 4465 REMARK 3 CHIRALITY : 0.045 486 REMARK 3 PLANARITY : 0.003 564 REMARK 3 DIHEDRAL : 8.158 2806 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XLY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1300003534. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44834 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 68.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% 2-PROPANOL 0.1M SODIUM CITRATE 5.0 REMARK 280 10% PEG 10000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 30.49097 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.70500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.49908 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 30.49097 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.70500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 51.49908 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 310 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 615 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ASN A 98 REMARK 465 GLY A 99 REMARK 465 GLY A 100 REMARK 465 LEU A 275 REMARK 465 GLU A 276 REMARK 465 HIS A 277 REMARK 465 HIS A 278 REMARK 465 HIS A 279 REMARK 465 HIS A 280 REMARK 465 HIS A 281 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASP B 3 REMARK 465 ASP B 125 REMARK 465 LEU B 126 REMARK 465 GLU B 127 REMARK 465 HIS B 128 REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 465 HIS B 131 REMARK 465 HIS B 132 REMARK 465 HIS B 133 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 101 CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 56 O HOH A 301 1.55 REMARK 500 O HOH B 337 O HOH B 408 1.84 REMARK 500 O HOH A 526 O HOH A 559 1.86 REMARK 500 NH1 ARG B 28 O HOH B 301 1.89 REMARK 500 O HOH B 348 O HOH B 449 1.95 REMARK 500 O HOH A 490 O HOH A 592 1.96 REMARK 500 O HOH B 322 O HOH B 394 1.97 REMARK 500 O HOH A 523 O HOH A 601 1.97 REMARK 500 O HOH B 354 O HOH B 413 1.98 REMARK 500 O HOH A 478 O HOH A 609 1.98 REMARK 500 O HOH A 581 O HOH A 613 1.99 REMARK 500 O HOH A 499 O HOH B 408 1.99 REMARK 500 N ALA A 252 O HOH A 302 2.00 REMARK 500 O HOH B 320 O HOH B 459 2.03 REMARK 500 NH2 ARG B 55 O HOH B 302 2.04 REMARK 500 O HOH B 393 O HOH B 447 2.05 REMARK 500 NE2 GLN A 139 O HOH A 303 2.06 REMARK 500 O HOH B 302 O HOH B 431 2.06 REMARK 500 NE2 GLN A 88 O HOH A 304 2.08 REMARK 500 OE1 GLU B 110 O HOH B 303 2.08 REMARK 500 NH2 ARG B 28 O HOH B 304 2.09 REMARK 500 O HOH B 415 O HOH B 439 2.09 REMARK 500 O HOH A 532 O HOH A 555 2.11 REMARK 500 O HOH A 367 O HOH A 412 2.12 REMARK 500 O HOH A 509 O HOH A 528 2.12 REMARK 500 O HOH A 549 O HOH A 551 2.14 REMARK 500 O HOH A 375 O HOH A 466 2.15 REMARK 500 OE1 GLN A 41 O HOH A 305 2.16 REMARK 500 O HOH B 315 O HOH B 413 2.16 REMARK 500 O HOH A 527 O HOH A 594 2.17 REMARK 500 O HOH B 334 O HOH B 403 2.19 REMARK 500 O HOH B 383 O HOH B 462 2.19 REMARK 500 O HOH B 372 O HOH B 384 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 600 O HOH A 618 4555 2.16 REMARK 500 O HOH A 560 O HOH A 624 4555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 55 N - CA - C ANGL. DEV. = -18.3 DEGREES REMARK 500 LEU A 131 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 56 119.02 110.39 REMARK 500 GLN A 57 -11.13 111.50 REMARK 500 ASP A 79 -5.89 79.34 REMARK 500 THR A 80 -56.69 66.60 REMARK 500 LYS A 96 70.68 -69.21 REMARK 500 SER A 111 -127.10 54.91 REMARK 500 ASN A 130 55.16 -146.76 REMARK 500 LEU A 131 -158.52 53.53 REMARK 500 HIS B 39 23.44 -142.