HEADER METAL BINDING PROTEIN 12-MAY-17 5XM5 TITLE CRYSTAL STRUCTURE OF ZINC BINDING PROTEIN ZINT AT 1.49 ANGSTROM FROM TITLE 2 E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: METAL-BINDING PROTEIN ZINT; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUE 24-216; COMPND 5 SYNONYM: CADMIUM-INDUCED PROTEIN ZINT; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: ZINT, YODA, B1973, JW1956; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS ZINC BINDING PROTEIN, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.CHEN,L.WANG,J.GUO,Y.XU REVDAT 3 22-NOV-23 5XM5 1 LINK REVDAT 2 04-DEC-19 5XM5 1 REMARK REVDAT 1 31-MAY-17 5XM5 0 JRNL AUTH J.CHEN,L.WANG,J.GUO,Y.XU JRNL TITL CRYSTAL STRUCTURE OF ZINC BINDING PROTEIN ZINT AT 1.49 JRNL TITL 2 ANGSTROM FROM E. COLI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 3 NUMBER OF REFLECTIONS : 56913 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.530 REMARK 3 FREE R VALUE TEST SET COUNT : 2008 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.2348 - 3.5978 0.95 4257 158 0.1471 0.1710 REMARK 3 2 3.5978 - 2.8563 0.98 4299 157 0.1592 0.2098 REMARK 3 3 2.8563 - 2.4954 0.97 4241 155 0.1710 0.2337 REMARK 3 4 2.4954 - 2.2673 0.96 4191 149 0.1657 0.2515 REMARK 3 5 2.2673 - 2.1049 0.95 4178 153 0.1666 0.2266 REMARK 3 6 2.1049 - 1.9808 0.95 4108 153 0.1725 0.2477 REMARK 3 7 1.9808 - 1.8816 0.93 4029 148 0.1909 0.2736 REMARK 3 8 1.8816 - 1.7997 0.91 3986 141 0.2052 0.2644 REMARK 3 9 1.7997 - 1.7304 0.88 3842 141 0.2187 0.2991 REMARK 3 10 1.7304 - 1.6707 0.88 3806 143 0.2354 0.3321 REMARK 3 11 1.6707 - 1.6185 0.86 3741 136 0.2462 0.3286 REMARK 3 12 1.6185 - 1.5722 0.83 3574 129 0.2656 0.3100 REMARK 3 13 1.5722 - 1.5308 0.80 3499 128 0.3048 0.3722 REMARK 3 14 1.5308 - 1.4935 0.73 3154 117 0.3287 0.3454 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3101 REMARK 3 ANGLE : 1.249 4190 REMARK 3 CHIRALITY : 0.074 430 REMARK 3 PLANARITY : 0.006 543 REMARK 3 DIHEDRAL : 13.849 1140 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5XM5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1300003754. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : RIGAKU REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56913 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.493 REMARK 200 RESOLUTION RANGE LOW (A) : 31.228 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3190 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.5 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 16.37 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4AW8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22.5%(W/V) POLYETHYLENE