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 627 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 628 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH B 481 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH B 482 DISTANCE = 6.35 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C2E B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C2E B 202 DBREF 5XLY A 1 274 UNP O87131 CHER1_PSEAE 1 274 DBREF 5XLY B 1 125 UNP Q9HVI1 CDGBP_PSEAE 1 125 SEQADV 5XLY LEU A 275 UNP O87131 EXPRESSION TAG SEQADV 5XLY GLU A 276 UNP O87131 EXPRESSION TAG SEQADV 5XLY HIS A 277 UNP O87131 EXPRESSION TAG SEQADV 5XLY HIS A 278 UNP O87131 EXPRESSION TAG SEQADV 5XLY HIS A 279 UNP O87131 EXPRESSION TAG SEQADV 5XLY HIS A 280 UNP O87131 EXPRESSION TAG SEQADV 5XLY HIS A 281 UNP O87131 EXPRESSION TAG SEQADV 5XLY LEU B 126 UNP Q9HVI1 EXPRESSION TAG SEQADV 5XLY GLU B 127 UNP Q9HVI1 EXPRESSION TAG SEQADV 5XLY HIS B 128 UNP Q9HVI1 EXPRESSION TAG SEQADV 5XLY HIS B 129 UNP Q9HVI1 EXPRESSION TAG SEQADV 5XLY HIS B 130 UNP Q9HVI1 EXPRESSION TAG SEQADV 5XLY HIS B 131 UNP Q9HVI1 EXPRESSION TAG SEQADV 5XLY HIS B 132 UNP Q9HVI1 EXPRESSION TAG SEQADV 5XLY HIS B 133 UNP Q9HVI1 EXPRESSION TAG SEQRES 1 A 281 MET SER ALA ALA ASN ALA ASP PHE GLU LEU PHE ARG VAL SEQRES 2 A 281 PHE LEU GLU LYS THR CYS GLY ILE VAL LEU GLY SER ASN SEQRES 3 A 281 LYS GLN TYR LEU VAL SER SER ARG LEU ASN LYS LEU MET SEQRES 4 A 281 GLU GLN GLN GLY ILE LYS SER LEU GLY GLU LEU VAL GLN SEQRES 5 A 281 ARG ILE GLN THR GLN ARG GLY GLY LEU ARG GLU MET VAL SEQRES 6 A 281 VAL ASP ALA MET THR THR ASN GLU THR LEU TRP PHE ARG SEQRES 7 A 281 ASP THR TYR PRO PHE GLU VAL LEU LYS GLN ARG VAL LEU SEQRES 8 A 281 PRO GLU LEU ILE LYS ALA ASN GLY GLY GLN ARG LEU ARG SEQRES 9 A 281 ILE TRP SER ALA ALA CYS SER SER GLY GLN GLU PRO TYR SEQRES 10 A 281 SER LEU SER MET ALA ILE ASP GLU PHE GLU LYS THR ASN SEQRES 11 A 281 LEU GLY GLN LEU LYS ALA GLY VAL GLN ILE VAL ALA THR SEQRES 12 A 281 ASP LEU SER GLY SER MET LEU THR ALA ALA LYS ALA GLY SEQRES 13 A 281 GLU TYR ASP THR LEU ALA MET GLY ARG GLY LEU SER PRO SEQRES 14 A 281 GLU ARG LEU GLN ARG TYR PHE ASP ALA LYS GLY PRO GLY SEQRES 15 A 281 ARG TRP ALA VAL LYS PRO ALA ILE ARG SER ARG VAL GLU SEQRES 16 A 281 PHE ARG ALA LEU ASN LEU LEU ASP SER TYR ALA SER LEU SEQRES 17 A 281 GLY LYS PHE ASP MET VAL PHE CYS ARG ASN VAL LEU ILE SEQRES 18 A 281 TYR PHE SER ALA GLU VAL LYS ARG ASP ILE LEU LEU ARG SEQRES 19 A 281 ILE HIS GLY THR LEU LYS PRO GLY GLY TYR LEU PHE LEU SEQRES 20 A 281 GLY ALA SER GLU ALA LEU ASN ASN LEU PRO ASP HIS TYR SEQRES 21 A 281 GLN MET VAL GLN CYS SER PRO GLY ILE ILE TYR ARG ALA SEQRES 22 A 281 LYS LEU GLU HIS HIS HIS HIS HIS SEQRES 1 B 133 MET SER ASP GLN HIS ASP GLU ARG ARG ARG PHE HIS ARG SEQRES 2 B 133 ILE ALA PHE ASP ALA ASP SER GLU ILE LEU GLN GLY GLU SEQRES 3 B 133 ARG ARG TRP GLU VAL LEU LEU HIS ASP VAL SER LEU HIS SEQRES 4 B 133 GLY ILE LEU VAL GLY GLN PRO GLN ASP TRP ASN GLY ASP SEQRES 5 B 133 PRO GLN ARG PRO PHE GLU ALA ARG LEU TYR LEU GLY LEU SEQRES 6 B 133 ASP VAL LEU ILE ARG MET GLU ILE SER LEU ALA TRP ALA SEQRES 7 B 133 ARG ASP GLY LEU LEU GLY PHE GLU CYS GLN HIS ILE ASP SEQRES 8 B 133 LEU ASP SER ILE SER HIS LEU