GLYCOL 4000, REMARK 280 0.135M AMMONIUM ACETATE, AND 0.1M SODIUM ACETATE TRIHYDRATE (PH REMARK 280 4.6), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.86200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 1 REMARK 465 GLY A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 SER A 5 REMARK 465 HIS A 6 REMARK 465 HIS B 1 REMARK 465 GLY B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 SER B 5 REMARK 465 HIS B 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 52 CG OD1 OD2 REMARK 470 ASN A 98 CG OD1 ND2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 GLU A 184 CG CD OE1 OE2 REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 ASP B 52 CG OD1 OD2 REMARK 470 LYS B 116 CG CD CE NZ REMARK 470 SER B 183 OG REMARK 470 GLU B 184 CG CD OE1 OE2 REMARK 470 GLU B 185 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H LYS B 129 O HOH B 305 1.41 REMARK 500 O HOH B 483 O HOH B 491 1.87 REMARK 500 O HOH B 486 O HOH B 521 1.87 REMARK 500 O HOH A 460 O HOH A 552 1.96 REMARK 500 O CYS B 128 O HOH B 301 1.97 REMARK 500 O HOH B 471 O HOH B 495 1.99 REMARK 500 O HOH A 446 O HOH A 487 2.00 REMARK 500 O HOH A 420 O HOH A 502 2.00 REMARK 500 O HOH B 457 O HOH B 504 2.01 REMARK 500 O HOH B 432 O HOH B 448 2.01 REMARK 500 O HOH A 557 O HOH A 563 2.02 REMARK 500 OD1 ASP B 161 O HOH B 302 2.02 REMARK 500 O HOH A 394 O HOH A 490 2.02 REMARK 500 OD1 ASP B 72 O HOH B 303 2.02 REMARK 500 O HOH A 357 O HOH A 451 2.04 REMARK 500 O HOH A 301 O HOH A 469 2.05 REMARK 500 O HOH B 350 O HOH B 387 2.05 REMARK 500 O HOH A 532 O HOH A 579 2.07 REMARK 500 NE2 GLN A 28 O HOH A 301 2.07 REMARK 500 O HOH B 425 O HOH B 463 2.08 REMARK 500 O HOH B 309 O HOH B 458 2.10 REMARK 500 O HOH A 561 O HOH B 502 2.11 REMARK 500 OG SER B 152 O HOH B 304 2.11 REMARK 500 O HOH B 320 O HOH B 482 2.13 REMARK 500 O HOH B 417 O HOH B 511 2.15 REMARK 500 O HOH B 320 O HOH B 474 2.16 REMARK 500 O HOH A 546 O HOH A 571 2.17 REMARK 500 O HOH A 505 O HOH A 576 2.18 REMARK 500 O HOH A 409 O HOH A 524 2.18 REMARK 500 O HOH A 451 O HOH A 501 2.18 REMARK 500 OE1 GLN A 28 O HOH A 302 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 503 O HOH A 521 1455 1.82 REMARK 500 O HOH A 420 O HOH B 448 1554 1.87 REMARK 500 O HOH A 498 O HOH A 528 2356 2.01 REMARK 500 O HOH A 488 O HOH B 362 1455 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 97 -124.73 55.47 REMARK 500 ASP A 143 27.53 -146.66 REMARK 500 ARG A 149 136.83 -174.53 REMARK 500 ASN B 97 -138.86 53.07 REMARK 500 ASP B 143 24.68 -149.16 REMARK 500 ARG B 149 137.38 -179.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 59 O REMARK 620 2 ASP A 62 O 87.8 REMARK 620 3 LYS A 65 O 100.9 88.8 REMARK 620 4 HOH A 430 O 79.3 99.2 172.0 REMARK 620 5 HOH A 494 O 154.7 117.3 83.5 92.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 144 NE2 REMARK 620 2 HIS A 153 NE2 101.6 REMARK 620 3 HIS A 155 NE2 102.4 94.5 REMARK 620 4 HOH A 460 O 90.9 97.1 160.2 REMARK 620 5 HOH A 480 O 160.7 87.9 93.4 71.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 206 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 460 O REMARK 620 2 HOH A 480 O 53.2 REMARK 620 3 HOH A 556 O 72.6 49.1 REMARK 620 4 HOH A 564 O 123.3 114.8 67.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 59 O REMARK 620 2 ASP B 62 O 87.7 REMARK 620 3 LYS B 65 O 102.6 83.7 REMARK 620 4 HOH B 435 O 80.6 98.4 176.3 REMARK 620 5 HOH B 458 O 163.9 104.4 89.4 87.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 144 NE2 REMARK 620 2 HIS B 153 NE2 103.2 REMARK 620 3 HIS B 155 NE2 100.3 94.7 REMARK 620 4 HOH B 385 O 92.8 164.1 81.9 REMARK 620 5 HOH B 417 O 89.8 95.7 163.5 84.6 REMARK 620 6 HOH B 457 O 157.3 91.4 95.6 73.5 71.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 204 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 385 O REMARK 620 2 HOH B 403 O 152.0 REMARK 620 3 HOH B 504 O 61.6 95.3 REMARK 620 4 HOH B 516 O 91.7 95.9 136.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 205 DBREF 5XM5 A 1 193 UNP P76344 ZINT_ECOLI 24 216 DBREF 5XM5 B 1 193 UNP P76344 ZINT_ECOLI 24 216 SEQRES 1 A 193 HIS GLY HIS HIS SER HIS GLY LYS PRO LEU THR GLU VAL SEQRES 2 A 193 GLU GLN LYS ALA ALA ASN GLY VAL PHE ASP ASP ALA ASN SEQRES 3 A 193 VAL GLN ASN ARG THR LEU SER ASP TRP ASP GLY VAL TRP SEQRES 4 A 193 GLN SER VAL TYR PRO LEU LEU GLN SER GLY LYS LEU ASP SEQRES 5 A 193 PRO VAL PHE GLN LYS LYS ALA ASP ALA ASP LYS THR LYS SEQRES 6 A 193 THR PHE ALA GLU ILE LYS ASP TYR TYR HIS LYS GLY TYR SEQRES 7 A 193 ALA THR ASP ILE GLU MET ILE GLY ILE GLU ASP GLY ILE SEQRES 8 A 193 VAL GLU PHE HIS ARG ASN ASN GLU THR THR SER CYS LYS SEQRES 9 A 193 TYR ASP TYR ASP GLY TYR LYS ILE LEU THR TYR LYS SER SEQRES 10 A 193 GLY LYS LYS GLY VAL ARG TYR LEU PHE GLU CYS LYS ASP SEQRES 11 A 193 PRO GLU SER LYS ALA PRO LYS TYR ILE GLN PHE SER ASP SEQRES 12 A 193 HIS ILE ILE ALA PRO ARG LYS SER SER HIS PHE HIS ILE SEQRES 13 A 193 PHE MET GLY ASN ASP SER GLN GLN SER LEU LEU ASN GLU SEQRES 14 A 193 MET GLU ASN TRP PRO THR TYR TYR PRO TYR GLN LEU SER SEQRES 15 A 193 SER GLU GLU VAL VAL GLU GLU MET MET SER HIS SEQRES 1 B 193 HIS GLY HIS HIS SER HIS GLY LYS PRO LEU THR GLU VAL SEQRES 2 B 193 GLU GLN LYS ALA