ARG ARG LEU VAL GLU LEU SEQRES 9 B 133 ASN LEU GLY ASP GLU GLU LEU LEU GLU ARG GLU LEU ALA SEQRES 10 B 133 LEU LEU VAL SER ALA HIS ASP ASP LEU GLU HIS HIS HIS SEQRES 11 B 133 HIS HIS HIS HET C2E B 201 46 HET C2E B 202 46 HETNAM C2E 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10, HETNAM 2 C2E 12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3, HETNAM 3 C2E 2-D:3',2'-J][1,3,7,9,2, HETNAM 4 C2E 8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO- HETNAM 5 C2E 1,9-DIHYDRO-6H-PURIN-6-ONE) HETSYN C2E C-DI-GMP; CYCLIC DIGUANOSINE MONOPHOSPHATE FORMUL 3 C2E 2(C20 H24 N10 O14 P2) FORMUL 5 HOH *510(H2 O) HELIX 1 AA1 ASN A 5 GLY A 20 1 16 HELIX 2 AA2 LYS A 27 GLY A 43 1 17 HELIX 3 AA3 SER A 46 ILE A 54 1 9 HELIX 4 AA4 GLY A 60 THR A 70 1 11 HELIX 5 AA5 THR A 80 ARG A 89 1 10 HELIX 6 AA6 ARG A 89 LYS A 96 1 8 HELIX 7 AA7 GLY A 113 ASN A 130 1 18 HELIX 8 AA8 GLY A 147 GLY A 156 1 10 HELIX 9 AA9 THR A 160 GLY A 164 1 5 HELIX 10 AB1 SER A 168 TYR A 175 1 8 HELIX 11 AB2 LYS A 187 ARG A 193 1 7 HELIX 12 AB3 TYR A 205 GLY A 209 5 5 HELIX 13 AB4 VAL A 219 PHE A 223 5 5 HELIX 14 AB5 SER A 224 THR A 238 1 15 HELIX 15 AB6 LEU B 92 GLY B 107 1 16 HELIX 16 AB7 ASP B 108 SER B 121 1 14 SHEET 1 AA1 5 ILE A 21 VAL A 22 0 SHEET 2 AA1 5 LEU B 82 ASP B 91 1 O ILE B 90 N VAL A 22 SHEET 3 AA1 5 GLY B 40 GLY B 44 -1 N VAL B 43 O LEU B 83 SHEET 4 AA1 5 LEU B 33 SER B 37 -1 N HIS B 34 O LEU B 42 SHEET 5 AA1 5 ILE B 14 ALA B 15 -1 N ILE B 14 O VAL B 36 SHEET 1 AA2 6 ILE A 21 VAL A 22 0 SHEET 2 AA2 6 LEU B 82 ASP B 91 1 O ILE B 90 N VAL A 22 SHEET 3 AA2 6 VAL B 67 ARG B 79 -1 N GLU B 72 O HIS B 89 SHEET 4 AA2 6 PHE B 57 LEU B 63 -1 N PHE B 57 O ILE B 73 SHEET 5 AA2 6 ASP B 19 GLN B 24 -1 N ASP B 19 O TYR B 62 SHEET 6 AA2 6 ARG B 27 VAL B 31 -1 O TRP B 29 N ILE B 22 SHEET 1 AA3 7 VAL A 194 ALA A 198 0 SHEET 2 AA3 7 VAL A 138 ASP A 144 1 N ILE A 140 O GLU A 195 SHEET 3 AA3 7 LEU A 103 ALA A 108 1 N ILE A 105 O VAL A 141 SHEET 4 AA3 7 PHE A 211 PHE A 215 1 O PHE A 215 N TRP A 106 SHEET 5 AA3 7 LEU A 239 PHE A 246 1 O PHE A 246 N VAL A 214 SHEET 6 AA3 7 ILE A 269 ALA A 273 -1 O ALA A 273 N GLY A 243 SHEET 7 AA3 7 TYR A 260 GLN A 264 -1 N VAL A 263 O ILE A 270 SHEET 1 AA4 3 GLU A 157 ASP A 159 0 SHEET 2 AA4 3 ARG A 183 VAL A 186 -1 O TRP A 184 N TYR A 158 SHEET 3 AA4 3 PHE A 176 ALA A 178 -1 N ASP A 177 O ALA A 185 CISPEP 1 THR A 56 GLN A 57 0 3.87 CISPEP 2 SER A 266 PRO A 267 0 -5.04 SITE 1 AC1 26 PRO A 181 GLU A 195 ARG A 197 SER A 207 SITE 2 AC1 26 HOH A 389 GLN B 4 HIS B 5 GLU B 7 SITE 3 AC1 26 ARG B 9 ARG B 13 TRP B 77 ARG B 79 SITE 4 AC1 26 C2E B 202 HOH B 331 HOH B 345 HOH B 350 SITE 5 AC1 26 HOH B 372 HOH B 374 HOH B 384 HOH B 396 SITE 6 AC1 26 HOH B 400 HOH B 401 HOH B 402 HOH B 409 SITE 7 AC1 26 HOH B 410 HOH B 424 SITE 1 AC2 25 GLN B 4 HIS B 5 GLU B 7 ARG B 9 SITE 2 AC2 25 ARG B 10 ARG B 13 ASP B 35 VAL B 36 SITE 3 AC2 25 SER B 37 HIS B 39 GLY B 40 ILE B 41 SITE 4 AC2 25 LEU B 42 TRP B 77 PHE B 85 GLU B 86 SITE 5 AC2 25 C2E B 201 HOH B 319 HOH B 330 HOH B 331 SITE 6 AC2 25 HOH B 380 HOH B 384 HOH B 392 HOH B 415 SITE 7 AC2 25 HOH B 419 CRYST1 79.440 57.410 104.639 90.00 100.16 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012588 0.000000 0.002255 0.00000 SCALE2 0.000000 0.017419 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009709 0.00000