ALA ASN GLY VAL PHE ASP ASP ALA ASN SEQRES 3 B 193 VAL GLN ASN ARG THR LEU SER ASP TRP ASP GLY VAL TRP SEQRES 4 B 193 GLN SER VAL TYR PRO LEU LEU GLN SER GLY LYS LEU ASP SEQRES 5 B 193 PRO VAL PHE GLN LYS LYS ALA ASP ALA ASP LYS THR LYS SEQRES 6 B 193 THR PHE ALA GLU ILE LYS ASP TYR TYR HIS LYS GLY TYR SEQRES 7 B 193 ALA THR ASP ILE GLU MET ILE GLY ILE GLU ASP GLY ILE SEQRES 8 B 193 VAL GLU PHE HIS ARG ASN ASN GLU THR THR SER CYS LYS SEQRES 9 B 193 TYR ASP TYR ASP GLY TYR LYS ILE LEU THR TYR LYS SER SEQRES 10 B 193 GLY LYS LYS GLY VAL ARG TYR LEU PHE GLU CYS LYS ASP SEQRES 11 B 193 PRO GLU SER LYS ALA PRO LYS TYR ILE GLN PHE SER ASP SEQRES 12 B 193 HIS ILE ILE ALA PRO ARG LYS SER SER HIS PHE HIS ILE SEQRES 13 B 193 PHE MET GLY ASN ASP SER GLN GLN SER LEU LEU ASN GLU SEQRES 14 B 193 MET GLU ASN TRP PRO THR TYR TYR PRO TYR GLN LEU SER SEQRES 15 B 193 SER GLU GLU VAL VAL GLU GLU MET MET SER HIS HET ZN A 201 1 HET ZN A 202 1 HET ZN A 203 1 HET NA A 204 1 HET NA A 205 1 HET NA A 206 1 HET ZN B 201 1 HET ZN B 202 1 HET ZN B 203 1 HET NA B 204 1 HET NA B 205 1 HETNAM ZN ZINC ION HETNAM NA SODIUM ION FORMUL 3 ZN 6(ZN 2+) FORMUL 6 NA 5(NA 1+) FORMUL 14 HOH *519(H2 O) HELIX 1 AA1 THR A 11 ASN A 19 1 9 HELIX 2 AA2 ASP A 23 VAL A 27 5 5 HELIX 3 AA3 THR A 31 ASP A 36 5 6 HELIX 4 AA4 VAL A 42 SER A 48 1 7 HELIX 5 AA5 LEU A 51 ASP A 62 1 12 HELIX 6 AA6 THR A 66 ALA A 79 1 14 HELIX 7 AA7 SER A 162 ASN A 168 1 7 HELIX 8 AA8 SER A 182 HIS A 193 1 12 HELIX 9 AA9 THR B 11 ASN B 19 1 9 HELIX 10 AB1 ASP B 23 VAL B 27 5 5 HELIX 11 AB2 THR B 31 ASP B 36 5 6 HELIX 12 AB3 VAL B 42 SER B 48 1 7 HELIX 13 AB4 LEU B 51 ASP B 62 1 12 HELIX 14 AB5 THR B 66 ALA B 79 1 14 HELIX 15 AB6 SER B 162 ASN B 168 1 7 HELIX 16 AB7 SER B 182 SER B 192 1 11 SHEET 1 AA1 9 GLU A 99 LYS A 104 0 SHEET 2 AA1 9 ILE A 91 ARG A 96 -1 N ARG A 96 O GLU A 99 SHEET 3 AA1 9 MET A 84 GLU A 88 -1 N GLY A 86 O GLU A 93 SHEET 4 AA1 9 GLY A 37 SER A 41 -1 N GLY A 37 O ILE A 87 SHEET 5 AA1 9 THR A 175 PRO A 178 -1 O TYR A 177 N GLN A 40 SHEET 6 AA1 9 PHE A 154 GLY A 159 -1 N PHE A 154 O TYR A 176 SHEET 7 AA1 9 TYR A 138 SER A 142 -1 N TYR A 138 O GLY A 159 SHEET 8 AA1 9 LYS A 120 GLU A 127 -1 N PHE A 126 O ILE A 139 SHEET 9 AA1 9 ASP A 106 THR A 114 -1 N LEU A 113 O GLY A 121 SHEET 1 AA2 9 GLU B 99 LYS B 104 0 SHEET 2 AA2 9 ILE B 91 ARG B 96 -1 N PHE B 94 O THR B 101 SHEET 3 AA2 9 ILE B 82 GLU B 88 -1 N GLY B 86 O GLU B 93 SHEET 4 AA2 9 GLY B 37 SER B 41 -1 N TRP B 39 O ILE B 85 SHEET 5 AA2 9 THR B 175 PRO B 178 -1 O TYR B 177 N GLN B 40 SHEET 6 AA2 9 PHE B 154 GLY B 159 -1 N PHE B 154 O TYR B 176 SHEET 7 AA2 9 TYR B 138 SER B 142 -1 N TYR B 138 O GLY B 159 SHEET 8 AA2 9 LYS B 120 GLU B 127 -1 N TYR B 124 O PHE B 141 SHEET 9 AA2 9 ASP B 106 THR B 114 -1 N ASP B 106 O GLU B 127 SSBOND 1 CYS A 103 CYS A 128 1555 1555 2.07 SSBOND 2 CYS B 103 CYS B 128 1555 1555 2.06 LINK O ALA A 59 ZN ZN A 201 1555 1555 2.29 LINK O ASP A 62 ZN ZN A 201 1555 1555 2.35 LINK O LYS A 65 ZN ZN A 201 1555 1555 2.36 LINK NE2 HIS A 144 ZN ZN A 203 1555 1555 2.07 LINK NE2 HIS A 153 ZN ZN A 203 1555 1555 2.25 LINK NE2 HIS A 155 ZN ZN A 203 1555 1555 2.09 LINK ZN ZN A 201 O HOH A 430 1555 1555 2.30 LINK ZN ZN A 201 O HOH A 494 1555 1555 2.41 LINK ZN ZN A 203 O HOH A 460 1555 1555 2.16 LINK ZN ZN A 203 O HOH A 480 1555 1555 2.21 LINK NA NA A 205 O HOH A 508 1555 1555 2.90 LINK NA NA A 206 O HOH A 460 1555 1555 2.82 LINK NA NA A 206 O HOH A 480 1555 1555 2.86 LINK NA NA A 206 O HOH A 556 1555 1555 2.33 LINK NA NA A 206 O HOH A 564 1555 1555 1.90 LINK O ALA B 59 ZN ZN B 202 1555 1555 2.39 LINK O ASP B 62 ZN ZN B 202 1555 1555 2.39 LINK O LYS B 65 ZN ZN B 202 1555 1555 2.25 LINK NE2 HIS B 144 ZN ZN B 201 1555 1555 2.07 LINK NE2 HIS B 153 ZN ZN B 201 1555 1555 2.10 LINK ND1 HIS B 153 ZN ZN B 203 1555 1555 2.67 LINK NE2 HIS B 155 ZN ZN B 201 1555 1555 2.08 LINK ZN ZN B 201 O HOH B 385 1555 1555 2.24 LINK ZN ZN B 201 O HOH B 417 1555 1555 2.11 LINK ZN ZN B 201 O HOH B 457 1555 1555 2.31 LINK ZN ZN B 202 O HOH B 435 1555 1555 2.32 LINK ZN ZN B 202 O HOH B 458 1555 1555 2.30 LINK NA NA B 204 O HOH B 385 1555 1555 1.92 LINK NA NA B 204 O HOH B 403 1555 1555 2.80 LINK NA NA B 204 O HOH B 504 1555 1555 2.32 LINK NA NA B 204 O HOH B 516 1555 1555 2.91 SITE 1 AC1 6 ALA A 59 ASP A 62 LYS A 65 HOH A 430 SITE 2 AC1 6 HOH A 494 HOH A 502 SITE 1 AC2 4 SER A 152 HIS A 153 GLU A 189 HIS A 193 SITE 1 AC3 6 HIS A 144 HIS A 153 HIS A 155 NA A 206 SITE 2 AC3 6 HOH A 460 HOH A 480 SITE 1 AC4 3 THR A 101 SER A 102 LYS A 134 SITE 1 AC5 5 ILE A 82 ARG A 96 PRO A 136 MET A 158 SITE 2 AC5 5 HOH A 508 SITE 1 AC6 7 HIS A 144 HIS A 155 ZN A 203 HOH A 460 SITE 2 AC6 7 HOH A 480 HOH A 556 HOH A 564 SITE 1 AC7 6 HIS B 144 HIS B 153 HIS B 155 HOH B 385 SITE 2 AC7 6 HOH B 417 HOH B 457 SITE 1 AC8 6 HOH A 488 ALA B 59 ASP B 62 LYS B 65 SITE 2 AC8 6 HOH B 435 HOH B 458 SITE 1 AC9 4 SER B 152 HIS B 153 GLU B 189 HIS B 193 SITE 1 AD1 4 HOH B 385 HOH B 403 HOH B 504 HOH B 516 SITE 1 AD2 1 THR B 80 CRYST1 41.021 65.724 73.532 90.00 91.24 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024378 0.000000 0.000528 0.00000 SCALE2 0.000000 0.015215 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013603 0.00000